Wall clock time and date at job start Tue Mar 31 2020 13:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27643 * 125.77297 * 2 1 4 4 O 1.41379 * 113.17095 * 179.69777 * 3 2 1 5 5 C 1.44249 * 107.51024 * 17.36918 * 4 3 2 6 6 C 1.53000 * 111.04465 * 92.97019 * 5 4 3 7 7 C 1.50703 * 111.01022 * 216.82724 * 5 4 3 8 8 O 1.21287 * 119.99462 * 137.15984 * 7 5 4 9 9 N 1.34773 * 119.99990 * 317.15718 * 7 5 4 10 10 C 1.46498 * 119.99735 * 180.02562 * 9 7 5 11 11 C 1.50696 * 109.47199 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96997 * 89.99296 * 11 10 9 13 13 C 1.38275 * 120.13835 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.06977 * 0.28020 * 13 12 11 15 15 C 1.38853 * 119.93133 * 359.45069 * 14 13 12 16 16 O 1.35749 * 120.07112 * 180.27775 * 15 14 13 17 17 C 1.34833 * 116.99801 * 354.75701 * 16 15 14 18 18 H 1.07999 * 120.00283 * 5.08278 * 17 16 15 19 19 C 1.38658 * 119.99720 * 185.08053 * 17 16 15 20 20 N 1.31553 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46855 * 90.00122 * 21 19 17 23 23 H 1.48494 * 109.47218 * 210.00112 * 21 19 17 24 24 H 1.48498 * 109.46997 * 330.00116 * 21 19 17 25 25 C 1.38080 * 119.96268 * 269.97590 * 11 10 9 26 26 C 1.51687 * 125.76320 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47041 * 269.98152 * 1 2 3 28 28 H 1.09001 * 109.46680 * 29.97432 * 1 2 3 29 29 H 1.08992 * 109.47324 * 149.97821 * 1 2 3 30 30 H 1.08997 * 109.46881 * 184.62457 * 6 5 4 31 31 H 1.08999 * 109.46869 * 304.62673 * 6 5 4 32 32 H 1.09003 * 109.46912 * 64.62245 * 6 5 4 33 33 H 0.96994 * 119.99972 * 0.02562 * 9 7 5 34 34 H 1.09001 * 109.47515 * 59.99656 * 10 9 7 35 35 H 1.09005 * 109.47018 * 299.99909 * 10 9 7 36 36 H 1.08001 * 119.92799 * 359.96224 * 12 11 10 37 37 H 1.08000 * 119.96093 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.03245 * 179.70156 * 14 13 12 39 39 H 0.96999 * 119.99776 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.03814 * 359.97438 * 25 11 10 41 41 H 1.08997 * 110.80803 * 46.45734 * 26 2 1 42 42 H 1.09001 * 110.97449 * 283.02240 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2532 1.0356 0.0000 4 8 3.6329 0.7272 0.0069 5 6 3.7718 -0.6501 -0.3990 6 6 3.9968 -0.7580 -1.9085 7 6 4.8836 -1.3276 0.3600 8 8 4.7274 -2.4508 0.7901 9 7 6.0513 -0.6853 0.5608 10 6 7.1322 -1.3441 1.2981 11 6 8.3189 -0.4192 1.3831 12 6 8.4380 0.4560 2.4477 13 6 9.5257 1.3058 2.5294 14 6 10.4939 1.2874 1.5446 15 6 10.3801 0.4063 0.4775 16 8 11.3329 0.3818 -0.4891 17 6 12.3065 1.3114 -0.4125 18 1 12.3509 1.9783 0.4358 19 6 13.2508 1.4112 -1.4229 20 7 13.1965 0.5992 -2.4565 21 14 14.5993 2.6996 -1.3171 22 1 15.7757 2.1282 -0.6137 23 1 14.9952 3.1153 -2.6866 24 1 14.0988 3.8794 -0.5669 25 6 9.2863 -0.4463 0.3982 26 6 2.3935 -1.2308 -0.0006 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 4.0161 -1.8085 -2.1987 31 1 3.1876 -0.2507 -2.4336 32 1 4.9472 -0.2917 -2.1684 33 1 6.1760 0.2131 0.2171 34 1 7.4204 -2.2589 0.7802 35 1 6.7898 -1.5885 2.3037 36 1 7.6798 0.4755 3.2166 37 1 9.6161 1.9877 3.3621 38 1 11.3407 1.9548 1.6065 39 1 13.8569 0.6692 -3.1635 40 1 9.1931 -1.1302 -0.4324 41 1 2.0503 -1.9549 -0.7394 42 1 2.4355 -1.6819 0.9909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646493434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:47 Heat of formation + Delta-G solvation = -20.696515 kcal Electronic energy + Delta-G solvation = -25654.305278 eV Core-core repulsion = 21795.229084 eV Total energy + Delta-G solvation = -3859.076194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17406 -39.40837 -38.85125 -36.83552 -34.78167 -34.25234 -32.70163 -32.33957 -30.77016 -29.16298 -28.82158 -27.71042 -26.29936 -25.24243 -23.30061 -21.72148 -20.85164 -20.70552 -19.87904 -18.14639 -17.51455 -16.97946 -16.27122 -16.10377 -15.86476 -15.34020 -14.97391 -14.78984 -14.41192 -14.34983 -14.21714 -13.89963 -13.69779 -13.49331 -13.24347 -13.08608 -12.70118 -12.61451 -12.52738 -12.47238 -12.42488 -12.16590 -11.73760 -11.66838 -11.41560 -11.06655 -10.93588 -10.83101 -10.70723 -10.48338 -10.19501 -9.66774 -9.41850 -9.10850 -8.89955 -8.26081 -7.33841 -6.49955 -4.09395 1.45711 1.86570 2.26092 2.27555 2.71198 3.06837 3.10538 3.13126 3.15987 3.79003 3.92218 4.03425 4.07589 4.40531 4.47904 4.63638 4.90202 4.95187 4.99388 5.05777 5.06398 5.16198 5.22505 5.25384 5.31277 5.44978 5.51284 5.69168 5.70152 5.73684 5.80632 5.86863 6.06364 6.23638 6.33558 6.53856 6.80208 6.98300 7.02663 7.16417 7.26390 7.34169 7.42482 7.69976 7.94227 8.00613 8.95502 9.63869 10.67817 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.002487 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.896947 B =11254.167651 C =11572.073492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.084 3.916 3 N -0.287 5.287 4 O -0.186 6.186 5 C 0.050 3.950 6 C -0.156 4.156 7 C 0.533 3.467 8 O -0.536 6.536 9 N -0.702 5.702 10 C 0.166 3.834 11 C -0.075 4.075 12 C -0.193 4.193 13 C -0.075 4.075 14 C -0.224 4.224 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.170 4.170 26 C -0.131 4.131 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.271 0.729 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.624 -2.054 3.932 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 N -0.030 5.030 4 O -0.204 6.204 5 C 0.006 3.994 6 C -0.214 4.214 7 C 0.316 3.684 8 O -0.413 6.413 9 N -0.353 5.353 10 C 0.044 3.956 11 C -0.076 4.076 12 C -0.212 4.212 13 C -0.094 4.094 14 C -0.244 4.244 15 C 0.096 3.904 16 O -0.079 6.079 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.190 4.190 26 C -0.171 4.171 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.246 0.754 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.290 -1.840 3.874 21.718 hybrid contribution 0.998 0.242 -0.111 1.033 sum -20.292 -1.598 3.763 20.700 Atomic orbital electron populations 1.20442 0.85047 1.04562 1.04344 1.26355 0.98292 0.92241 0.94029 1.77942 0.88756 1.22881 1.13439 1.91340 1.16306 1.25455 1.87264 1.23177 0.95117 0.84217 0.96868 1.22111 1.04312 1.03856 0.91086 1.19757 0.82985 0.86099 0.79592 1.90731 1.81552 1.18614 1.50445 1.46126 1.13470 1.19839 1.55823 1.20242 0.84147 0.94504 0.96734 1.19222 0.95006 0.97749 0.95586 1.20483 1.00168 1.00690 0.99894 1.20748 0.93704 0.97494 0.97424 1.21249 1.02216 1.04158 0.96752 1.19313 0.88922 0.93127 0.89009 1.83981 1.31561 1.49941 1.42449 1.21328 1.04968 1.12741 1.07889 0.89021 1.25298 0.98437 0.98210 0.94523 1.70034 1.34925 1.35916 1.08710 0.85706 0.79934 0.79659 0.78114 1.19840 1.20211 1.19163 1.20071 0.94465 1.03568 1.00894 1.22972 0.89824 0.98116 1.06151 0.89092 0.89633 0.89374 0.90058 0.90852 0.90172 0.75408 0.90520 0.90708 0.87483 0.87217 0.85411 0.91950 0.86389 0.87214 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 10.49 36.01 0.38 0.01 16 2 C 0.08 0.72 7.45 -78.57 -0.59 0.14 16 3 N -0.29 -3.47 12.45 35.65 0.44 -3.03 16 4 O -0.19 -2.51 11.62 -11.36 -0.13 -2.65 16 5 C 0.05 0.58 1.22 -90.84 -0.11 0.47 16 6 C -0.16 -1.52 8.96 37.16 0.33 -1.19 16 7 C 0.53 7.38 6.77 -10.99 -0.07 7.31 16 8 O -0.54 -8.60 16.03 5.55 0.09 -8.51 16 9 N -0.70 -9.84 5.49 -61.47 -0.34 -10.18 16 10 C 0.17 2.46 5.80 -5.20 -0.03 2.43 16 11 C -0.07 -1.29 5.25 -104.65 -0.55 -1.83 16 12 C -0.19 -3.24 9.70 -39.53 -0.38 -3.62 16 13 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 14 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 15 C 0.15 3.52 6.65 -39.11 -0.26 3.26 16 16 O -0.18 -4.92 9.76 0.04 0.00 -4.92 16 17 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 21 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 26 C -0.13 -1.18 5.84 -26.46 -0.15 -1.34 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.41 5.64 8.20 -40.82 -0.33 5.31 16 34 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 41 H 0.11 0.73 7.91 -51.93 -0.41 0.32 16 42 H 0.11 1.10 7.47 -51.93 -0.39 0.71 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -32.86 363.78 -6.58 -39.44 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.48 Total: 7.87 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -2.38 Total: -14.56 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.87 Total: -37.40 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.04 Total: -16.07 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.86 -6.58 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646493434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.741 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds