Wall clock time and date at job start Tue Mar 31 2020 11:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00230 * 2 1 4 4 H 1.48498 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46973 * 299.99960 * 3 2 1 6 6 H 1.48497 * 109.47371 * 59.99689 * 3 2 1 7 7 C 1.38948 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99934 * 163.29058 * 7 2 1 9 9 N 1.37103 * 120.00243 * 343.28833 * 7 2 1 10 10 C 1.46505 * 119.99554 * 342.58483 * 9 7 2 11 11 C 1.50696 * 109.47247 * 97.06854 * 10 9 7 12 12 O 1.20833 * 120.00029 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00105 * 179.97438 * 11 10 9 14 14 C 1.34766 * 120.00205 * 162.57911 * 9 7 2 15 15 O 1.21292 * 120.00353 * 5.29942 * 14 9 7 16 16 C 1.50704 * 120.00287 * 185.29682 * 14 9 7 17 17 H 1.09004 * 110.62924 * 339.75365 * 16 14 9 18 18 C 1.55147 * 110.70559 * 103.04137 * 16 14 9 19 19 C 1.54909 * 101.65028 * 154.04073 * 18 16 14 20 20 N 1.47850 * 104.79389 * 322.93378 * 19 18 16 21 21 C 1.39674 * 110.99671 * 146.37004 * 20 19 18 22 22 C 1.38918 * 120.07090 * 277.56041 * 21 20 19 23 23 C 1.38099 * 119.92455 * 179.77158 * 22 21 20 24 24 C 1.38288 * 120.07361 * 0.50558 * 23 22 21 25 25 C 1.38286 * 120.15092 * 359.74979 * 24 23 22 26 26 C 1.38102 * 120.07264 * 359.97438 * 25 24 23 27 27 C 1.47437 * 108.57013 * 24.09498 * 20 19 18 28 28 H 0.96998 * 120.00022 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46885 * 217.07141 * 10 9 7 30 30 H 1.08992 * 109.47144 * 337.06641 * 10 9 7 31 31 H 0.96699 * 116.99812 * 179.97438 * 13 11 10 32 32 H 1.08996 * 110.99483 * 272.13309 * 18 16 14 33 33 H 1.08998 * 110.98539 * 35.95397 * 18 16 14 34 34 H 1.08997 * 110.37258 * 204.10870 * 19 18 16 35 35 H 1.08993 * 110.46944 * 81.81238 * 19 18 16 36 36 H 1.08000 * 120.03486 * 0.02562 * 22 21 20 37 37 H 1.08004 * 119.96273 * 180.25398 * 23 22 21 38 38 H 1.08004 * 119.92170 * 179.72760 * 24 23 22 39 39 H 1.07996 * 119.96012 * 180.02562 * 25 24 23 40 40 H 1.08004 * 120.03491 * 180.02562 * 26 25 24 41 41 H 1.08997 * 109.89318 * 239.60464 * 27 20 19 42 42 H 1.09006 * 110.01889 * 118.48786 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0547 -1.2229 -0.2695 9 7 1.3669 -2.3658 0.3404 10 6 0.0921 -2.3143 1.0606 11 6 -1.0445 -2.4489 0.0803 12 8 -0.8135 -2.5743 -1.0991 13 8 -2.3136 -2.4293 0.5172 14 6 1.9083 -3.5556 0.0129 15 8 3.0078 -3.6019 -0.4971 16 6 1.1477 -4.8289 0.2803 17 1 0.3785 -4.6654 1.0351 18 6 0.5272 -5.3826 -1.0295 19 6 0.4237 -6.8952 -0.7115 20 7 1.6381 -7.1996 0.0749 21 6 1.3822 -8.1876 1.0285 22 6 0.8035 -7.8479 2.2448 23 6 0.5475 -8.8279 3.1835 24 6 0.8761 -10.1446 2.9180 25 6 1.4571 -10.4856 1.7103 26 6 1.7106 -9.5113 0.7649 27 6 2.1072 -5.9568 0.7145 28 1 -0.4850 0.8400 0.0004 29 1 0.0489 -3.1309 1.7814 30 1 0.0091 -1.3623 1.5847 31 1 -3.0087 -2.5186 -0.1491 32 1 -0.4584 -4.9525 -1.2070 33 1 1.1872 -5.2065 -1.8789 34 1 0.4128 -7.4768 -1.6333 35 1 -0.4707 -7.1007 -0.1234 36 1 0.5504 -6.8191 2.4544 37 1 0.0938 -8.5650 4.1278 38 1 0.6788 -10.9084 3.6557 39 1 1.7120 -11.5149 1.5060 40 1 2.1640 -9.7784 -0.1783 41 1 3.1206 -5.7292 0.3839 42 1 2.0863 -6.0643 1.7990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:24 Heat of formation + Delta-G solvation = -65.935742 kcal Electronic energy + Delta-G solvation = -27451.487635 eV Core-core repulsion = 23590.449721 eV Total energy + Delta-G solvation = -3861.037914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44201 -39.44681 -38.39756 -37.11499 -35.29815 -34.55723 -32.48039 -31.63663 -31.01256 -29.01393 -28.31483 -27.72513 -25.10520 -23.07941 -22.39746 -21.65886 -21.09874 -20.46877 -18.58410 -17.56588 -17.24791 -17.05803 -16.68410 -15.85938 -15.64850 -15.39086 -14.73112 -14.62924 -14.43194 -14.13662 -13.95154 -13.54351 -13.46374 -13.35918 -12.91723 -12.51456 -12.24024 -12.10938 -11.95849 -11.69791 -11.66078 -11.43522 -11.23417 -11.04411 -11.01427 -10.76797 -10.62067 -10.44774 -10.37255 -10.19103 -9.70907 -9.10982 -9.00518 -8.97208 -8.54270 -8.09964 -7.95079 -6.48678 -3.96550 1.26249 1.36018 3.08989 3.21683 3.28825 3.35032 3.58268 3.69696 3.93180 4.01242 4.16312 4.63561 4.85446 4.88237 4.90765 4.98236 5.06753 5.17708 5.23172 5.39488 5.45255 5.49909 5.62134 5.63593 5.72028 5.79947 5.92381 5.98437 6.08628 6.23709 6.33025 6.37280 6.39984 6.45968 6.50998 6.56460 6.62498 6.79851 6.95576 7.41396 7.49112 7.50168 7.93498 8.31465 8.94737 9.03403 9.24775 9.77779 10.59464 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.003662 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.679783 B = 7643.427296 C = 8066.163423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.028 3.972 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.109 0.891 9 N -0.432 5.432 10 C 0.144 3.856 11 C 0.489 3.511 12 O -0.503 6.503 13 O -0.534 6.534 14 C 0.475 3.525 15 O -0.569 6.569 16 C -0.127 4.127 17 H 0.079 0.921 18 C -0.103 4.103 19 C 0.052 3.948 20 N -0.493 5.493 21 C 0.098 3.902 22 C -0.156 4.156 23 C -0.108 4.108 24 C -0.135 4.135 25 C -0.113 4.113 26 C -0.106 4.106 27 C 0.055 3.945 28 H 0.270 0.730 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.392 0.608 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -14.159 6.425 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.174 4.174 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.428 4.428 8 H 0.126 0.874 9 N -0.151 5.151 10 C 0.017 3.983 11 C 0.329 3.671 12 O -0.388 6.388 13 O -0.345 6.345 14 C 0.263 3.737 15 O -0.452 6.452 16 C -0.150 4.150 17 H 0.097 0.903 18 C -0.142 4.142 19 C -0.073 4.073 20 N -0.213 5.213 21 C 0.003 3.997 22 C -0.176 4.176 23 C -0.127 4.127 24 C -0.153 4.153 25 C -0.132 4.132 26 C -0.125 4.125 27 C -0.072 4.072 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.248 0.752 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.508 -14.172 5.768 15.698 hybrid contribution -1.060 1.310 0.043 1.686 sum -4.568 -12.862 5.812 14.835 Atomic orbital electron populations 1.69746 1.06001 1.27804 1.49441 1.25245 0.95448 0.99974 0.96743 0.85768 0.79835 0.80814 0.77745 1.19137 1.20849 1.20562 1.19806 0.95906 0.82617 1.44476 0.87365 1.43439 1.16989 1.05461 1.49199 1.20794 0.81221 1.04715 0.91533 1.23882 0.82489 0.70633 0.90050 1.90606 1.84399 1.45092 1.18707 1.84536 1.17788 1.86594 1.45614 1.19661 0.87668 0.84072 0.82304 1.90531 1.21194 1.86473 1.47000 1.22469 0.98254 0.95310 0.98935 0.90303 1.22584 1.01880 0.92586 0.97125 1.23120 0.89828 0.96736 0.97653 1.61182 1.30137 1.07905 1.22111 1.19176 0.96241 0.92825 0.91443 1.21733 1.00348 1.00063 0.95459 1.21025 0.99705 0.92977 0.99009 1.21112 1.00567 0.96282 0.97374 1.21070 0.99147 0.99112 0.93834 1.21000 1.00065 0.91492 0.99986 1.22980 1.00806 0.85892 0.97528 0.91904 0.90901 0.84710 0.75205 0.90048 0.89731 0.89888 0.93294 0.85900 0.86205 0.86332 0.86020 0.85498 0.88087 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.75 9.18 55.50 0.51 -22.24 16 2 C 0.03 0.70 5.00 -17.47 -0.09 0.62 16 3 Si 0.93 20.32 29.58 -169.99 -5.03 15.29 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.12 9.39 -14.93 -0.14 -8.26 16 8 H 0.11 3.08 7.32 -52.49 -0.38 2.70 16 9 N -0.43 -10.61 2.20 -116.10 -0.25 -10.87 16 10 C 0.14 3.04 4.84 -5.19 -0.03 3.02 16 11 C 0.49 10.33 6.15 36.00 0.22 10.56 16 12 O -0.50 -12.26 15.43 -18.76 -0.29 -12.55 16 13 O -0.53 -9.18 13.42 -39.26 -0.53 -9.71 16 14 C 0.47 11.28 6.40 -10.99 -0.07 11.21 16 15 O -0.57 -15.45 15.55 5.55 0.09 -15.37 16 16 C -0.13 -2.35 2.64 -89.95 -0.24 -2.59 16 17 H 0.08 1.32 5.73 -51.93 -0.30 1.03 16 18 C -0.10 -1.82 6.30 -24.59 -0.16 -1.97 16 19 C 0.05 0.75 6.66 -2.29 -0.02 0.74 16 20 N -0.49 -7.60 5.17 -167.92 -0.87 -8.47 16 21 C 0.10 1.35 4.66 -83.79 -0.39 0.96 16 22 C -0.16 -1.97 8.47 -39.38 -0.33 -2.30 16 23 C -0.11 -1.17 10.04 -39.61 -0.40 -1.56 16 24 C -0.14 -1.34 10.04 -39.55 -0.40 -1.73 16 25 C -0.11 -1.15 10.04 -39.61 -0.40 -1.55 16 26 C -0.11 -1.29 9.97 -39.38 -0.39 -1.68 16 27 C 0.05 0.93 5.89 -2.84 -0.02 0.91 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.07 1.26 6.34 -51.93 -0.33 0.93 16 30 H 0.14 3.00 6.19 -51.93 -0.32 2.68 16 31 H 0.39 5.11 9.10 45.56 0.41 5.53 16 32 H 0.08 1.45 6.87 -51.93 -0.36 1.10 16 33 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.66 7.69 -51.93 -0.40 0.26 16 36 H 0.12 1.53 6.76 -52.49 -0.35 1.18 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 41 H 0.10 1.98 6.98 -51.93 -0.36 1.62 16 42 H 0.06 0.95 5.76 -51.93 -0.30 0.65 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -32.27 343.78 -8.38 -40.65 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.36 Total: 11.72 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -2.84 Total: 6.36 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.61 Total: -41.57 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.73 Total: -37.63 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.27 -8.38 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.281 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds