Wall clock time and date at job start Tue Mar 31 2020 13:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27642 * 125.76974 * 2 1 4 4 O 1.41380 * 113.17278 * 179.69567 * 3 2 1 5 5 C 1.44255 * 107.50353 * 17.37144 * 4 3 2 6 6 C 1.53006 * 111.04536 * 216.80915 * 5 4 3 7 7 C 1.50707 * 111.01326 * 92.95756 * 5 4 3 8 8 O 1.21282 * 119.99896 * 222.84133 * 7 5 4 9 9 N 1.34776 * 119.99741 * 42.83440 * 7 5 4 10 10 C 1.46503 * 119.99809 * 180.02562 * 9 7 5 11 11 C 1.50696 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.38324 * 119.96913 * 270.02083 * 11 10 9 13 13 C 1.38279 * 120.14094 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.06721 * 359.96268 * 13 12 11 15 15 C 1.38856 * 119.93198 * 0.04276 * 14 13 12 16 16 O 1.35752 * 120.06860 * 180.25340 * 15 14 13 17 17 C 1.34835 * 116.99867 * 354.17463 * 16 15 14 18 18 H 1.08001 * 119.99908 * 5.03572 * 17 16 15 19 19 C 1.38654 * 119.99862 * 185.04415 * 17 16 15 20 20 N 1.31552 * 120.00015 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47583 * 89.99816 * 21 19 17 23 23 H 1.48496 * 109.47072 * 210.00091 * 21 19 17 24 24 H 1.48500 * 109.47137 * 329.99829 * 21 19 17 25 25 C 1.38083 * 119.96288 * 90.00210 * 11 10 9 26 26 C 1.51683 * 125.76576 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.46990 * 269.97940 * 1 2 3 28 28 H 1.09006 * 109.46747 * 29.97308 * 1 2 3 29 29 H 1.08993 * 109.47028 * 149.97343 * 1 2 3 30 30 H 1.08996 * 109.46793 * 295.37989 * 6 5 4 31 31 H 1.08999 * 109.46717 * 55.38006 * 6 5 4 32 32 H 1.08997 * 109.47382 * 175.37727 * 6 5 4 33 33 H 0.97002 * 120.00166 * 0.02562 * 9 7 5 34 34 H 1.09001 * 109.46694 * 60.00402 * 10 9 7 35 35 H 1.09003 * 109.46919 * 300.00368 * 10 9 7 36 36 H 1.08001 * 119.92520 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.96556 * 179.97438 * 13 12 11 38 38 H 1.08007 * 120.03346 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00173 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.03860 * 359.97438 * 25 11 10 41 41 H 1.09001 * 110.80572 * 46.46033 * 26 2 1 42 42 H 1.08999 * 110.97930 * 283.02516 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6329 0.7273 0.0069 5 6 3.7717 -0.6500 -0.3990 6 6 4.9006 -1.3385 0.3708 7 6 3.9930 -0.7555 -1.8860 8 8 3.4124 -1.6059 -2.5266 9 7 4.8362 0.0954 -2.5038 10 6 5.0509 -0.0068 -3.9494 11 6 6.0311 1.0507 -4.3875 12 6 5.5747 2.2972 -4.7764 13 6 6.4710 3.2704 -5.1786 14 6 7.8255 3.0004 -5.1924 15 6 8.2868 1.7501 -4.8028 16 8 9.6179 1.4834 -4.8104 17 6 10.4292 2.4319 -5.3205 18 1 10.0217 3.3849 -5.6240 19 6 11.7866 2.1836 -5.4554 20 7 12.5782 3.1088 -5.9536 21 14 12.4915 0.5354 -4.9299 22 1 12.4580 -0.4060 -6.0778 23 1 13.8949 0.7180 -4.4802 24 1 11.6819 -0.0159 -3.8138 25 6 7.3839 0.7744 -4.4000 26 6 2.3936 -1.2308 -0.0006 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 5.8521 -0.8730 0.1139 31 1 4.7241 -1.2378 1.4417 32 1 4.9297 -2.3952 0.1052 33 1 5.3008 0.7754 -1.9913 34 1 4.1035 0.1380 -4.4685 35 1 5.4495 -0.9927 -4.1886 36 1 4.5161 2.5108 -4.7659 37 1 6.1115 4.2426 -5.4821 38 1 8.5251 3.7611 -5.5063 39 1 13.5279 2.9352 -6.0476 40 1 7.7397 -0.1988 -4.0956 41 1 2.0503 -1.9548 -0.7395 42 1 2.4355 -1.6819 0.9908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646493433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:43 Heat of formation + Delta-G solvation = -19.293025 kcal Electronic energy + Delta-G solvation = -25850.907209 eV Core-core repulsion = 21991.891875 eV Total energy + Delta-G solvation = -3859.015334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26038 -39.46834 -38.84966 -37.00330 -34.86976 -34.32366 -32.83479 -32.44950 -30.87103 -29.43045 -28.81339 -27.56543 -26.36354 -25.20479 -23.36213 -21.84400 -20.81406 -20.73765 -19.90673 -18.14282 -17.71796 -17.05666 -16.60350 -16.18589 -15.67958 -15.35986 -15.07834 -14.96831 -14.41836 -14.13778 -14.05389 -13.85061 -13.75823 -13.46417 -13.45350 -13.05254 -12.98529 -12.71012 -12.63000 -12.59352 -12.40555 -12.21560 -12.05963 -11.64086 -11.48275 -10.98696 -10.94606 -10.89297 -10.78371 -10.39716 -10.21987 -9.61622 -9.47255 -9.16368 -8.93733 -8.34972 -7.49342 -6.47012 -4.14427 1.45948 1.77252 2.14158 2.29839 2.66827 3.06420 3.18736 3.22294 3.36053 3.68114 4.01499 4.06424 4.18803 4.30743 4.47830 4.60245 4.64106 4.93545 5.01280 5.01948 5.08012 5.09616 5.12848 5.15239 5.26128 5.37316 5.45398 5.59312 5.65081 5.70390 5.72382 5.77432 5.99550 6.13219 6.29107 6.40032 6.65812 6.97725 7.00953 7.09358 7.19365 7.37487 7.49413 7.72272 7.96449 7.97164 8.87792 9.48536 10.60437 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.002727 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.432820 B =10264.769285 C =10870.481782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.087 3.913 3 N -0.291 5.291 4 O -0.185 6.185 5 C 0.050 3.950 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.538 6.538 9 N -0.703 5.703 10 C 0.166 3.834 11 C -0.077 4.077 12 C -0.184 4.184 13 C -0.077 4.077 14 C -0.211 4.211 15 C 0.156 3.844 16 O -0.216 6.216 17 C -0.391 4.391 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.877 5.877 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.171 4.171 26 C -0.138 4.138 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.280 0.720 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.964 -8.413 12.234 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 N -0.034 5.034 4 O -0.202 6.202 5 C 0.006 3.994 6 C -0.196 4.196 7 C 0.294 3.706 8 O -0.416 6.416 9 N -0.353 5.353 10 C 0.044 3.956 11 C -0.078 4.078 12 C -0.203 4.203 13 C -0.095 4.095 14 C -0.230 4.230 15 C 0.104 3.896 16 O -0.121 6.121 17 C -0.467 4.467 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.515 5.515 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.190 4.190 26 C -0.178 4.178 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.752 -7.931 11.817 25.163 hybrid contribution 0.887 -0.949 0.201 1.314 sum -19.865 -8.880 12.018 24.858 Atomic orbital electron populations 1.20445 0.85080 1.04753 1.04168 1.26357 0.98390 0.92197 0.93661 1.77964 0.88762 1.22877 1.13760 1.91342 1.16420 1.25591 1.86877 1.23203 0.98271 0.85301 0.92661 1.21815 0.96619 1.00763 1.00371 1.20480 0.79484 0.81696 0.88958 1.90695 1.48940 1.35833 1.66152 1.46082 1.44914 1.34825 1.09482 1.20217 0.97950 0.97912 0.79518 1.19222 0.92646 0.94577 1.01313 1.20554 0.98701 0.93671 1.07377 1.20808 0.92791 0.98245 0.97639 1.21377 0.96076 0.98006 1.07549 1.19042 0.84198 0.92710 0.93628 1.83574 1.12471 1.44180 1.71829 1.20765 0.89032 0.95519 1.41348 0.87582 1.24469 0.94794 0.99017 0.95660 1.69640 1.05557 1.33698 1.42605 0.86179 0.78076 0.82606 0.80028 1.19845 1.20727 1.18375 1.20060 0.91146 0.99051 1.08788 1.23079 0.90155 0.99042 1.05489 0.89091 0.89653 0.89318 0.90249 0.90185 0.89822 0.75449 0.90777 0.90590 0.87316 0.86895 0.84767 0.90966 0.86397 0.86153 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.49 36.01 0.38 -0.06 16 2 C 0.09 0.79 7.45 -78.58 -0.59 0.21 16 3 N -0.29 -3.59 12.45 35.65 0.44 -3.15 16 4 O -0.18 -2.38 11.62 -11.36 -0.13 -2.51 16 5 C 0.05 0.53 1.22 -90.83 -0.11 0.42 16 6 C -0.14 -1.15 8.96 37.16 0.33 -0.82 16 7 C 0.51 6.82 6.83 -10.98 -0.08 6.74 16 8 O -0.54 -8.38 15.71 5.56 0.09 -8.29 16 9 N -0.70 -9.49 5.49 -61.47 -0.34 -9.82 16 10 C 0.17 2.37 5.80 -5.19 -0.03 2.34 16 11 C -0.08 -1.26 5.25 -104.65 -0.55 -1.81 16 12 C -0.18 -2.99 9.70 -39.53 -0.38 -3.37 16 13 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 14 C -0.21 -4.40 9.17 -39.39 -0.36 -4.76 16 15 C 0.16 3.49 6.65 -39.11 -0.26 3.23 16 16 O -0.22 -5.55 8.59 0.03 0.00 -5.55 16 17 C -0.39 -10.82 9.95 30.89 0.31 -10.51 16 18 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 19 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.03 13.96 55.48 0.77 -24.26 16 21 Si 0.91 21.38 28.62 -169.99 -4.86 16.51 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.17 -3.24 9.65 -39.39 -0.38 -3.62 16 26 C -0.14 -1.16 6.12 -26.47 -0.16 -1.33 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.41 5.41 8.21 -40.82 -0.33 5.08 16 34 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.13 2.95 5.64 -52.48 -0.30 2.65 16 39 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.12 1.04 6.94 -51.93 -0.36 0.68 16 42 H 0.11 0.65 7.91 -51.93 -0.41 0.24 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -32.16 362.14 -6.41 -38.57 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.47 Total: 6.45 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.37 Total: -13.40 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.88 Total: -37.23 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.04 Total: -16.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.16 -6.41 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646493433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.278 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds