Wall clock time and date at job start Tue Mar 31 2020 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39662 * 120.12813 * 332.32226 * 3 2 1 5 5 C 1.37949 * 119.96191 * 179.97438 * 4 3 2 6 6 C 1.38300 * 120.20965 * 359.72680 * 5 4 3 7 7 C 1.38817 * 120.24908 * 0.55441 * 6 5 4 8 8 O 1.35911 * 119.97939 * 179.72471 * 7 6 5 9 9 C 1.42902 * 116.99791 * 359.71919 * 8 7 6 10 10 C 1.53005 * 109.46826 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47053 * 175.69793 * 10 9 8 12 12 N 1.46504 * 109.47185 * 184.08302 * 11 10 9 13 13 C 1.36941 * 119.99259 * 84.57884 * 12 11 10 14 14 H 1.07993 * 120.00142 * 320.19541 * 13 12 11 15 15 C 1.38811 * 119.99392 * 140.19738 * 13 12 11 16 16 N 1.31619 * 120.00024 * 156.67781 * 15 13 12 17 17 Si 1.86803 * 120.00334 * 336.67325 * 15 13 12 18 18 H 1.48498 * 109.47415 * 95.20181 * 17 15 13 19 19 H 1.48505 * 109.47160 * 215.20520 * 17 15 13 20 20 H 1.48503 * 109.47029 * 335.20138 * 17 15 13 21 21 C 1.46494 * 120.00262 * 264.58064 * 12 11 10 22 22 C 1.52993 * 109.47069 * 89.99857 * 21 12 11 23 23 C 1.50703 * 109.46886 * 179.97438 * 22 21 12 24 24 O 1.20829 * 120.00386 * 0.02562 * 23 22 21 25 25 O 1.34237 * 119.99797 * 180.02562 * 23 22 21 26 26 C 1.38478 * 120.03465 * 359.44363 * 7 6 5 27 27 H 1.07999 * 120.01774 * 359.96143 * 4 3 2 28 28 H 1.08001 * 119.89679 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.87188 * 180.27018 * 6 5 4 30 30 H 1.08997 * 109.47490 * 300.00174 * 9 8 7 31 31 H 1.08999 * 109.47026 * 60.00521 * 9 8 7 32 32 H 1.09001 * 109.46894 * 295.70110 * 10 9 8 33 33 H 1.08997 * 109.47003 * 55.69799 * 10 9 8 34 34 H 1.09000 * 109.47588 * 304.08701 * 11 10 9 35 35 H 1.09002 * 109.47131 * 64.08996 * 11 10 9 36 36 H 0.97002 * 120.00532 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46798 * 210.00384 * 21 12 11 38 38 H 1.09002 * 109.46923 * 329.99681 * 21 12 11 39 39 H 1.09000 * 109.47285 * 299.99674 * 22 21 12 40 40 H 1.09002 * 109.47392 * 60.00111 * 22 21 12 41 41 H 0.96701 * 116.99561 * 180.02562 * 25 23 22 42 42 H 1.08003 * 120.10034 * 180.25211 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.0688 0.5611 5 6 4.6490 -1.0649 0.5588 6 6 5.3409 -0.0073 -0.0029 7 6 4.6525 1.0629 -0.5577 8 8 5.3381 2.1020 -1.1032 9 6 6.7647 2.0292 -1.0652 10 6 7.3567 3.2787 -1.7204 11 6 8.8804 3.2525 -1.5846 12 7 9.4403 4.4939 -2.1247 13 6 9.5124 5.6119 -1.3371 14 1 8.7008 5.8536 -0.6670 15 6 10.6289 6.4343 -1.4002 16 7 10.5391 7.6951 -1.0334 17 14 12.2590 5.7516 -2.0055 18 1 12.4091 6.0400 -3.4544 19 1 13.3715 6.3888 -1.2560 20 1 12.2923 4.2831 -1.7871 21 6 9.9229 4.5394 -3.5071 22 6 8.7779 4.9536 -4.4336 23 6 9.2746 5.0009 -5.8556 24 8 10.4260 4.7306 -6.1028 25 8 8.4377 5.3434 -6.8477 26 6 3.2678 1.0696 -0.5610 27 1 2.7322 -1.8982 0.9967 28 1 5.1904 -1.8926 0.9926 29 1 6.4209 -0.0119 -0.0056 30 1 7.0981 1.9700 -0.0292 31 1 7.0978 1.1429 -1.6053 32 1 7.0862 3.2982 -2.7761 33 1 6.9634 4.1681 -1.2280 34 1 9.1500 3.1598 -0.5325 35 1 9.2799 2.4028 -2.1383 36 1 11.3192 8.2700 -1.0778 37 1 10.7337 5.2636 -3.5852 38 1 10.2868 3.5538 -3.7974 39 1 7.9671 4.2293 -4.3554 40 1 8.4140 5.9392 -4.1432 41 1 8.8019 5.3593 -7.7434 42 1 2.7311 1.8997 -0.9961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:25 Heat of formation + Delta-G solvation = -78.388034 kcal Electronic energy + Delta-G solvation = -25146.386534 eV Core-core repulsion = 21284.808649 eV Total energy + Delta-G solvation = -3861.577886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22336 -41.12637 -39.02187 -38.22459 -37.26122 -37.03062 -34.34283 -33.57600 -32.32654 -31.68336 -30.67304 -27.36203 -26.41417 -25.07279 -23.57780 -23.24175 -21.93404 -21.87009 -20.22269 -19.22509 -18.52476 -17.67122 -17.60784 -17.29979 -17.09248 -16.98830 -16.89905 -16.65927 -15.76080 -15.31503 -15.00048 -14.98272 -14.75272 -14.54213 -14.38524 -14.23918 -14.07230 -13.78393 -13.62134 -13.51127 -13.24296 -12.92169 -12.72969 -12.60485 -12.52078 -12.46025 -12.37535 -11.90474 -11.85052 -11.73726 -11.62229 -11.52749 -11.17140 -10.62037 -9.99468 -9.20434 -8.78079 -8.21116 -5.61913 -0.24172 0.45277 1.23612 1.36380 1.43616 1.52037 1.52497 1.92052 2.14868 2.23764 2.43183 2.89684 2.90283 3.08782 3.45349 3.85641 4.03997 4.11265 4.12150 4.14037 4.19901 4.25808 4.38608 4.51720 4.53324 4.59505 4.64840 4.69873 4.78647 4.92737 4.95173 4.99403 5.13846 5.23009 5.34355 5.37186 5.42859 5.55216 5.63265 5.70035 5.95563 6.23967 6.37748 6.50385 6.97599 7.05636 7.62500 8.04812 8.97559 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.002598 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.573215 B =10773.272199 C =11763.524008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.281 3.719 3 C -0.003 4.003 4 C -0.103 4.103 5 C -0.072 4.072 6 C -0.177 4.177 7 C 0.116 3.884 8 O -0.333 6.333 9 C 0.066 3.934 10 C -0.128 4.128 11 C 0.147 3.853 12 N -0.608 5.608 13 C -0.254 4.254 14 H 0.051 0.949 15 C -0.008 4.008 16 N -0.940 5.940 17 Si 0.926 3.074 18 H -0.289 1.289 19 H -0.309 1.309 20 H -0.251 1.251 21 C 0.145 3.855 22 C -0.126 4.126 23 C 0.489 3.511 24 O -0.555 6.555 25 O -0.512 6.512 26 C -0.119 4.119 27 H 0.156 0.844 28 H 0.169 0.831 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.262 0.738 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.424 0.576 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 -19.287 -1.838 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.034 4.034 3 C -0.006 4.006 4 C -0.124 4.124 5 C -0.090 4.090 6 C -0.196 4.196 7 C 0.071 3.929 8 O -0.247 6.247 9 C -0.009 4.009 10 C -0.168 4.168 11 C 0.022 3.978 12 N -0.330 5.330 13 C -0.384 4.384 14 H 0.068 0.932 15 C -0.205 4.205 16 N -0.583 5.583 17 Si 0.756 3.244 18 H -0.217 1.217 19 H -0.238 1.238 20 H -0.175 1.175 21 C 0.019 3.981 22 C -0.166 4.166 23 C 0.333 3.667 24 O -0.447 6.447 25 O -0.325 6.325 26 C -0.140 4.140 27 H 0.173 0.827 28 H 0.187 0.813 29 H 0.172 0.828 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.143 0.857 40 H 0.113 0.887 41 H 0.286 0.714 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.327 -19.053 -1.555 21.728 hybrid contribution 1.595 0.748 -0.822 1.944 sum -8.732 -18.305 -2.377 20.420 Atomic orbital electron populations 1.81279 1.13291 1.09100 1.10054 1.25838 0.92711 0.92393 0.92410 1.15670 0.83175 0.97422 1.04372 1.21372 0.94807 0.97236 0.98968 1.21269 0.93174 0.98171 0.96385 1.21888 1.02189 0.94271 1.01259 1.18947 0.91322 0.88126 0.94528 1.86095 1.21672 1.41515 1.75401 1.22918 0.76335 0.99735 1.01945 1.22064 0.97307 0.96410 1.01051 1.20977 0.90715 0.87258 0.98845 1.44158 1.72779 1.09088 1.06976 1.18569 0.99913 1.00118 1.19796 0.93156 1.26016 1.00433 0.95503 0.98583 1.69994 1.30633 1.05352 1.52354 0.86109 0.81613 0.80206 0.76501 1.21702 1.23781 1.17496 1.21040 0.93585 0.99934 0.83565 1.22096 1.02662 1.05984 0.85837 1.23840 0.83134 0.70803 0.88935 1.90685 1.21061 1.47602 1.85336 1.84546 1.45781 1.80904 1.21248 1.20387 0.91668 0.99261 1.02726 0.82678 0.81317 0.82812 0.90773 0.89407 0.91323 0.93471 0.92560 0.90642 0.92861 0.94996 0.91199 0.85683 0.88696 0.71440 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.34 18.54 19.00 0.35 -10.99 16 2 C 0.28 5.50 15.33 88.33 1.35 6.85 16 3 C 0.00 -0.05 5.73 -21.38 -0.12 -0.17 16 4 C -0.10 -1.07 9.75 22.55 0.22 -0.85 16 5 C -0.07 -0.63 10.03 22.22 0.22 -0.40 16 6 C -0.18 -2.24 9.03 22.42 0.20 -2.04 16 7 C 0.12 2.14 6.68 22.47 0.15 2.29 16 8 O -0.33 -7.57 10.13 -92.55 -0.94 -8.51 16 9 C 0.07 1.28 4.74 71.98 0.34 1.62 16 10 C -0.13 -3.42 5.88 30.59 0.18 -3.25 16 11 C 0.15 4.46 5.72 86.38 0.49 4.96 16 12 N -0.61 -24.88 2.04 -702.03 -1.43 -26.31 16 13 C -0.25 -13.09 9.87 84.03 0.83 -12.26 16 14 H 0.05 2.87 8.06 -2.91 -0.02 2.84 16 15 C -0.01 -0.43 5.27 84.86 0.45 0.02 16 16 N -0.94 -56.48 13.97 21.65 0.30 -56.18 16 17 Si 0.93 45.06 25.24 68.60 1.73 46.80 16 18 H -0.29 -14.36 6.67 99.48 0.66 -13.69 16 19 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 20 H -0.25 -11.38 7.11 99.48 0.71 -10.67 16 21 C 0.14 5.62 3.85 86.38 0.33 5.96 16 22 C -0.13 -4.12 6.13 29.85 0.18 -3.94 16 23 C 0.49 15.29 8.33 71.24 0.59 15.89 16 24 O -0.56 -20.86 16.74 21.95 0.37 -20.49 16 25 O -0.51 -12.06 13.42 -51.48 -0.69 -12.75 16 26 C -0.12 -2.15 9.69 22.64 0.22 -1.93 16 27 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 28 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 29 H 0.15 1.42 6.28 -2.91 -0.02 1.40 16 30 H 0.07 1.30 7.67 -2.39 -0.02 1.28 16 31 H 0.09 1.25 7.64 -2.39 -0.02 1.23 16 32 H 0.07 1.76 6.76 -2.39 -0.02 1.74 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.08 1.85 7.83 -2.39 -0.02 1.83 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.03 1.47 3.60 -2.39 -0.01 1.46 16 38 H 0.07 2.43 7.82 -2.39 -0.02 2.41 16 39 H 0.13 3.36 6.76 -2.39 -0.02 3.35 16 40 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.42 5.90 9.10 -74.06 -0.67 5.22 16 42 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -72.86 365.37 5.69 -67.17 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.35 Total: 8.51 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 5.65 Total: 12.76 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -0.77 Total: -93.48 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -1.26 Total: -41.76 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.73 Total: 46.80 kcal Total: -72.86 5.69 -67.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.216 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds