Wall clock time and date at job start Tue Mar 31 2020 13:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 119.88549 * 2 1 4 4 C 1.37966 * 120.22742 * 180.29392 * 3 2 1 5 5 C 1.39662 * 119.99032 * 359.72813 * 4 3 2 6 6 C 1.47745 * 120.11662 * 179.97438 * 5 4 3 7 7 O 1.21472 * 119.99870 * 180.02562 * 6 5 4 8 8 O 1.34710 * 120.00105 * 0.02562 * 6 5 4 9 9 C 1.39516 * 119.76810 * 359.97438 * 5 4 3 10 10 C 1.38620 * 119.77069 * 359.97438 * 9 5 4 11 11 N 1.39976 * 119.99338 * 179.97438 * 10 9 5 12 12 C 1.34774 * 120.00429 * 331.34167 * 11 10 9 13 13 O 1.21592 * 119.99850 * 4.42407 * 12 11 10 14 14 N 1.34777 * 120.00000 * 184.42655 * 12 11 10 15 15 C 1.46503 * 119.99718 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47032 * 184.72614 * 15 14 12 17 17 C 1.50698 * 115.54874 * 303.63065 * 16 15 14 18 18 H 1.08001 * 120.00301 * 99.32133 * 17 16 15 19 19 C 1.37877 * 120.00175 * 279.04352 * 17 16 15 20 20 N 1.31512 * 120.00015 * 355.36018 * 19 17 16 21 21 Si 1.86799 * 120.00095 * 175.36584 * 19 17 16 22 22 H 1.48495 * 109.47139 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47243 * 119.99821 * 21 19 17 24 24 H 1.48499 * 109.46877 * 239.99880 * 21 19 17 25 25 C 1.52996 * 117.51548 * 89.33329 * 16 15 14 26 26 C 1.52993 * 117.49782 * 157.96073 * 16 15 14 27 27 H 1.09004 * 109.47599 * 270.25212 * 1 2 3 28 28 H 1.08996 * 109.47240 * 30.25268 * 1 2 3 29 29 H 1.09005 * 109.47320 * 150.25505 * 1 2 3 30 30 H 1.08001 * 119.88575 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.00359 * 179.70280 * 4 3 2 32 32 H 0.96693 * 117.00299 * 180.02562 * 8 6 5 33 33 H 1.07999 * 120.11629 * 180.02562 * 9 5 4 34 34 H 0.97008 * 119.99968 * 151.33583 * 11 10 9 35 35 H 0.96993 * 120.00253 * 359.97438 * 14 12 11 36 36 H 1.09006 * 109.47220 * 64.72930 * 15 14 12 37 37 H 1.08996 * 109.47617 * 304.73040 * 15 14 12 38 38 H 0.96998 * 120.00540 * 185.00507 * 20 19 17 39 39 H 1.09005 * 117.49460 * 214.96764 * 25 16 15 40 40 H 1.09001 * 117.50263 * 359.97438 * 25 16 15 41 41 H 1.09003 * 117.50296 * 359.97438 * 26 16 15 42 42 H 1.09009 * 117.50291 * 144.97712 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2070 -0.0061 5 6 4.2808 0.0016 -0.0066 6 6 5.7582 0.0071 -0.0137 7 8 6.3695 -1.0426 -0.0146 8 8 6.4274 1.1763 -0.0192 9 6 3.5854 -1.2079 -0.0003 10 6 2.1992 -1.2048 0.0069 11 7 1.4968 -2.4155 0.0126 12 6 2.0415 -3.5134 -0.5480 13 8 3.1747 -3.4733 -0.9870 14 7 1.3301 -4.6557 -0.6222 15 6 1.9221 -5.8490 -1.2322 16 6 0.8744 -6.9621 -1.2963 17 6 0.2470 -7.3408 0.0205 18 1 -0.7237 -6.9505 0.2883 19 6 0.9098 -8.1901 0.8810 20 7 2.0461 -8.7418 0.5149 21 14 0.1937 -8.5573 2.5668 22 1 -1.0833 -7.8181 2.7338 23 1 -0.0592 -10.0154 2.6904 24 1 1.1541 -8.1307 3.6161 25 6 -0.0070 -7.0321 -2.5449 26 6 1.0891 -8.0760 -2.3228 27 1 -0.3634 0.0045 1.0277 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3634 -0.8923 -0.5099 30 1 1.6521 2.1319 0.0004 31 1 4.1099 2.1455 -0.0109 32 1 7.3932 1.1293 -0.0242 33 1 4.1251 -2.1433 -0.0002 34 1 0.6178 -2.4644 0.4203 35 1 0.4263 -4.6879 -0.2717 36 1 2.7692 -6.1815 -0.6322 37 1 2.2619 -5.6113 -2.2402 38 1 2.4755 -9.3948 1.0894 39 1 -1.0408 -7.3522 -2.4138 40 1 0.1590 -6.2848 -3.3208 41 1 1.9766 -8.0157 -2.9528 42 1 0.7770 -9.0830 -2.0456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607743156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:42 Heat of formation + Delta-G solvation = -91.750586 kcal Electronic energy + Delta-G solvation = -26077.140367 eV Core-core repulsion = 22214.983038 eV Total energy + Delta-G solvation = -3862.157330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97248 -41.14696 -39.73344 -38.50703 -37.13296 -35.92044 -35.08302 -33.99219 -33.69164 -30.85791 -28.74114 -27.98909 -27.05531 -24.65157 -23.79587 -22.93800 -21.94861 -21.85315 -21.26004 -19.41672 -19.36660 -18.67573 -18.00413 -17.20976 -16.89520 -16.71130 -16.52259 -16.23218 -16.18937 -15.80229 -15.49563 -15.04819 -14.70044 -14.60020 -14.43097 -14.34681 -13.82798 -13.49825 -13.26618 -13.05380 -12.93247 -12.87109 -12.73418 -12.61422 -12.45172 -12.31705 -12.02246 -11.80225 -11.59544 -11.40813 -11.07748 -10.92659 -10.47418 -10.16217 -9.90230 -9.84602 -9.06610 -8.09877 -6.24287 -0.36863 0.32510 1.41134 1.43618 1.45201 1.53836 1.58321 2.01472 2.08340 2.41899 2.77703 3.16047 3.24294 3.55379 3.82073 3.87836 4.07316 4.18199 4.22407 4.32265 4.49022 4.53124 4.66497 4.71107 4.76303 4.87048 4.90264 4.99004 5.01698 5.18834 5.26777 5.27521 5.29943 5.38545 5.45721 5.49207 5.53592 5.61181 5.69261 5.78052 5.92842 6.01975 6.35956 6.83997 6.93403 7.05241 7.46024 7.49972 8.97588 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003186 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.168880 B = 8787.469740 C = 9145.617105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 C -0.105 4.105 4 C -0.068 4.068 5 C -0.140 4.140 6 C 0.529 3.471 7 O -0.558 6.558 8 O -0.496 6.496 9 C -0.096 4.096 10 C 0.140 3.860 11 N -0.668 5.668 12 C 0.692 3.308 13 O -0.623 6.623 14 N -0.703 5.703 15 C 0.197 3.803 16 C 0.005 3.995 17 C -0.502 4.502 18 H 0.069 0.931 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.949 3.051 22 H -0.255 1.255 23 H -0.286 1.286 24 H -0.293 1.293 25 C -0.175 4.175 26 C -0.159 4.159 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.180 0.820 31 H 0.165 0.835 32 H 0.432 0.568 33 H 0.120 0.880 34 H 0.425 0.575 35 H 0.411 0.589 36 H 0.024 0.976 37 H 0.038 0.962 38 H 0.258 0.742 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 24.015 0.136 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.087 4.087 5 C -0.141 4.141 6 C 0.375 3.625 7 O -0.450 6.450 8 O -0.309 6.309 9 C -0.118 4.118 10 C 0.044 3.956 11 N -0.317 5.317 12 C 0.392 3.608 13 O -0.504 6.504 14 N -0.356 5.356 15 C 0.072 3.928 16 C 0.005 3.995 17 C -0.539 4.539 18 H 0.087 0.913 19 C -0.176 4.176 20 N -0.545 5.545 21 Si 0.776 3.224 22 H -0.179 1.179 23 H -0.212 1.212 24 H -0.219 1.219 25 C -0.212 4.212 26 C -0.198 4.198 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.197 0.803 31 H 0.183 0.817 32 H 0.294 0.706 33 H 0.137 0.863 34 H 0.264 0.736 35 H 0.248 0.752 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.488 23.602 -0.192 23.859 hybrid contribution 0.471 -1.499 1.150 1.947 sum -3.017 22.103 0.958 22.328 Atomic orbital electron populations 1.20955 0.87781 1.04651 1.04310 1.20334 0.98343 0.90456 0.98230 1.21306 0.93218 0.98226 0.99533 1.21681 0.94966 0.96742 0.95275 1.18956 0.88892 0.95089 1.11205 1.21085 0.89342 0.80985 0.71057 1.90923 1.70887 1.35096 1.48133 1.84475 1.28545 1.32722 1.85166 1.21496 0.94130 0.98448 0.97680 1.17405 0.90023 0.85403 1.02730 1.42367 1.22419 1.06670 1.60278 1.16234 0.84291 0.81110 0.79161 1.90872 1.19254 1.84423 1.55851 1.44907 1.18621 1.08853 1.63214 1.20443 0.95147 0.83007 0.94211 1.19055 0.96086 0.94242 0.90163 1.20685 1.03578 1.29089 1.00574 0.91274 1.25723 0.94814 0.95881 1.01211 1.70121 1.18020 1.27864 1.38542 0.85640 0.78727 0.77767 0.80299 1.17870 1.21234 1.21933 1.23001 0.95881 1.01890 1.00406 1.22418 0.98928 0.94967 1.03469 0.88611 0.88187 0.91564 0.80320 0.81711 0.70586 0.86259 0.73611 0.75225 0.95761 0.94375 0.93330 0.89356 0.89479 0.91443 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.44 71.23 0.67 -0.60 16 2 C -0.07 -1.27 5.90 -19.69 -0.12 -1.39 16 3 C -0.10 -1.47 9.67 22.21 0.21 -1.26 16 4 C -0.07 -1.21 9.61 22.55 0.22 -1.00 16 5 C -0.14 -3.87 5.87 -20.11 -0.12 -3.99 16 6 C 0.53 15.14 8.27 70.34 0.58 15.72 16 7 O -0.56 -21.42 17.13 19.93 0.34 -21.08 16 8 O -0.50 -8.75 12.68 -56.20 -0.71 -9.46 16 9 C -0.10 -3.31 8.30 22.67 0.19 -3.12 16 10 C 0.14 3.89 6.38 38.10 0.24 4.13 16 11 N -0.67 -19.02 4.88 -317.27 -1.55 -20.57 16 12 C 0.69 26.89 8.44 179.06 1.51 28.41 16 13 O -0.62 -30.02 13.40 -4.01 -0.05 -30.07 16 14 N -0.70 -27.21 5.43 -478.52 -2.60 -29.80 16 15 C 0.20 9.11 5.55 86.38 0.48 9.59 16 16 C 0.01 0.25 1.52 -52.93 -0.08 0.17 16 17 C -0.50 -24.81 8.15 25.60 0.21 -24.60 16 18 H 0.07 3.24 7.82 -2.91 -0.02 3.22 16 19 C 0.02 1.28 5.44 84.66 0.46 1.74 16 20 N -0.91 -51.42 12.84 21.45 0.28 -51.14 16 21 Si 0.95 41.55 29.54 68.60 2.03 43.58 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 C -0.17 -6.85 9.93 30.59 0.30 -6.55 16 26 C -0.16 -7.27 9.41 30.59 0.29 -6.98 16 27 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 0.61 8.08 -2.39 -0.02 0.59 16 29 H 0.07 0.79 7.05 -2.38 -0.02 0.77 16 30 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.17 1.97 7.61 -2.91 -0.02 1.95 16 32 H 0.43 3.81 9.11 -74.06 -0.67 3.13 16 33 H 0.12 5.33 5.32 -2.91 -0.02 5.31 16 34 H 0.42 8.73 7.59 -92.70 -0.70 8.03 16 35 H 0.41 13.84 8.03 -92.71 -0.74 13.10 16 36 H 0.02 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 38 H 0.26 14.15 8.32 -92.71 -0.77 13.37 16 39 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 40 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.07 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -77.32 363.06 1.76 -75.56 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -1.03 Total: 32.70 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.05 Total: 10.29 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -3.87 Total: -101.52 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -0.42 Total: -60.61 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -77.32 1.76 -75.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607743156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.186 kcal (2) G-P(sol) polarization free energy of solvation -77.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds