Wall clock time and date at job start Tue Mar 31 2020 12:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00439 * 2 1 4 4 H 1.48495 * 109.47402 * 270.00390 * 3 2 1 5 5 H 1.48505 * 109.46840 * 30.00758 * 3 2 1 6 6 H 1.48506 * 109.47013 * 150.00201 * 3 2 1 7 7 C 1.37881 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00221 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99943 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47081 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47108 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00112 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00320 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00390 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47213 * 179.97438 * 14 13 11 16 16 C 1.38366 * 119.45266 * 95.02609 * 15 14 13 17 17 C 1.38342 * 119.30414 * 179.69722 * 16 15 14 18 18 C 1.40073 * 118.28737 * 0.54137 * 17 16 15 19 19 C 1.47721 * 120.56665 * 179.73285 * 18 17 16 20 20 O 1.21467 * 120.00056 * 174.14730 * 19 18 17 21 21 O 1.34712 * 119.99845 * 354.14557 * 19 18 17 22 22 C 1.39572 * 118.86940 * 359.46052 * 18 17 16 23 23 C 1.50704 * 119.72258 * 180.29852 * 22 18 17 24 24 C 1.52995 * 117.50156 * 178.08846 * 23 22 18 25 25 C 1.53001 * 117.49889 * 109.46155 * 23 22 18 26 26 N 1.31689 * 120.56264 * 0.27373 * 22 18 17 27 27 H 0.97005 * 119.99685 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46934 * 60.00130 * 9 7 2 29 29 H 1.08999 * 109.47353 * 300.00156 * 9 7 2 30 30 H 1.08995 * 109.47401 * 59.99934 * 10 9 7 31 31 H 1.09003 * 109.47183 * 299.99487 * 10 9 7 32 32 H 0.97006 * 119.99423 * 359.97438 * 13 11 10 33 33 H 1.09003 * 109.46809 * 60.00059 * 14 13 11 34 34 H 1.08999 * 109.47382 * 300.00144 * 14 13 11 35 35 H 1.07998 * 120.34857 * 359.95158 * 16 15 14 36 36 H 1.08003 * 120.85846 * 180.29162 * 17 16 15 37 37 H 0.96695 * 116.99805 * 180.02562 * 21 19 18 38 38 H 1.09006 * 115.54503 * 323.80071 * 23 22 18 39 39 H 1.09003 * 117.49787 * 359.97438 * 24 23 22 40 40 H 1.09001 * 117.50239 * 145.02025 * 24 23 22 41 41 H 1.09001 * 117.49585 * 214.97906 * 25 23 22 42 42 H 1.08999 * 117.49777 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0023 11 6 5.5284 -2.6368 -0.0022 12 8 6.1348 -1.5865 -0.0018 13 7 6.2022 -3.8040 -0.0037 14 6 7.6672 -3.8041 -0.0042 15 6 8.1694 -5.2249 -0.0052 16 6 8.4953 -5.8305 -1.2059 17 6 8.9620 -7.1328 -1.2027 18 6 9.0755 -7.7943 0.0268 19 6 9.5627 -9.1875 0.0881 20 8 9.7584 -9.7156 1.1643 21 8 9.7900 -9.8722 -1.0495 22 6 8.7260 -7.1126 1.1935 23 6 8.8471 -7.8036 2.5273 24 6 8.4929 -6.9947 3.7767 25 6 9.9543 -7.3293 3.4707 26 7 8.2916 -5.8706 1.1388 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6806 0.8889 29 1 3.8745 -0.6802 -0.8911 30 1 3.6577 -3.1500 -0.8924 31 1 3.6584 -3.1511 0.8876 32 1 5.7171 -4.6441 -0.0044 33 1 8.0308 -3.2912 0.8862 34 1 8.0303 -3.2894 -0.8937 35 1 8.3903 -5.2908 -2.1354 36 1 9.2282 -7.6281 -2.1248 37 1 10.1079 -10.7809 -0.9589 38 1 8.6047 -8.8664 2.5298 39 1 8.1727 -5.9626 3.6340 40 1 8.0173 -7.5252 4.6017 41 1 10.4399 -8.0799 4.0943 42 1 10.5953 -6.5177 3.1265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:00 Heat of formation + Delta-G solvation = -96.515925 kcal Electronic energy + Delta-G solvation = -25239.942627 eV Core-core repulsion = 21377.578657 eV Total energy + Delta-G solvation = -3862.363970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17059 -40.87283 -40.38639 -38.13567 -36.99657 -36.08096 -35.49271 -33.84288 -33.35210 -32.54316 -29.21038 -27.41431 -26.22464 -24.36199 -23.35647 -23.03192 -22.51468 -21.90375 -21.24785 -19.27483 -19.19566 -18.37490 -17.96998 -17.48729 -17.36201 -16.85208 -16.64614 -16.55302 -16.22715 -15.76437 -15.36198 -15.07310 -14.89505 -14.78051 -14.67752 -14.44717 -13.90827 -13.70965 -13.43945 -13.37908 -13.01691 -12.86807 -12.58960 -12.42159 -12.09730 -11.95476 -11.90778 -11.74972 -11.66360 -11.38629 -11.21018 -11.14296 -10.83579 -10.76629 -10.59585 -10.15546 -10.03306 -8.30032 -6.32970 -0.75736 0.04946 1.33975 1.35025 1.37179 1.52213 1.67790 1.91456 2.15143 2.36669 2.54270 2.84038 3.03417 3.05821 3.29119 3.52904 3.69574 3.88270 3.99512 4.04225 4.11817 4.17603 4.35393 4.42898 4.42981 4.51762 4.54805 4.65896 4.74305 4.80591 4.97012 4.97228 5.01420 5.16426 5.28001 5.29479 5.38305 5.42205 5.46993 5.56225 5.62755 6.24788 6.49822 6.70519 6.73649 6.92277 7.25803 7.32402 8.85678 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.002288 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.733606 B =12236.706133 C =12599.976966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.529 4.529 8 H 0.049 0.951 9 C 0.005 3.995 10 C -0.116 4.116 11 C 0.521 3.479 12 O -0.580 6.580 13 N -0.714 5.714 14 C 0.170 3.830 15 C 0.143 3.857 16 C -0.162 4.162 17 C -0.003 4.003 18 C -0.185 4.185 19 C 0.537 3.463 20 O -0.524 6.524 21 O -0.502 6.502 22 C 0.211 3.789 23 C -0.128 4.128 24 C -0.163 4.163 25 C -0.146 4.146 26 N -0.491 5.491 27 H 0.267 0.733 28 H 0.009 0.991 29 H 0.012 0.988 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.436 0.564 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.075 -22.925 -2.320 34.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.033 4.033 10 C -0.156 4.156 11 C 0.309 3.691 12 O -0.459 6.459 13 N -0.367 5.367 14 C 0.046 3.954 15 C 0.005 3.995 16 C -0.182 4.182 17 C -0.028 4.028 18 C -0.189 4.189 19 C 0.381 3.619 20 O -0.415 6.415 21 O -0.316 6.316 22 C 0.072 3.928 23 C -0.147 4.147 24 C -0.200 4.200 25 C -0.184 4.184 26 N -0.201 5.201 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.031 0.969 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.194 0.806 36 H 0.201 0.799 37 H 0.299 0.701 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 25.066 -21.385 -1.321 32.975 hybrid contribution 0.071 -0.497 -0.513 0.718 sum 25.137 -21.882 -1.834 33.378 Atomic orbital electron populations 1.70029 1.07839 1.28083 1.52575 1.25829 0.95508 1.02948 0.94290 0.85809 0.79227 0.79349 0.79214 1.19172 1.20554 1.18470 1.21441 0.91335 0.93663 1.50259 0.93272 1.19228 0.93837 0.93728 0.96522 1.21493 0.89102 0.99967 1.05045 1.21122 0.90881 0.82999 0.74073 1.90654 1.71199 1.33012 1.51078 1.45796 1.06250 1.08785 1.75875 1.20154 0.80512 0.90706 1.04058 1.21455 0.93628 0.95320 0.89069 1.22322 1.00219 0.95828 0.99837 1.22251 0.89462 0.93263 0.97838 1.19987 1.09625 0.93447 0.95805 1.20435 0.73656 0.86144 0.81617 1.90867 1.49279 1.70515 1.30880 1.84486 1.78928 1.33721 1.34508 1.20659 0.89592 0.88639 0.93888 1.21274 1.07470 0.99438 0.86513 1.23007 0.98034 1.01335 0.97611 1.22910 0.91646 1.02882 1.00973 1.67325 1.14469 1.08420 1.29875 0.92412 0.97223 0.96922 0.87656 0.88329 0.75110 0.91103 0.88170 0.80642 0.79947 0.70096 0.84638 0.88751 0.87248 0.86974 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.94 46.63 27.47 68.60 1.88 48.52 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -12.83 6.54 99.48 0.65 -12.18 16 7 C -0.53 -30.46 9.66 25.60 0.25 -30.21 16 8 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 9 C 0.00 0.24 3.33 29.85 0.10 0.34 16 10 C -0.12 -4.31 5.64 29.85 0.17 -4.14 16 11 C 0.52 17.74 7.83 87.66 0.69 18.43 16 12 O -0.58 -24.54 15.98 -3.04 -0.05 -24.59 16 13 N -0.71 -17.27 5.55 -466.80 -2.59 -19.86 16 14 C 0.17 3.58 5.97 85.63 0.51 4.09 16 15 C 0.14 2.53 6.15 42.57 0.26 2.80 16 16 C -0.16 -1.91 9.70 22.32 0.22 -1.69 16 17 C 0.00 -0.03 9.74 22.74 0.22 0.19 16 18 C -0.19 -2.89 5.89 -20.00 -0.12 -3.01 16 19 C 0.54 7.71 8.24 70.33 0.58 8.29 16 20 O -0.52 -10.05 14.20 19.94 0.28 -9.77 16 21 O -0.50 -3.60 12.77 -56.21 -0.72 -4.32 16 22 C 0.21 4.16 6.50 42.90 0.28 4.44 16 23 C -0.13 -2.48 4.61 -11.54 -0.05 -2.54 16 24 C -0.16 -3.00 10.02 30.59 0.31 -2.70 16 25 C -0.15 -2.53 10.23 30.60 0.31 -2.22 16 26 N -0.49 -10.38 9.19 -171.01 -1.57 -11.95 16 27 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 28 H 0.01 0.49 7.16 -2.39 -0.02 0.47 16 29 H 0.01 0.63 7.53 -2.39 -0.02 0.61 16 30 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.41 8.11 8.46 -92.70 -0.78 7.33 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 1.89 8.04 -2.39 -0.02 1.87 16 35 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 36 H 0.18 0.86 7.72 -2.91 -0.02 0.83 16 37 H 0.44 -0.62 9.11 -74.06 -0.67 -1.29 16 38 H 0.14 2.73 6.13 -2.38 -0.01 2.71 16 39 H 0.09 2.04 7.54 -2.39 -0.02 2.02 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -78.93 363.76 1.28 -77.64 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -0.44 Total: 10.07 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 4.18 Total: -6.78 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.86 Total: -90.77 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.48 Total: -38.68 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.88 Total: 48.52 kcal Total: -78.93 1.28 -77.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.872 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds