Wall clock time and date at job start Tue Mar 31 2020 12:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00439 * 2 1 4 4 H 1.48495 * 109.47402 * 270.00390 * 3 2 1 5 5 H 1.48505 * 109.46840 * 30.00758 * 3 2 1 6 6 H 1.48506 * 109.47013 * 150.00201 * 3 2 1 7 7 C 1.37881 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00221 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99943 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47081 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47108 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00112 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00320 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00390 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47213 * 179.97438 * 14 13 11 16 16 C 1.38366 * 119.45266 * 95.02609 * 15 14 13 17 17 C 1.38342 * 119.30414 * 179.69722 * 16 15 14 18 18 C 1.40073 * 118.28737 * 0.54137 * 17 16 15 19 19 C 1.47721 * 120.56665 * 179.73285 * 18 17 16 20 20 O 1.21467 * 120.00056 * 174.14730 * 19 18 17 21 21 O 1.34712 * 119.99845 * 354.14557 * 19 18 17 22 22 C 1.39572 * 118.86940 * 359.46052 * 18 17 16 23 23 C 1.50704 * 119.72258 * 180.29852 * 22 18 17 24 24 C 1.52995 * 117.50156 * 178.08846 * 23 22 18 25 25 C 1.53001 * 117.49889 * 109.46155 * 23 22 18 26 26 N 1.31689 * 120.56264 * 0.27373 * 22 18 17 27 27 H 0.97005 * 119.99685 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46934 * 60.00130 * 9 7 2 29 29 H 1.08999 * 109.47353 * 300.00156 * 9 7 2 30 30 H 1.08995 * 109.47401 * 59.99934 * 10 9 7 31 31 H 1.09003 * 109.47183 * 299.99487 * 10 9 7 32 32 H 0.97006 * 119.99423 * 359.97438 * 13 11 10 33 33 H 1.09003 * 109.46809 * 60.00059 * 14 13 11 34 34 H 1.08999 * 109.47382 * 300.00144 * 14 13 11 35 35 H 1.07998 * 120.34857 * 359.95158 * 16 15 14 36 36 H 1.08003 * 120.85846 * 180.29162 * 17 16 15 37 37 H 0.96695 * 116.99805 * 180.02562 * 21 19 18 38 38 H 1.09006 * 115.54503 * 323.80071 * 23 22 18 39 39 H 1.09003 * 117.49787 * 359.97438 * 24 23 22 40 40 H 1.09001 * 117.50239 * 145.02025 * 24 23 22 41 41 H 1.09001 * 117.49585 * 214.97906 * 25 23 22 42 42 H 1.08999 * 117.49777 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0023 11 6 5.5284 -2.6368 -0.0022 12 8 6.1348 -1.5865 -0.0018 13 7 6.2022 -3.8040 -0.0037 14 6 7.6672 -3.8041 -0.0042 15 6 8.1694 -5.2249 -0.0052 16 6 8.4953 -5.8305 -1.2059 17 6 8.9620 -7.1328 -1.2027 18 6 9.0755 -7.7943 0.0268 19 6 9.5627 -9.1875 0.0881 20 8 9.7584 -9.7156 1.1643 21 8 9.7900 -9.8722 -1.0495 22 6 8.7260 -7.1126 1.1935 23 6 8.8471 -7.8036 2.5273 24 6 8.4929 -6.9947 3.7767 25 6 9.9543 -7.3293 3.4707 26 7 8.2916 -5.8706 1.1388 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6806 0.8889 29 1 3.8745 -0.6802 -0.8911 30 1 3.6577 -3.1500 -0.8924 31 1 3.6584 -3.1511 0.8876 32 1 5.7171 -4.6441 -0.0044 33 1 8.0308 -3.2912 0.8862 34 1 8.0303 -3.2894 -0.8937 35 1 8.3903 -5.2908 -2.1354 36 1 9.2282 -7.6281 -2.1248 37 1 10.1079 -10.7809 -0.9589 38 1 8.6047 -8.8664 2.5298 39 1 8.1727 -5.9626 3.6340 40 1 8.0173 -7.5252 4.6017 41 1 10.4399 -8.0799 4.0943 42 1 10.5953 -6.5177 3.1265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:01 Heat of formation + Delta-G solvation = -70.679988 kcal Electronic energy + Delta-G solvation = -25238.822297 eV Core-core repulsion = 21377.578657 eV Total energy + Delta-G solvation = -3861.243640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51476 -40.09230 -39.19330 -37.43604 -36.44441 -34.97107 -33.48036 -33.10170 -31.93604 -31.19233 -28.03285 -25.88786 -25.47756 -23.49843 -22.67070 -21.95163 -21.28762 -21.14075 -19.78095 -18.67115 -17.79336 -17.45073 -16.86033 -16.62439 -16.21299 -15.95771 -15.78303 -15.22304 -15.00115 -14.77085 -14.29890 -14.13534 -14.03755 -13.49919 -13.29591 -13.10493 -12.84032 -12.55896 -12.31218 -12.17913 -12.04545 -11.71515 -11.42042 -11.24134 -10.98063 -10.95799 -10.52626 -10.43612 -10.17259 -10.05008 -9.95987 -9.78590 -9.50662 -9.20695 -9.14499 -8.98874 -8.50234 -6.02449 -4.01232 -0.09327 0.66103 1.97618 2.42509 2.98982 3.07403 3.38038 3.38501 3.45121 3.56041 3.66042 3.73993 3.99975 4.14872 4.27836 4.51473 4.54401 4.72082 4.80326 4.81062 4.93044 5.14291 5.21409 5.31635 5.33061 5.41218 5.43768 5.59978 5.65741 5.65970 5.81839 5.97371 5.98698 6.07079 6.09277 6.10742 6.46477 6.68357 7.36124 7.36210 7.38997 7.43725 7.67364 7.79383 8.49236 8.59942 9.00623 9.60514 11.10378 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.002288 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.733606 B =12236.706133 C =12599.976966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.121 4.121 11 C 0.514 3.486 12 O -0.538 6.538 13 N -0.735 5.735 14 C 0.167 3.833 15 C 0.157 3.843 16 C -0.175 4.175 17 C -0.013 4.013 18 C -0.179 4.179 19 C 0.533 3.467 20 O -0.499 6.499 21 O -0.513 6.513 22 C 0.230 3.770 23 C -0.124 4.124 24 C -0.161 4.161 25 C -0.152 4.152 26 N -0.470 5.470 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.400 0.600 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.417 0.583 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.278 -21.775 -0.940 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.302 3.698 12 O -0.413 6.413 13 N -0.390 5.390 14 C 0.042 3.958 15 C 0.018 3.982 16 C -0.195 4.195 17 C -0.039 4.039 18 C -0.183 4.183 19 C 0.376 3.624 20 O -0.388 6.388 21 O -0.325 6.325 22 C 0.092 3.908 23 C -0.142 4.142 24 C -0.198 4.198 25 C -0.190 4.190 26 N -0.179 5.179 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.234 0.766 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.276 0.724 38 H 0.158 0.842 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 23.252 -20.162 0.078 30.776 hybrid contribution 0.615 -0.692 -0.906 1.295 sum 23.867 -20.854 -0.828 31.705 Atomic orbital electron populations 1.69912 1.06307 1.26967 1.51056 1.24977 0.94714 0.99250 0.94337 0.86791 0.80644 0.83371 0.78721 1.20256 1.21460 1.18488 1.21111 0.89271 0.94565 1.51348 0.90938 1.19376 0.96422 0.90136 0.97703 1.21674 0.87575 1.03362 1.03464 1.21578 0.91584 0.82452 0.74138 1.90665 1.70696 1.31328 1.48640 1.46086 1.05172 1.09677 1.78070 1.20122 0.82167 0.89324 1.04167 1.21637 0.92153 0.96057 0.88303 1.22084 1.01821 0.95702 0.99884 1.21929 0.90814 0.93630 0.97512 1.19819 1.10050 0.92893 0.95542 1.20542 0.74165 0.86273 0.81403 1.90873 1.48111 1.70020 1.29797 1.84539 1.79446 1.32318 1.36209 1.20577 0.88533 0.88551 0.93180 1.21275 1.06980 0.99719 0.86230 1.23038 0.97465 1.02089 0.97192 1.22886 0.91961 1.02902 1.01206 1.67440 1.13744 1.07830 1.28873 0.92720 0.95767 0.96245 0.89540 0.89471 0.76585 0.89471 0.89519 0.83226 0.82897 0.72413 0.84171 0.87199 0.88377 0.88157 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.30 5.64 -27.88 -0.16 -2.46 16 11 C 0.51 9.05 7.83 -10.98 -0.09 8.96 16 12 O -0.54 -11.53 15.98 5.55 0.09 -11.44 16 13 N -0.74 -9.51 5.55 -61.48 -0.34 -9.85 16 14 C 0.17 1.88 5.97 -5.20 -0.03 1.85 16 15 C 0.16 1.53 6.15 -82.50 -0.51 1.02 16 16 C -0.17 -1.31 9.70 -39.50 -0.38 -1.69 16 17 C -0.01 -0.09 9.74 -38.86 -0.38 -0.47 16 18 C -0.18 -1.58 5.89 -104.84 -0.62 -2.20 16 19 C 0.53 4.34 8.24 34.61 0.29 4.63 16 20 O -0.50 -5.06 14.20 -19.24 -0.27 -5.33 16 21 O -0.51 -2.61 12.77 -40.52 -0.52 -3.12 16 22 C 0.23 2.37 6.50 -82.15 -0.53 1.83 16 23 C -0.12 -1.21 4.61 -91.77 -0.42 -1.63 16 24 C -0.16 -1.48 10.02 -26.73 -0.27 -1.75 16 25 C -0.15 -1.33 10.23 -26.73 -0.27 -1.61 16 26 N -0.47 -5.13 9.19 -5.40 -0.05 -5.18 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.02 0.63 7.16 -51.93 -0.37 0.25 16 29 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.40 4.36 8.46 -40.82 -0.35 4.01 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 35 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.15 0.71 7.72 -52.48 -0.40 0.31 16 37 H 0.42 0.31 9.11 45.56 0.42 0.73 16 38 H 0.14 1.42 6.13 -51.93 -0.32 1.10 16 39 H 0.11 1.15 7.54 -51.93 -0.39 0.76 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -36.17 363.76 -8.17 -44.34 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.77 Total: 1.43 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.90 Total: -6.95 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.38 Total: -42.27 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.70 Total: -19.90 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.17 -8.17 -44.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.339 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds