Wall clock time and date at job start Tue Mar 31 2020 13:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27642 * 125.76974 * 2 1 4 4 O 1.41380 * 113.17278 * 179.69567 * 3 2 1 5 5 C 1.44255 * 107.50353 * 17.37144 * 4 3 2 6 6 C 1.53006 * 111.04536 * 216.80915 * 5 4 3 7 7 C 1.50707 * 111.01326 * 92.95756 * 5 4 3 8 8 O 1.21282 * 119.99896 * 222.84133 * 7 5 4 9 9 N 1.34776 * 119.99741 * 42.83440 * 7 5 4 10 10 C 1.46503 * 119.99809 * 180.02562 * 9 7 5 11 11 C 1.50696 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.38324 * 119.96913 * 270.02083 * 11 10 9 13 13 C 1.38279 * 120.14094 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.06721 * 359.96268 * 13 12 11 15 15 C 1.38856 * 119.93198 * 0.04276 * 14 13 12 16 16 O 1.35752 * 120.06860 * 180.25340 * 15 14 13 17 17 C 1.34835 * 116.99867 * 354.17463 * 16 15 14 18 18 H 1.08001 * 119.99908 * 5.03572 * 17 16 15 19 19 C 1.38654 * 119.99862 * 185.04415 * 17 16 15 20 20 N 1.31552 * 120.00015 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47583 * 89.99816 * 21 19 17 23 23 H 1.48496 * 109.47072 * 210.00091 * 21 19 17 24 24 H 1.48500 * 109.47137 * 329.99829 * 21 19 17 25 25 C 1.38083 * 119.96288 * 90.00210 * 11 10 9 26 26 C 1.51683 * 125.76576 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.46990 * 269.97940 * 1 2 3 28 28 H 1.09006 * 109.46747 * 29.97308 * 1 2 3 29 29 H 1.08993 * 109.47028 * 149.97343 * 1 2 3 30 30 H 1.08996 * 109.46793 * 295.37989 * 6 5 4 31 31 H 1.08999 * 109.46717 * 55.38006 * 6 5 4 32 32 H 1.08997 * 109.47382 * 175.37727 * 6 5 4 33 33 H 0.97002 * 120.00166 * 0.02562 * 9 7 5 34 34 H 1.09001 * 109.46694 * 60.00402 * 10 9 7 35 35 H 1.09003 * 109.46919 * 300.00368 * 10 9 7 36 36 H 1.08001 * 119.92520 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.96556 * 179.97438 * 13 12 11 38 38 H 1.08007 * 120.03346 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00173 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.03860 * 359.97438 * 25 11 10 41 41 H 1.09001 * 110.80572 * 46.46033 * 26 2 1 42 42 H 1.08999 * 110.97930 * 283.02516 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6329 0.7273 0.0069 5 6 3.7717 -0.6500 -0.3990 6 6 4.9006 -1.3385 0.3708 7 6 3.9930 -0.7555 -1.8860 8 8 3.4124 -1.6059 -2.5266 9 7 4.8362 0.0954 -2.5038 10 6 5.0509 -0.0068 -3.9494 11 6 6.0311 1.0507 -4.3875 12 6 5.5747 2.2972 -4.7764 13 6 6.4710 3.2704 -5.1786 14 6 7.8255 3.0004 -5.1924 15 6 8.2868 1.7501 -4.8028 16 8 9.6179 1.4834 -4.8104 17 6 10.4292 2.4319 -5.3205 18 1 10.0217 3.3849 -5.6240 19 6 11.7866 2.1836 -5.4554 20 7 12.5782 3.1088 -5.9536 21 14 12.4915 0.5354 -4.9299 22 1 12.4580 -0.4060 -6.0778 23 1 13.8949 0.7180 -4.4802 24 1 11.6819 -0.0159 -3.8138 25 6 7.3839 0.7744 -4.4000 26 6 2.3936 -1.2308 -0.0006 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 5.8521 -0.8730 0.1139 31 1 4.7241 -1.2378 1.4417 32 1 4.9297 -2.3952 0.1052 33 1 5.3008 0.7754 -1.9913 34 1 4.1035 0.1380 -4.4685 35 1 5.4495 -0.9927 -4.1886 36 1 4.5161 2.5108 -4.7659 37 1 6.1115 4.2426 -5.4821 38 1 8.5251 3.7611 -5.5063 39 1 13.5279 2.9352 -6.0476 40 1 7.7397 -0.1988 -4.0956 41 1 2.0503 -1.9548 -0.7395 42 1 2.4355 -1.6819 0.9908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646493433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:42 Heat of formation + Delta-G solvation = -40.952428 kcal Electronic energy + Delta-G solvation = -25851.846431 eV Core-core repulsion = 21991.891875 eV Total energy + Delta-G solvation = -3859.954556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11466 -41.01944 -39.96354 -38.59975 -36.00962 -35.13389 -34.47400 -33.59792 -32.25198 -31.02910 -29.33645 -28.23714 -27.71817 -27.05755 -24.36883 -23.35568 -22.31616 -21.62089 -20.81341 -19.73717 -19.19806 -18.45172 -17.40039 -17.25783 -16.92312 -16.81229 -16.34712 -16.12641 -15.76478 -15.70417 -15.33563 -14.97667 -14.78043 -14.49003 -14.37242 -14.24563 -14.11334 -13.89531 -13.71261 -13.45040 -13.36228 -13.32148 -13.13334 -13.05061 -12.62576 -12.51068 -12.44199 -12.31850 -11.96858 -11.67278 -11.36991 -11.29190 -10.93855 -10.48989 -10.27906 -9.83516 -9.17231 -8.51901 -6.25138 0.28416 0.59468 0.78643 1.28427 1.30567 1.34107 1.50438 1.90229 2.06045 2.26166 2.74263 2.94360 3.02987 3.09533 3.32546 3.36345 3.52354 3.69920 3.86594 4.00423 4.20240 4.33641 4.41474 4.43203 4.49954 4.54457 4.60159 4.62463 4.64197 4.69070 4.73944 4.85996 4.86656 5.04006 5.13181 5.19692 5.25731 5.33355 5.56721 5.63261 5.70935 5.84989 6.13961 6.20902 6.40488 6.82184 6.91973 7.54763 8.59503 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.002727 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.432820 B =10264.769285 C =10870.481782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.100 3.900 3 N -0.336 5.336 4 O -0.209 6.209 5 C 0.046 3.954 6 C -0.136 4.136 7 C 0.508 3.492 8 O -0.562 6.562 9 N -0.704 5.704 10 C 0.172 3.828 11 C -0.064 4.064 12 C -0.162 4.162 13 C -0.073 4.073 14 C -0.227 4.227 15 C 0.121 3.879 16 O -0.243 6.243 17 C -0.400 4.400 18 H 0.083 0.917 19 C 0.011 3.989 20 N -0.922 5.922 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.262 1.262 25 C -0.168 4.168 26 C -0.136 4.136 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.411 0.589 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.112 0.888 39 H 0.285 0.715 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.065 -10.271 13.698 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 N -0.081 5.081 4 O -0.225 6.225 5 C 0.002 3.998 6 C -0.194 4.194 7 C 0.293 3.707 8 O -0.441 6.441 9 N -0.354 5.354 10 C 0.050 3.950 11 C -0.065 4.065 12 C -0.180 4.180 13 C -0.091 4.091 14 C -0.246 4.246 15 C 0.072 3.928 16 O -0.150 6.150 17 C -0.476 4.476 18 H 0.100 0.900 19 C -0.188 4.188 20 N -0.562 5.562 21 Si 0.792 3.208 22 H -0.191 1.191 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.187 4.187 26 C -0.175 4.175 27 H 0.133 0.867 28 H 0.101 0.899 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.885 -9.784 13.293 29.033 hybrid contribution 1.435 -0.351 -0.230 1.495 sum -22.450 -10.135 13.063 27.881 Atomic orbital electron populations 1.20679 0.82348 1.05598 1.05932 1.27064 0.99939 0.91711 0.90485 1.77981 0.88614 1.24361 1.17194 1.91313 1.17450 1.26592 1.87111 1.23348 1.00369 0.85237 0.90868 1.21864 0.95356 1.00977 1.01155 1.21002 0.78622 0.80879 0.90151 1.90679 1.49748 1.36690 1.67024 1.46061 1.45172 1.35095 1.09078 1.20134 0.97556 0.97058 0.80268 1.19445 0.91901 0.95323 0.99783 1.21005 1.00187 0.92744 1.04105 1.21128 0.91246 1.00042 0.96721 1.21411 0.97523 0.97280 1.08415 1.19548 0.83614 0.94262 0.95383 1.83519 1.13829 1.43790 1.73880 1.20708 0.89830 0.95371 1.41701 0.89957 1.25267 0.95039 1.02532 0.95927 1.69722 1.06067 1.35636 1.44790 0.85232 0.77715 0.78314 0.79559 1.19141 1.19221 1.18662 1.20263 0.91749 0.98735 1.07974 1.23180 0.88500 0.98687 1.07124 0.86717 0.89894 0.87322 0.91114 0.88419 0.88712 0.75304 0.89743 0.90387 0.83911 0.83854 0.87007 0.90533 0.85569 0.86062 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.49 71.24 0.75 0.14 16 2 C 0.10 1.56 7.45 46.90 0.35 1.91 16 3 N -0.34 -7.76 12.45 -40.62 -0.51 -8.27 16 4 O -0.21 -5.12 11.62 -38.29 -0.45 -5.57 16 5 C 0.05 0.89 1.22 -10.93 -0.01 0.88 16 6 C -0.14 -1.98 8.96 71.98 0.64 -1.34 16 7 C 0.51 12.62 6.83 87.66 0.60 13.22 16 8 O -0.56 -16.34 15.71 -3.04 -0.05 -16.39 16 9 N -0.70 -17.64 5.49 -466.77 -2.56 -20.20 16 10 C 0.17 4.48 5.80 85.63 0.50 4.98 16 11 C -0.06 -1.95 5.25 -19.88 -0.10 -2.06 16 12 C -0.16 -4.75 9.70 22.30 0.22 -4.53 16 13 C -0.07 -2.45 10.04 22.25 0.22 -2.22 16 14 C -0.23 -9.70 9.17 22.39 0.21 -9.49 16 15 C 0.12 5.53 6.65 22.58 0.15 5.68 16 16 O -0.24 -12.98 8.59 -22.81 -0.20 -13.18 16 17 C -0.40 -23.31 9.95 67.92 0.68 -22.63 16 18 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 19 C 0.01 0.63 5.49 84.83 0.47 1.10 16 20 N -0.92 -54.75 13.96 21.61 0.30 -54.45 16 21 Si 0.97 45.12 28.62 68.60 1.96 47.08 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 25 C -0.17 -6.25 9.65 22.39 0.22 -6.04 16 26 C -0.14 -1.89 6.12 30.77 0.19 -1.70 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.41 10.23 8.21 -92.71 -0.76 9.47 16 34 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 35 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.11 5.26 5.64 -2.91 -0.02 5.24 16 39 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.12 1.73 6.94 -2.39 -0.02 1.72 16 42 H 0.14 1.10 7.91 -2.39 -0.02 1.08 16 Total: -1.00 -73.03 362.14 3.86 -69.17 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.30 Total: 23.92 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.06 Total: -22.12 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -2.77 Total: -82.92 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.69 Total: -35.13 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.96 Total: 47.08 kcal Total: -73.03 3.86 -69.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646493433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.214 kcal (2) G-P(sol) polarization free energy of solvation -73.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds