Wall clock time and date at job start Tue Mar 31 2020 12:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39662 * 120.12813 * 332.32226 * 3 2 1 5 5 C 1.37949 * 119.96191 * 179.97438 * 4 3 2 6 6 C 1.38300 * 120.20965 * 359.72680 * 5 4 3 7 7 C 1.38817 * 120.24908 * 0.55441 * 6 5 4 8 8 O 1.35911 * 119.97939 * 179.72471 * 7 6 5 9 9 C 1.42902 * 116.99791 * 359.71919 * 8 7 6 10 10 C 1.53005 * 109.46826 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47053 * 175.69793 * 10 9 8 12 12 N 1.46504 * 109.47185 * 184.08302 * 11 10 9 13 13 C 1.36941 * 119.99259 * 84.57884 * 12 11 10 14 14 H 1.07993 * 120.00142 * 320.19541 * 13 12 11 15 15 C 1.38811 * 119.99392 * 140.19738 * 13 12 11 16 16 N 1.31619 * 120.00024 * 156.67781 * 15 13 12 17 17 Si 1.86803 * 120.00334 * 336.67325 * 15 13 12 18 18 H 1.48498 * 109.47415 * 95.20181 * 17 15 13 19 19 H 1.48505 * 109.47160 * 215.20520 * 17 15 13 20 20 H 1.48503 * 109.47029 * 335.20138 * 17 15 13 21 21 C 1.46494 * 120.00262 * 264.58064 * 12 11 10 22 22 C 1.52993 * 109.47069 * 89.99857 * 21 12 11 23 23 C 1.50703 * 109.46886 * 179.97438 * 22 21 12 24 24 O 1.20829 * 120.00386 * 0.02562 * 23 22 21 25 25 O 1.34237 * 119.99797 * 180.02562 * 23 22 21 26 26 C 1.38478 * 120.03465 * 359.44363 * 7 6 5 27 27 H 1.07999 * 120.01774 * 359.96143 * 4 3 2 28 28 H 1.08001 * 119.89679 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.87188 * 180.27018 * 6 5 4 30 30 H 1.08997 * 109.47490 * 300.00174 * 9 8 7 31 31 H 1.08999 * 109.47026 * 60.00521 * 9 8 7 32 32 H 1.09001 * 109.46894 * 295.70110 * 10 9 8 33 33 H 1.08997 * 109.47003 * 55.69799 * 10 9 8 34 34 H 1.09000 * 109.47588 * 304.08701 * 11 10 9 35 35 H 1.09002 * 109.47131 * 64.08996 * 11 10 9 36 36 H 0.97002 * 120.00532 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46798 * 210.00384 * 21 12 11 38 38 H 1.09002 * 109.46923 * 329.99681 * 21 12 11 39 39 H 1.09000 * 109.47285 * 299.99674 * 22 21 12 40 40 H 1.09002 * 109.47392 * 60.00111 * 22 21 12 41 41 H 0.96701 * 116.99561 * 180.02562 * 25 23 22 42 42 H 1.08003 * 120.10034 * 180.25211 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.0688 0.5611 5 6 4.6490 -1.0649 0.5588 6 6 5.3409 -0.0073 -0.0029 7 6 4.6525 1.0629 -0.5577 8 8 5.3381 2.1020 -1.1032 9 6 6.7647 2.0292 -1.0652 10 6 7.3567 3.2787 -1.7204 11 6 8.8804 3.2525 -1.5846 12 7 9.4403 4.4939 -2.1247 13 6 9.5124 5.6119 -1.3371 14 1 8.7008 5.8536 -0.6670 15 6 10.6289 6.4343 -1.4002 16 7 10.5391 7.6951 -1.0334 17 14 12.2590 5.7516 -2.0055 18 1 12.4091 6.0400 -3.4544 19 1 13.3715 6.3888 -1.2560 20 1 12.2923 4.2831 -1.7871 21 6 9.9229 4.5394 -3.5071 22 6 8.7779 4.9536 -4.4336 23 6 9.2746 5.0009 -5.8556 24 8 10.4260 4.7306 -6.1028 25 8 8.4377 5.3434 -6.8477 26 6 3.2678 1.0696 -0.5610 27 1 2.7322 -1.8982 0.9967 28 1 5.1904 -1.8926 0.9926 29 1 6.4209 -0.0119 -0.0056 30 1 7.0981 1.9700 -0.0292 31 1 7.0978 1.1429 -1.6053 32 1 7.0862 3.2982 -2.7761 33 1 6.9634 4.1681 -1.2280 34 1 9.1500 3.1598 -0.5325 35 1 9.2799 2.4028 -2.1383 36 1 11.3192 8.2700 -1.0778 37 1 10.7337 5.2636 -3.5852 38 1 10.2868 3.5538 -3.7974 39 1 7.9671 4.2293 -4.3554 40 1 8.4140 5.9392 -4.1432 41 1 8.8019 5.3593 -7.7434 42 1 2.7311 1.8997 -0.9961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:26 Heat of formation + Delta-G solvation = -58.155438 kcal Electronic energy + Delta-G solvation = -25145.509183 eV Core-core repulsion = 21284.808649 eV Total energy + Delta-G solvation = -3860.700535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.43440 -39.89940 -38.20833 -36.77973 -36.39619 -35.76669 -32.90898 -31.88866 -31.66790 -30.52962 -29.61539 -26.09743 -24.81119 -24.19272 -22.79661 -22.12411 -20.63666 -20.42450 -19.47465 -17.86122 -16.94171 -16.81347 -16.44684 -16.23908 -16.14199 -15.99339 -15.86105 -15.07373 -14.49974 -14.35166 -14.14695 -13.73432 -13.64063 -13.47774 -13.23243 -12.97757 -12.85832 -12.55780 -12.37511 -12.17228 -12.03722 -11.89779 -11.82892 -11.43929 -11.25112 -11.02210 -10.87825 -10.74833 -10.65611 -10.28614 -10.08941 -9.93525 -9.61975 -9.36906 -8.60684 -8.53018 -7.01033 -6.13098 -3.60110 0.41189 1.05758 2.31716 2.55199 2.65077 3.00128 3.31367 3.40003 3.44602 3.48734 3.55365 3.65346 4.43438 4.44357 4.68034 4.72211 4.83661 4.93163 5.05084 5.12704 5.15479 5.24138 5.48256 5.48803 5.53737 5.62601 5.79851 5.81228 5.84012 5.95368 5.99366 6.00310 6.09238 6.22379 6.29041 6.48327 6.54443 6.65963 6.77630 6.81273 7.15336 7.24645 7.91158 8.19270 8.26877 8.83269 9.56706 9.94944 11.01012 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.002598 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.573215 B =10773.272199 C =11763.524008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.259 3.741 3 C 0.007 3.993 4 C -0.116 4.116 5 C -0.079 4.079 6 C -0.181 4.181 7 C 0.140 3.860 8 O -0.309 6.309 9 C 0.060 3.940 10 C -0.140 4.140 11 C 0.151 3.849 12 N -0.596 5.596 13 C -0.283 4.283 14 H 0.081 0.919 15 C 0.046 3.954 16 N -0.890 5.890 17 Si 0.870 3.130 18 H -0.280 1.280 19 H -0.299 1.299 20 H -0.267 1.267 21 C 0.147 3.853 22 C -0.132 4.132 23 C 0.478 3.522 24 O -0.524 6.524 25 O -0.523 6.523 26 C -0.109 4.109 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.266 0.734 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.400 0.600 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.817 -15.815 -1.320 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.057 4.057 3 C 0.004 3.996 4 C -0.136 4.136 5 C -0.097 4.097 6 C -0.201 4.201 7 C 0.093 3.907 8 O -0.222 6.222 9 C -0.015 4.015 10 C -0.180 4.180 11 C 0.024 3.976 12 N -0.317 5.317 13 C -0.411 4.411 14 H 0.099 0.901 15 C -0.157 4.157 16 N -0.529 5.529 17 Si 0.699 3.301 18 H -0.207 1.207 19 H -0.227 1.227 20 H -0.192 1.192 21 C 0.021 3.979 22 C -0.173 4.173 23 C 0.321 3.679 24 O -0.412 6.412 25 O -0.335 6.335 26 C -0.130 4.130 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.258 0.742 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.375 -15.530 -1.004 18.704 hybrid contribution 1.746 -0.254 -0.943 2.000 sum -8.629 -15.784 -1.947 18.094 Atomic orbital electron populations 1.81262 1.12016 1.07575 1.08310 1.25625 0.92554 0.93725 0.93756 1.15634 0.84147 0.96662 1.03176 1.21028 0.94327 0.97640 1.00651 1.20887 0.93403 0.97920 0.97504 1.21620 1.01272 0.94842 1.02343 1.18811 0.91260 0.87613 0.93001 1.86168 1.21388 1.40140 1.74485 1.23044 0.76440 1.00693 1.01358 1.22352 0.98836 0.95950 1.00818 1.20794 0.89623 0.88497 0.98678 1.44061 1.72313 1.08661 1.06673 1.18688 1.01725 0.99390 1.21338 0.90143 1.25508 0.97762 0.95325 0.97083 1.69884 1.30174 1.04032 1.48831 0.87016 0.84976 0.80200 0.77885 1.20725 1.22695 1.19162 1.21110 0.93507 0.99795 0.83485 1.22349 1.03173 1.06220 0.85531 1.24188 0.83659 0.71450 0.88607 1.90685 1.19806 1.45934 1.84803 1.84626 1.46738 1.81930 1.20166 1.20376 0.91458 0.98964 1.02200 0.85016 0.84675 0.84408 0.91677 0.92141 0.91691 0.90171 0.92296 0.93893 0.92456 0.91659 0.93241 0.88498 0.86965 0.74234 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.15 18.54 41.84 0.78 -4.37 16 2 C 0.26 2.63 15.33 -22.47 -0.34 2.28 16 3 C 0.01 0.06 5.73 -106.96 -0.61 -0.55 16 4 C -0.12 -0.79 9.75 -39.16 -0.38 -1.18 16 5 C -0.08 -0.51 10.03 -39.66 -0.40 -0.91 16 6 C -0.18 -1.46 9.03 -39.34 -0.36 -1.82 16 7 C 0.14 1.41 6.68 -39.28 -0.26 1.15 16 8 O -0.31 -3.72 10.13 -19.46 -0.20 -3.92 16 9 C 0.06 0.66 4.74 37.16 0.18 0.84 16 10 C -0.14 -1.97 5.88 -26.73 -0.16 -2.13 16 11 C 0.15 2.46 5.72 -4.04 -0.02 2.44 16 12 N -0.60 -12.50 2.04 -173.25 -0.35 -12.85 16 13 C -0.28 -7.18 9.87 -15.06 -0.15 -7.33 16 14 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 15 C 0.05 1.24 5.27 -17.43 -0.09 1.14 16 16 N -0.89 -25.76 13.97 55.49 0.78 -24.99 16 17 Si 0.87 21.40 25.24 -169.99 -4.29 17.11 16 18 H -0.28 -6.99 6.67 56.52 0.38 -6.62 16 19 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.15 2.97 3.85 -4.05 -0.02 2.96 16 22 C -0.13 -2.27 6.13 -27.89 -0.17 -2.44 16 23 C 0.48 7.95 8.33 36.01 0.30 8.25 16 24 O -0.52 -10.26 16.74 -18.75 -0.31 -10.57 16 25 O -0.52 -6.88 13.42 -39.27 -0.53 -7.41 16 26 C -0.11 -1.03 9.69 -39.01 -0.38 -1.40 16 27 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 29 H 0.14 0.94 6.28 -52.49 -0.33 0.61 16 30 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 31 H 0.06 0.56 7.64 -51.93 -0.40 0.16 16 32 H 0.06 0.90 6.76 -51.93 -0.35 0.55 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.04 0.62 7.83 -51.93 -0.41 0.21 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 1.53 3.60 -51.93 -0.19 1.34 16 38 H 0.05 0.93 7.82 -51.93 -0.41 0.52 16 39 H 0.10 1.43 6.76 -51.93 -0.35 1.08 16 40 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 41 H 0.40 3.40 9.10 45.56 0.41 3.81 16 42 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -32.26 365.37 -6.02 -38.28 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.53 Total: 1.91 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.86 Total: 1.31 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 1.20 Total: -42.21 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -1.04 Total: -21.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.29 Total: 17.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.26 -6.02 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.879 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds