Wall clock time and date at job start Tue Mar 31 2020 13:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27643 * 125.77297 * 2 1 4 4 O 1.41379 * 113.17095 * 179.69777 * 3 2 1 5 5 C 1.44249 * 107.51024 * 17.36918 * 4 3 2 6 6 C 1.53000 * 111.04465 * 92.97019 * 5 4 3 7 7 C 1.50703 * 111.01022 * 216.82724 * 5 4 3 8 8 O 1.21287 * 119.99462 * 137.15984 * 7 5 4 9 9 N 1.34773 * 119.99990 * 317.15718 * 7 5 4 10 10 C 1.46498 * 119.99735 * 180.02562 * 9 7 5 11 11 C 1.50696 * 109.47199 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96997 * 89.99296 * 11 10 9 13 13 C 1.38275 * 120.13835 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.06977 * 0.28020 * 13 12 11 15 15 C 1.38853 * 119.93133 * 359.45069 * 14 13 12 16 16 O 1.35749 * 120.07112 * 180.27775 * 15 14 13 17 17 C 1.34833 * 116.99801 * 354.75701 * 16 15 14 18 18 H 1.07999 * 120.00283 * 5.08278 * 17 16 15 19 19 C 1.38658 * 119.99720 * 185.08053 * 17 16 15 20 20 N 1.31553 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46855 * 90.00122 * 21 19 17 23 23 H 1.48494 * 109.47218 * 210.00112 * 21 19 17 24 24 H 1.48498 * 109.46997 * 330.00116 * 21 19 17 25 25 C 1.38080 * 119.96268 * 269.97590 * 11 10 9 26 26 C 1.51687 * 125.76320 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47041 * 269.98152 * 1 2 3 28 28 H 1.09001 * 109.46680 * 29.97432 * 1 2 3 29 29 H 1.08992 * 109.47324 * 149.97821 * 1 2 3 30 30 H 1.08997 * 109.46881 * 184.62457 * 6 5 4 31 31 H 1.08999 * 109.46869 * 304.62673 * 6 5 4 32 32 H 1.09003 * 109.46912 * 64.62245 * 6 5 4 33 33 H 0.96994 * 119.99972 * 0.02562 * 9 7 5 34 34 H 1.09001 * 109.47515 * 59.99656 * 10 9 7 35 35 H 1.09005 * 109.47018 * 299.99909 * 10 9 7 36 36 H 1.08001 * 119.92799 * 359.96224 * 12 11 10 37 37 H 1.08000 * 119.96093 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.03245 * 179.70156 * 14 13 12 39 39 H 0.96999 * 119.99776 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.03814 * 359.97438 * 25 11 10 41 41 H 1.08997 * 110.80803 * 46.45734 * 26 2 1 42 42 H 1.09001 * 110.97449 * 283.02240 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2532 1.0356 0.0000 4 8 3.6329 0.7272 0.0069 5 6 3.7718 -0.6501 -0.3990 6 6 3.9968 -0.7580 -1.9085 7 6 4.8836 -1.3276 0.3600 8 8 4.7274 -2.4508 0.7901 9 7 6.0513 -0.6853 0.5608 10 6 7.1322 -1.3441 1.2981 11 6 8.3189 -0.4192 1.3831 12 6 8.4380 0.4560 2.4477 13 6 9.5257 1.3058 2.5294 14 6 10.4939 1.2874 1.5446 15 6 10.3801 0.4063 0.4775 16 8 11.3329 0.3818 -0.4891 17 6 12.3065 1.3114 -0.4125 18 1 12.3509 1.9783 0.4358 19 6 13.2508 1.4112 -1.4229 20 7 13.1965 0.5992 -2.4565 21 14 14.5993 2.6996 -1.3171 22 1 15.7757 2.1282 -0.6137 23 1 14.9952 3.1153 -2.6866 24 1 14.0988 3.8794 -0.5669 25 6 9.2863 -0.4463 0.3982 26 6 2.3935 -1.2308 -0.0006 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 4.0161 -1.8085 -2.1987 31 1 3.1876 -0.2507 -2.4336 32 1 4.9472 -0.2917 -2.1684 33 1 6.1760 0.2131 0.2171 34 1 7.4204 -2.2589 0.7802 35 1 6.7898 -1.5885 2.3037 36 1 7.6798 0.4755 3.2166 37 1 9.6161 1.9877 3.3621 38 1 11.3407 1.9548 1.6065 39 1 13.8569 0.6692 -3.1635 40 1 9.1931 -1.1302 -0.4324 41 1 2.0503 -1.9549 -0.7394 42 1 2.4355 -1.6819 0.9909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646493434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:47 Heat of formation + Delta-G solvation = -43.305389 kcal Electronic energy + Delta-G solvation = -25655.285672 eV Core-core repulsion = 21795.229084 eV Total energy + Delta-G solvation = -3860.056588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07388 -40.91511 -40.09293 -38.49360 -35.99246 -35.07973 -34.30234 -33.55305 -32.19280 -30.79959 -29.34205 -28.44882 -27.76819 -27.05014 -24.36696 -23.29315 -22.44117 -21.59593 -20.78848 -19.65392 -19.01806 -18.46489 -17.24037 -17.16629 -16.81650 -16.72001 -16.47438 -16.15326 -15.94865 -15.55785 -15.39430 -15.08440 -14.99676 -14.50020 -14.39018 -14.01748 -13.91024 -13.65551 -13.59152 -13.43498 -13.34308 -13.21408 -13.10582 -13.05720 -12.61491 -12.46599 -12.37727 -12.30616 -12.12929 -11.76961 -11.27312 -11.17847 -10.82693 -10.53046 -10.28880 -9.79850 -9.06742 -8.48639 -6.17195 0.33096 0.66916 0.78475 1.20792 1.34842 1.43549 1.52145 1.83338 2.06051 2.16584 2.80463 3.06318 3.15536 3.27043 3.34053 3.37088 3.56347 3.69196 3.78459 4.05158 4.26231 4.35246 4.37260 4.42192 4.48030 4.52157 4.60033 4.62561 4.69031 4.70191 4.76750 4.84877 4.96194 4.97055 5.09537 5.16884 5.22147 5.28616 5.58070 5.66437 5.67812 5.99599 6.11739 6.20975 6.36561 6.88385 6.96105 7.75492 8.74393 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.002487 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.896947 B =11254.167651 C =11572.073492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.107 3.893 3 N -0.328 5.328 4 O -0.217 6.217 5 C 0.047 3.953 6 C -0.153 4.153 7 C 0.533 3.467 8 O -0.559 6.559 9 N -0.703 5.703 10 C 0.172 3.828 11 C -0.062 4.062 12 C -0.170 4.170 13 C -0.070 4.070 14 C -0.233 4.233 15 C 0.113 3.887 16 O -0.230 6.230 17 C -0.413 4.413 18 H 0.103 0.897 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.179 4.179 26 C -0.131 4.131 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.411 0.589 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.273 0.727 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.284 -1.531 5.848 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 N -0.074 5.074 4 O -0.233 6.233 5 C 0.003 3.997 6 C -0.210 4.210 7 C 0.317 3.683 8 O -0.438 6.438 9 N -0.353 5.353 10 C 0.049 3.951 11 C -0.062 4.062 12 C -0.189 4.189 13 C -0.088 4.088 14 C -0.253 4.253 15 C 0.062 3.938 16 O -0.137 6.137 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.176 1.176 25 C -0.199 4.199 26 C -0.170 4.170 27 H 0.125 0.875 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.156 0.844 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.982 -1.317 5.835 24.717 hybrid contribution 1.467 -0.031 -0.490 1.547 sum -22.515 -1.348 5.345 23.180 Atomic orbital electron populations 1.20713 0.81768 1.06204 1.05765 1.27037 0.99892 0.91074 0.90499 1.77976 0.88093 1.24261 1.17108 1.91301 1.17969 1.26152 1.87857 1.23233 0.95364 0.83936 0.97164 1.22112 1.04140 1.04633 0.90162 1.20172 0.83199 0.85805 0.79112 1.90714 1.82021 1.19595 1.51426 1.46092 1.13487 1.19874 1.55850 1.20165 0.83491 0.93721 0.97724 1.19428 0.94644 0.97633 0.94530 1.20991 0.99941 0.98398 0.99595 1.21155 0.92542 0.97810 0.97260 1.21380 1.03151 1.03681 0.97069 1.19848 0.89443 0.95032 0.89460 1.83948 1.33293 1.51551 1.44903 1.21827 1.05402 1.13129 1.08591 0.87943 1.26586 1.00997 1.00568 0.93873 1.70181 1.36744 1.38752 1.10141 0.84592 0.76388 0.76842 0.78442 1.18809 1.19682 1.17593 1.20220 0.94656 1.03218 1.01834 1.23053 0.88525 0.98754 1.06685 0.87547 0.89183 0.86536 0.88888 0.89687 0.91400 0.75294 0.90839 0.89154 0.83736 0.83371 0.86035 0.91836 0.87153 0.84407 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.49 71.24 0.75 0.31 16 2 C 0.11 1.59 7.45 46.90 0.35 1.94 16 3 N -0.33 -7.53 12.45 -40.61 -0.51 -8.03 16 4 O -0.22 -5.76 11.62 -38.29 -0.45 -6.20 16 5 C 0.05 1.02 1.22 -10.93 -0.01 1.01 16 6 C -0.15 -2.83 8.96 71.98 0.64 -2.18 16 7 C 0.53 14.21 6.77 87.66 0.59 14.80 16 8 O -0.56 -17.20 16.03 -3.05 -0.05 -17.25 16 9 N -0.70 -19.01 5.49 -466.79 -2.56 -21.57 16 10 C 0.17 4.82 5.80 85.63 0.50 5.32 16 11 C -0.06 -2.03 5.25 -19.88 -0.10 -2.14 16 12 C -0.17 -5.15 9.70 22.30 0.22 -4.93 16 13 C -0.07 -2.29 10.04 22.25 0.22 -2.07 16 14 C -0.23 -9.86 9.17 22.39 0.21 -9.65 16 15 C 0.11 5.49 6.65 22.58 0.15 5.64 16 16 O -0.23 -13.71 9.76 -22.76 -0.22 -13.93 16 17 C -0.41 -23.82 9.49 67.92 0.64 -23.18 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 20 N -0.92 -56.30 13.67 21.61 0.30 -56.00 16 21 Si 1.02 42.57 29.55 68.60 2.03 44.59 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 25 C -0.18 -7.48 9.65 22.39 0.22 -7.26 16 26 C -0.13 -2.06 5.84 30.77 0.18 -1.88 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.41 11.10 8.20 -92.71 -0.76 10.34 16 34 H 0.07 2.14 8.08 -2.39 -0.02 2.12 16 35 H 0.09 2.31 8.08 -2.38 -0.02 2.29 16 36 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 38 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 39 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.14 1.37 7.91 -2.39 -0.02 1.35 16 42 H 0.11 1.87 7.47 -2.39 -0.02 1.86 16 Total: -1.00 -76.76 363.78 3.85 -72.91 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.30 Total: 30.58 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 5.02 Total: -25.09 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -2.77 Total: -85.61 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.72 Total: -37.38 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -76.76 3.85 -72.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646493434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.600 kcal (2) G-P(sol) polarization free energy of solvation -76.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds