Wall clock time and date at job start Tue Mar 31 2020 13:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39876 * 125.89934 * 2 1 4 4 C 1.35317 * 107.91830 * 180.02562 * 3 2 1 5 5 N 1.34946 * 107.74907 * 359.97438 * 4 3 2 6 6 C 1.46498 * 126.03836 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47218 * 125.00396 * 6 5 4 8 8 H 1.09004 * 109.47330 * 55.00019 * 7 6 5 9 9 C 1.53002 * 109.47303 * 295.00430 * 7 6 5 10 10 C 1.50700 * 109.47257 * 174.99996 * 7 6 5 11 11 O 1.20822 * 119.99958 * 359.97438 * 10 7 6 12 12 O 1.34234 * 120.00068 * 180.02562 * 10 7 6 13 13 C 1.45196 * 116.99938 * 179.97438 * 12 10 7 14 14 H 1.09004 * 109.47117 * 30.00246 * 13 12 10 15 15 C 1.50707 * 109.46838 * 149.99799 * 13 12 10 16 16 H 1.07998 * 120.00336 * 0.02562 * 15 13 12 17 17 C 1.37884 * 119.99623 * 180.02562 * 15 13 12 18 18 N 1.31518 * 120.00031 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99709 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47281 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47068 * 119.99869 * 19 17 15 22 22 H 1.48501 * 109.47168 * 240.00029 * 19 17 15 23 23 C 1.50696 * 109.47332 * 269.99939 * 13 12 10 24 24 C 1.34512 * 125.79194 * 145.00142 * 23 13 12 25 25 C 1.41383 * 106.84341 * 180.02562 * 24 23 13 26 26 C 1.34512 * 106.83867 * 359.97438 * 25 24 23 27 27 O 1.34305 * 125.78791 * 324.69208 * 23 13 12 28 28 N 1.30839 * 125.90063 * 180.30612 * 2 1 3 29 29 H 1.09002 * 109.46716 * 89.99852 * 1 2 3 30 30 H 1.09001 * 109.46697 * 209.99938 * 1 2 3 31 31 H 1.09004 * 109.46711 * 330.00049 * 1 2 3 32 32 H 1.07993 * 126.03437 * 0.02562 * 3 2 1 33 33 H 1.07997 * 126.12594 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47120 * 5.00462 * 6 5 4 35 35 H 1.09006 * 109.47366 * 245.00512 * 6 5 4 36 36 H 1.08996 * 109.46948 * 59.99698 * 9 7 6 37 37 H 1.08996 * 109.46989 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.46768 * 299.99531 * 9 7 6 39 39 H 0.96998 * 119.99390 * 180.02562 * 18 17 15 40 40 H 1.08004 * 126.58018 * 0.03241 * 24 23 13 41 41 H 1.07994 * 126.57902 * 179.97438 * 25 24 23 42 42 H 1.08005 * 125.78634 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6143 0.7153 -0.0006 5 7 3.6088 -0.6341 -0.0004 6 6 4.7900 -1.5008 -0.0013 7 6 4.7128 -2.4694 1.1804 8 1 3.7714 -3.0176 1.1401 9 6 4.7889 -1.6828 2.4905 10 6 5.8630 -3.4406 1.1099 11 8 6.6621 -3.3659 0.2069 12 8 5.9990 -4.3892 2.0499 13 6 7.1300 -5.2902 1.9182 14 1 7.9525 -4.7713 1.4259 15 6 7.5704 -5.7465 3.2853 16 1 7.0519 -5.3949 4.1651 17 6 8.6354 -6.6130 3.4129 18 7 9.2664 -7.0415 2.3416 19 14 9.1809 -7.1792 5.1074 20 1 8.3124 -6.5588 6.1399 21 1 9.0729 -8.6578 5.1937 22 1 10.5905 -6.7716 5.3355 23 6 6.7262 -6.4863 1.0952 24 6 7.5157 -7.1496 0.2315 25 6 6.7364 -8.1943 -0.3165 26 6 5.5174 -8.1071 0.2455 27 8 5.5188 -7.0743 1.1041 28 7 2.2743 -1.0598 -0.0057 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9923 2.1597 0.0004 33 1 4.4892 1.3485 -0.0011 34 1 5.6886 -0.8904 0.0874 35 1 4.8252 -2.0660 -0.9327 36 1 3.9570 -0.9804 2.5414 37 1 4.7344 -2.3729 3.3324 38 1 5.7303 -1.1347 2.5309 39 1 10.0154 -7.6514 2.4314 40 1 8.5471 -6.9271 0.0010 41 1 7.0581 -8.9224 -1.0463 42 1 4.6809 -8.7599 0.0440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646914981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:06 Heat of formation + Delta-G solvation = 2.325781 kcal Electronic energy + Delta-G solvation = -26455.691765 eV Core-core repulsion = 22597.613893 eV Total energy + Delta-G solvation = -3858.077872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38399 -41.28495 -39.80048 -36.27191 -35.12408 -33.37733 -32.48802 -31.70984 -30.08966 -29.64949 -28.83403 -26.72749 -25.91425 -24.05221 -22.57807 -21.20787 -20.67607 -20.20986 -19.55038 -19.13460 -17.56254 -16.95986 -16.70675 -16.15974 -15.78383 -15.60000 -15.04762 -14.74851 -14.47777 -14.27483 -14.10512 -13.63339 -13.18374 -13.12346 -13.00384 -12.74089 -12.60843 -12.18259 -12.13074 -12.00261 -11.76977 -11.60746 -11.40136 -11.29654 -11.23598 -11.12617 -10.99962 -10.55317 -10.40958 -10.18912 -9.76497 -9.46583 -9.28341 -8.86707 -8.67231 -8.61098 -7.27594 -6.25538 -4.44916 1.83640 2.35446 2.71784 2.76028 2.85610 3.17308 3.23851 3.27976 3.46382 3.92215 4.15951 4.22325 4.36849 4.66079 4.70137 4.80736 5.01490 5.09537 5.12067 5.33076 5.47080 5.47625 5.53784 5.57003 5.71300 5.75098 5.77422 5.84187 5.94686 6.02868 6.05343 6.21011 6.35348 6.61336 6.65052 6.94324 6.96640 7.12798 7.21552 7.32648 7.64440 7.69086 7.69668 7.79493 8.29149 8.43236 8.71720 9.22292 10.71764 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.003246 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.644435 B = 8623.211660 C = 9386.387603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.065 3.935 3 C -0.277 4.277 4 C 0.058 3.942 5 N -0.365 5.365 6 C 0.150 3.850 7 C -0.097 4.097 8 H 0.118 0.882 9 C -0.141 4.141 10 C 0.465 3.535 11 O -0.518 6.518 12 O -0.342 6.342 13 C 0.299 3.701 14 H 0.079 0.921 15 C -0.530 4.530 16 H 0.079 0.921 17 C 0.069 3.931 18 N -0.867 5.867 19 Si 0.914 3.086 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.279 1.279 23 C 0.018 3.982 24 C -0.174 4.174 25 C -0.219 4.219 26 C -0.088 4.088 27 O -0.179 6.179 28 N -0.291 5.291 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.173 0.827 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.268 0.732 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 12.345 -4.048 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.306 4.306 4 C -0.088 4.088 5 N -0.146 5.146 6 C 0.029 3.971 7 C -0.117 4.117 8 H 0.136 0.864 9 C -0.198 4.198 10 C 0.307 3.693 11 O -0.408 6.408 12 O -0.257 6.257 13 C 0.246 3.754 14 H 0.096 0.904 15 C -0.567 4.567 16 H 0.097 0.903 17 C -0.137 4.137 18 N -0.502 5.502 19 Si 0.741 3.259 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.033 4.033 24 C -0.193 4.193 25 C -0.239 4.239 26 C -0.155 4.155 27 O -0.075 6.075 28 N -0.115 5.115 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.190 0.810 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.542 10.934 -4.181 15.753 hybrid contribution 0.783 0.002 0.510 0.934 sum -9.759 10.936 -3.672 15.110 Atomic orbital electron populations 1.20150 0.86902 1.03160 1.02749 1.22364 0.96917 0.90875 0.99962 1.21342 0.91632 0.99646 1.18016 1.22574 0.99733 0.84923 1.01558 1.48607 1.05286 1.04627 1.56114 1.21578 0.83547 0.92512 0.99489 1.21169 0.98305 0.95067 0.97151 0.86383 1.21724 1.02259 1.00260 0.95547 1.23065 0.85220 0.80835 0.80154 1.90628 1.43529 1.72106 1.34497 1.86544 1.50781 1.40415 1.47990 1.19225 0.81219 0.79082 0.95884 0.90389 1.20935 1.15359 1.30165 0.90229 0.90336 1.24949 0.95545 0.95027 0.98161 1.70037 1.20593 1.31350 1.28183 0.86169 0.78511 0.78552 0.82689 1.19259 1.20641 1.20519 1.23555 0.82288 0.99760 0.97700 1.21290 1.00578 0.97653 0.99792 1.21722 0.94638 1.02553 1.04970 1.23616 1.00004 0.94636 0.97287 1.83992 1.34614 1.37059 1.51848 1.77338 0.86484 1.22861 1.24771 0.90765 0.90963 0.90630 0.83769 0.81013 0.87561 0.88547 0.91775 0.90253 0.92000 0.92162 0.83646 0.85130 0.79878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 36.01 0.38 -0.21 16 2 C 0.07 0.76 7.22 -82.40 -0.59 0.17 16 3 C -0.28 -2.84 10.74 -40.01 -0.43 -3.27 16 4 C 0.06 0.60 11.45 -17.22 -0.20 0.41 16 5 N -0.37 -4.65 3.13 -61.37 -0.19 -4.84 16 6 C 0.15 1.96 5.25 -4.05 -0.02 1.94 16 7 C -0.10 -1.46 2.91 -91.77 -0.27 -1.73 16 8 H 0.12 1.85 8.06 -51.93 -0.42 1.43 16 9 C -0.14 -1.87 9.01 37.16 0.33 -1.53 16 10 C 0.47 9.25 7.22 36.01 0.26 9.51 16 11 O -0.52 -11.30 15.14 -18.75 -0.28 -11.59 16 12 O -0.34 -7.92 9.74 -42.02 -0.41 -8.33 16 13 C 0.30 7.79 2.41 -29.03 -0.07 7.72 16 14 H 0.08 2.16 7.16 -51.93 -0.37 1.79 16 15 C -0.53 -14.41 8.89 -34.43 -0.31 -14.71 16 16 H 0.08 2.10 7.81 -52.49 -0.41 1.69 16 17 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 18 N -0.87 -23.57 10.48 55.43 0.58 -22.99 16 19 Si 0.91 20.66 29.54 -169.99 -5.02 15.63 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.02 0.46 5.67 -35.63 -0.20 0.26 16 24 C -0.17 -4.32 9.04 -39.70 -0.36 -4.68 16 25 C -0.22 -4.72 10.91 -39.70 -0.43 -5.15 16 26 C -0.09 -1.83 12.09 29.41 0.36 -1.47 16 27 O -0.18 -4.40 10.64 2.18 0.02 -4.38 16 28 N -0.29 -4.13 12.35 33.67 0.42 -3.72 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.11 1.19 8.07 -51.93 -0.42 0.78 16 35 H 0.10 1.34 7.96 -51.93 -0.41 0.93 16 36 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 37 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.15 3.72 7.49 -52.48 -0.39 3.32 16 41 H 0.13 2.38 8.06 -52.49 -0.42 1.95 16 42 H 0.18 2.90 8.06 -52.48 -0.42 2.47 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -32.03 366.40 -6.78 -38.81 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.77 Total: 6.88 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.65 Total: -11.01 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.80 Total: -31.55 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.67 Total: -24.29 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.03 -6.78 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.138 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds