Wall clock time and date at job start Tue Mar 31 2020 11:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99620 * 2 1 4 4 H 1.48506 * 109.47264 * 240.00138 * 3 2 1 5 5 H 1.48500 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47140 * 120.00147 * 3 2 1 7 7 C 1.38945 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00389 * 178.82721 * 7 2 1 9 9 N 1.37102 * 120.00054 * 358.83002 * 7 2 1 10 10 C 1.46505 * 119.99581 * 347.08964 * 9 7 2 11 11 C 1.50699 * 109.47315 * 84.24507 * 10 9 7 12 12 O 1.20829 * 119.99938 * 5.29482 * 11 10 9 13 13 O 1.34223 * 120.00031 * 185.29097 * 11 10 9 14 14 C 1.34770 * 120.00339 * 167.08771 * 9 7 2 15 15 O 1.21297 * 120.00094 * 5.11833 * 14 9 7 16 16 C 1.50701 * 120.00070 * 185.11513 * 14 9 7 17 17 H 1.08997 * 110.28704 * 26.89813 * 16 14 9 18 18 C 1.54260 * 110.32686 * 264.76470 * 16 14 9 19 19 C 1.54375 * 105.06274 * 241.10545 * 18 16 14 20 20 N 1.48559 * 104.59554 * 336.14791 * 19 18 16 21 21 C 1.39667 * 111.00034 * 159.04290 * 20 19 18 22 22 C 1.38915 * 120.07453 * 216.82691 * 21 20 19 23 23 C 1.38101 * 119.92615 * 179.76499 * 22 21 20 24 24 C 1.38286 * 120.07419 * 0.51228 * 23 22 21 25 25 C 1.38285 * 120.15194 * 359.74165 * 24 23 22 26 26 C 1.38109 * 120.07207 * 0.02562 * 25 24 23 27 27 C 1.48556 * 104.21981 * 39.48203 * 20 19 18 28 28 H 0.96997 * 120.00473 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46659 * 204.24518 * 10 9 7 30 30 H 1.09001 * 109.47022 * 324.24232 * 10 9 7 31 31 H 0.96699 * 117.00369 * 179.97438 * 13 11 10 32 32 H 1.09007 * 110.32254 * 0.02562 * 18 16 14 33 33 H 1.09004 * 110.32369 * 122.20313 * 18 16 14 34 34 H 1.08997 * 110.40877 * 94.92915 * 19 18 16 35 35 H 1.09000 * 110.41147 * 217.36906 * 19 18 16 36 36 H 1.08005 * 120.03431 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.96515 * 180.25411 * 23 22 21 38 38 H 1.08000 * 119.92629 * 179.76752 * 24 23 22 39 39 H 1.07996 * 119.96791 * 179.97438 * 25 24 23 40 40 H 1.07995 * 120.03959 * 180.02562 * 26 25 24 41 41 H 1.09010 * 110.40888 * 201.73570 * 27 20 19 42 42 H 1.08997 * 110.51074 * 79.34995 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6966 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2032 -0.0005 8 1 3.0887 -1.2033 -0.0197 9 7 1.3238 -2.3905 0.0232 10 6 -0.1083 -2.4037 0.3322 11 6 -0.8954 -2.1220 -0.9217 12 8 -0.3264 -2.0249 -1.9832 13 8 -2.2285 -1.9792 -0.8593 14 6 1.9675 -3.5454 -0.2378 15 8 3.1693 -3.5462 -0.4020 16 6 1.1942 -4.8359 -0.3255 17 1 0.1654 -4.6402 -0.6276 18 6 1.2239 -5.5717 1.0300 19 6 1.9183 -6.9196 0.7397 20 7 1.7037 -7.1461 -0.7127 21 6 2.6407 -8.0476 -1.2225 22 6 3.1552 -7.8687 -2.5005 23 6 4.0852 -8.7593 -2.9997 24 6 4.4964 -9.8342 -2.2330 25 6 3.9825 -10.0182 -0.9625 26 6 3.0557 -9.1287 -0.4553 27 6 1.8731 -5.8013 -1.3207 28 1 -0.4851 0.8400 0.0004 29 1 -0.3864 -3.3822 0.7237 30 1 -0.3262 -1.6388 1.0775 31 1 -2.6901 -1.7991 -1.6897 32 1 1.7975 -4.9992 1.7590 33 1 0.2096 -5.7386 1.3925 34 1 2.9836 -6.8537 0.9609 35 1 1.4570 -7.7178 1.3212 36 1 2.8313 -7.0317 -3.1013 37 1 4.4886 -8.6185 -3.9915 38 1 5.2211 -10.5313 -2.6272 39 1 4.3054 -10.8589 -0.3665 40 1 2.6549 -9.2727 0.5372 41 1 1.3778 -5.7575 -2.2908 42 1 2.9309 -5.5592 -1.4237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:19 Heat of formation + Delta-G solvation = -68.653541 kcal Electronic energy + Delta-G solvation = -27241.150163 eV Core-core repulsion = 23379.994396 eV Total energy + Delta-G solvation = -3861.155767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44390 -39.37251 -38.39782 -37.06037 -35.24149 -34.47674 -32.70092 -31.61043 -31.13668 -28.86957 -28.35652 -27.67498 -25.12824 -23.10501 -22.85607 -21.24985 -20.74426 -20.60094 -18.60852 -17.48468 -17.18859 -16.95973 -16.72392 -15.63284 -15.57539 -15.34974 -14.98553 -14.57676 -14.41740 -14.28579 -13.89494 -13.68742 -13.37767 -13.24176 -12.97657 -12.59393 -12.27718 -12.08469 -11.95864 -11.80986 -11.45470 -11.28116 -11.24980 -10.98485 -10.91818 -10.75135 -10.54595 -10.50029 -10.35828 -10.34293 -9.75803 -9.61582 -9.09735 -8.89208 -8.60888 -8.06955 -7.78412 -6.46337 -4.01794 1.44049 1.44911 3.09892 3.19144 3.22397 3.42639 3.66528 3.71967 3.96216 4.13956 4.24322 4.68047 4.68531 4.77622 4.98291 4.99803 5.14233 5.16476 5.22902 5.45653 5.47145 5.52412 5.62210 5.69274 5.75140 5.85649 5.91620 5.95614 5.99440 6.10394 6.16133 6.25017 6.39536 6.43533 6.54297 6.58879 6.78771 6.82277 6.97679 7.35251 7.43211 7.58996 7.86331 8.27478 8.98652 9.10354 9.22337 9.71721 10.56032 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.003553 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.589927 B = 7878.374277 C = 8370.282525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.286 4.286 8 H 0.108 0.892 9 N -0.432 5.432 10 C 0.147 3.853 11 C 0.501 3.499 12 O -0.527 6.527 13 O -0.531 6.531 14 C 0.467 3.533 15 O -0.576 6.576 16 C -0.108 4.108 17 H 0.088 0.912 18 C -0.112 4.112 19 C 0.040 3.960 20 N -0.467 5.467 21 C 0.114 3.886 22 C -0.157 4.157 23 C -0.093 4.093 24 C -0.156 4.156 25 C -0.097 4.097 26 C -0.156 4.156 27 C 0.051 3.949 28 H 0.274 0.726 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.389 0.611 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 -13.559 1.281 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.173 4.173 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.413 4.413 8 H 0.126 0.874 9 N -0.151 5.151 10 C 0.021 3.979 11 C 0.343 3.657 12 O -0.414 6.414 13 O -0.341 6.341 14 C 0.255 3.745 15 O -0.460 6.460 16 C -0.131 4.131 17 H 0.106 0.894 18 C -0.151 4.151 19 C -0.085 4.085 20 N -0.181 5.181 21 C 0.015 3.985 22 C -0.177 4.177 23 C -0.112 4.112 24 C -0.175 4.175 25 C -0.115 4.115 26 C -0.177 4.177 27 C -0.075 4.075 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.245 0.755 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.511 -13.581 1.221 13.646 hybrid contribution 0.378 1.390 -0.673 1.590 sum -0.133 -12.191 0.547 12.204 Atomic orbital electron populations 1.69416 1.05903 1.27839 1.51518 1.25237 0.95729 1.00015 0.96319 0.85725 0.78617 0.79718 0.79052 1.19864 1.20864 1.19805 1.19814 0.93137 0.81610 1.46741 0.87393 1.43417 1.05828 1.06076 1.59797 1.20991 0.80918 1.01950 0.94062 1.23579 0.79266 0.71272 0.91569 1.90591 1.70196 1.48468 1.32171 1.84514 1.23383 1.84766 1.41449 1.19752 0.88094 0.84578 0.82104 1.90526 1.14588 1.86265 1.54589 1.21943 1.00564 0.94420 0.96155 0.89384 1.22297 1.01556 0.94615 0.96589 1.23193 1.00149 0.97826 0.87369 1.62318 1.42355 1.08237 1.05184 1.19213 0.90443 0.94510 0.94370 1.21109 0.99454 1.01284 0.95891 1.20995 0.96509 0.94218 0.99489 1.21002 1.02205 0.99104 0.95228 1.20950 0.96474 0.98483 0.95632 1.20895 1.00470 0.96131 1.00208 1.23156 1.01992 0.84761 0.97554 0.91504 0.91227 0.84007 0.75536 0.90200 0.90273 0.92297 0.89651 0.85624 0.86145 0.86504 0.86254 0.85954 0.89723 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.73 7.99 55.50 0.44 -22.29 16 2 C 0.03 0.66 5.36 -17.47 -0.09 0.57 16 3 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.29 -7.69 9.44 -14.93 -0.14 -7.83 16 8 H 0.11 3.03 7.22 -52.49 -0.38 2.65 16 9 N -0.43 -10.60 2.14 -116.09 -0.25 -10.85 16 10 C 0.15 3.15 4.90 -5.19 -0.03 3.12 16 11 C 0.50 11.15 5.64 36.01 0.20 11.35 16 12 O -0.53 -13.67 17.07 -18.75 -0.32 -13.99 16 13 O -0.53 -9.74 13.42 -39.24 -0.53 -10.27 16 14 C 0.47 10.91 6.50 -10.99 -0.07 10.84 16 15 O -0.58 -15.28 15.36 5.54 0.09 -15.20 16 16 C -0.11 -1.98 2.50 -90.39 -0.23 -2.20 16 17 H 0.09 1.58 6.39 -51.93 -0.33 1.25 16 18 C -0.11 -1.66 6.33 -25.35 -0.16 -1.82 16 19 C 0.04 0.55 5.29 -2.19 -0.01 0.54 16 20 N -0.47 -7.10 5.49 -166.71 -0.91 -8.01 16 21 C 0.11 1.67 5.64 -83.79 -0.47 1.19 16 22 C -0.16 -2.24 8.85 -39.38 -0.35 -2.58 16 23 C -0.09 -1.15 10.04 -39.61 -0.40 -1.55 16 24 C -0.16 -1.76 10.04 -39.55 -0.40 -2.16 16 25 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 26 C -0.16 -1.99 9.03 -39.38 -0.36 -2.34 16 27 C 0.05 0.89 4.59 -2.18 -0.01 0.88 16 28 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.07 1.23 6.15 -51.93 -0.32 0.91 16 30 H 0.14 3.19 6.24 -51.93 -0.32 2.87 16 31 H 0.39 5.56 9.10 45.56 0.41 5.97 16 32 H 0.08 1.24 7.70 -51.92 -0.40 0.84 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 35 H 0.09 0.95 7.61 -51.93 -0.40 0.56 16 36 H 0.13 1.79 6.59 -52.48 -0.35 1.44 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.35 6.87 -52.49 -0.36 0.99 16 41 H 0.08 1.43 7.71 -51.92 -0.40 1.03 16 42 H 0.08 1.58 6.32 -51.93 -0.33 1.25 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -32.38 342.88 -8.65 -41.03 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.40 Total: 12.25 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -2.91 Total: 6.52 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -0.72 Total: -41.16 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.76 Total: -39.45 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.38 -8.65 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.626 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds