Wall clock time and date at job start Tue Mar 31 2020 13:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39876 * 125.89934 * 2 1 4 4 C 1.35317 * 107.91830 * 180.02562 * 3 2 1 5 5 N 1.34946 * 107.74907 * 359.97438 * 4 3 2 6 6 C 1.46498 * 126.03836 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47218 * 125.00396 * 6 5 4 8 8 H 1.09004 * 109.47330 * 55.00019 * 7 6 5 9 9 C 1.53002 * 109.47303 * 295.00430 * 7 6 5 10 10 C 1.50700 * 109.47257 * 174.99996 * 7 6 5 11 11 O 1.20822 * 119.99958 * 359.97438 * 10 7 6 12 12 O 1.34234 * 120.00068 * 180.02562 * 10 7 6 13 13 C 1.45196 * 116.99938 * 179.97438 * 12 10 7 14 14 H 1.09004 * 109.47117 * 30.00246 * 13 12 10 15 15 C 1.50707 * 109.46838 * 149.99799 * 13 12 10 16 16 H 1.07998 * 120.00336 * 0.02562 * 15 13 12 17 17 C 1.37884 * 119.99623 * 180.02562 * 15 13 12 18 18 N 1.31518 * 120.00031 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99709 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47281 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47068 * 119.99869 * 19 17 15 22 22 H 1.48501 * 109.47168 * 240.00029 * 19 17 15 23 23 C 1.50696 * 109.47332 * 269.99939 * 13 12 10 24 24 C 1.34512 * 125.79194 * 145.00142 * 23 13 12 25 25 C 1.41383 * 106.84341 * 180.02562 * 24 23 13 26 26 C 1.34512 * 106.83867 * 359.97438 * 25 24 23 27 27 O 1.34305 * 125.78791 * 324.69208 * 23 13 12 28 28 N 1.30839 * 125.90063 * 180.30612 * 2 1 3 29 29 H 1.09002 * 109.46716 * 89.99852 * 1 2 3 30 30 H 1.09001 * 109.46697 * 209.99938 * 1 2 3 31 31 H 1.09004 * 109.46711 * 330.00049 * 1 2 3 32 32 H 1.07993 * 126.03437 * 0.02562 * 3 2 1 33 33 H 1.07997 * 126.12594 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47120 * 5.00462 * 6 5 4 35 35 H 1.09006 * 109.47366 * 245.00512 * 6 5 4 36 36 H 1.08996 * 109.46948 * 59.99698 * 9 7 6 37 37 H 1.08996 * 109.46989 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.46768 * 299.99531 * 9 7 6 39 39 H 0.96998 * 119.99390 * 180.02562 * 18 17 15 40 40 H 1.08004 * 126.58018 * 0.03241 * 24 23 13 41 41 H 1.07994 * 126.57902 * 179.97438 * 25 24 23 42 42 H 1.08005 * 125.78634 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6143 0.7153 -0.0006 5 7 3.6088 -0.6341 -0.0004 6 6 4.7900 -1.5008 -0.0013 7 6 4.7128 -2.4694 1.1804 8 1 3.7714 -3.0176 1.1401 9 6 4.7889 -1.6828 2.4905 10 6 5.8630 -3.4406 1.1099 11 8 6.6621 -3.3659 0.2069 12 8 5.9990 -4.3892 2.0499 13 6 7.1300 -5.2902 1.9182 14 1 7.9525 -4.7713 1.4259 15 6 7.5704 -5.7465 3.2853 16 1 7.0519 -5.3949 4.1651 17 6 8.6354 -6.6130 3.4129 18 7 9.2664 -7.0415 2.3416 19 14 9.1809 -7.1792 5.1074 20 1 8.3124 -6.5588 6.1399 21 1 9.0729 -8.6578 5.1937 22 1 10.5905 -6.7716 5.3355 23 6 6.7262 -6.4863 1.0952 24 6 7.5157 -7.1496 0.2315 25 6 6.7364 -8.1943 -0.3165 26 6 5.5174 -8.1071 0.2455 27 8 5.5188 -7.0743 1.1041 28 7 2.2743 -1.0598 -0.0057 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9923 2.1597 0.0004 33 1 4.4892 1.3485 -0.0011 34 1 5.6886 -0.8904 0.0874 35 1 4.8252 -2.0660 -0.9327 36 1 3.9570 -0.9804 2.5414 37 1 4.7344 -2.3729 3.3324 38 1 5.7303 -1.1347 2.5309 39 1 10.0154 -7.6514 2.4314 40 1 8.5471 -6.9271 0.0010 41 1 7.0581 -8.9224 -1.0463 42 1 4.6809 -8.7599 0.0440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646914981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:05 Heat of formation + Delta-G solvation = -15.199549 kcal Electronic energy + Delta-G solvation = -26456.451720 eV Core-core repulsion = 22597.613893 eV Total energy + Delta-G solvation = -3858.837828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.20838 -42.19865 -41.42292 -37.91644 -36.41875 -35.34287 -33.55240 -33.46327 -31.57499 -30.87167 -29.72464 -28.62880 -26.95701 -25.65437 -24.19185 -22.43791 -22.05303 -21.72006 -21.06789 -20.36218 -19.15409 -18.68558 -18.30002 -17.63402 -17.15181 -17.11491 -16.75640 -16.40790 -16.14053 -15.28627 -15.04611 -14.90832 -14.68563 -14.32807 -14.17995 -13.84943 -13.66926 -13.53858 -13.51400 -13.44149 -13.28650 -13.09798 -13.02347 -12.85027 -12.84200 -12.46157 -12.37123 -12.23547 -12.07249 -11.47240 -11.39491 -11.35790 -10.83987 -10.53269 -10.18410 -9.45887 -9.14009 -8.25523 -6.55228 0.96431 1.07300 1.13653 1.34293 1.39670 1.41049 1.53401 1.90448 1.93942 2.09979 2.37054 2.40165 2.98857 3.29044 3.52287 3.71345 3.92254 4.02370 4.03412 4.18458 4.27824 4.38501 4.44123 4.51125 4.55197 4.61962 4.69856 4.78456 4.86322 4.87673 4.97263 5.08876 5.10769 5.13512 5.29204 5.31462 5.38676 5.44880 5.63965 5.78947 5.83234 5.91986 6.12629 6.45959 6.52150 6.81761 6.84366 7.16446 8.70232 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.003246 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.644435 B = 8623.211660 C = 9386.387603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.058 3.942 3 C -0.281 4.281 4 C 0.059 3.941 5 N -0.378 5.378 6 C 0.159 3.841 7 C -0.082 4.082 8 H 0.111 0.889 9 C -0.131 4.131 10 C 0.461 3.539 11 O -0.540 6.540 12 O -0.353 6.353 13 C 0.303 3.697 14 H 0.047 0.953 15 C -0.555 4.555 16 H 0.074 0.926 17 C 0.025 3.975 18 N -0.889 5.889 19 Si 0.980 3.020 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.013 4.013 24 C -0.187 4.187 25 C -0.229 4.229 26 C -0.072 4.072 27 O -0.197 6.197 28 N -0.341 5.341 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.171 0.829 33 H 0.206 0.794 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.271 0.729 40 H 0.128 0.872 41 H 0.166 0.834 42 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.136 13.003 -3.767 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C -0.310 4.310 4 C -0.086 4.086 5 N -0.159 5.159 6 C 0.037 3.963 7 C -0.102 4.102 8 H 0.129 0.871 9 C -0.188 4.188 10 C 0.305 3.695 11 O -0.431 6.431 12 O -0.269 6.269 13 C 0.249 3.751 14 H 0.064 0.936 15 C -0.592 4.592 16 H 0.092 0.908 17 C -0.178 4.178 18 N -0.523 5.523 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.063 4.063 24 C -0.207 4.207 25 C -0.248 4.248 26 C -0.138 4.138 27 O -0.095 6.095 28 N -0.164 5.164 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.189 0.811 33 H 0.223 0.777 34 H 0.144 0.856 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.183 0.817 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -11.776 11.619 -3.913 17.000 hybrid contribution 1.086 -0.165 0.308 1.141 sum -10.690 11.455 -3.605 16.077 Atomic orbital electron populations 1.20278 0.84929 1.04026 1.03651 1.23011 0.98362 0.90951 0.98538 1.21734 0.91360 1.00515 1.17354 1.23225 1.01228 0.84093 1.00051 1.48534 1.04629 1.05376 1.57371 1.21419 0.84840 0.92507 0.97557 1.21170 0.95316 0.94385 0.99371 0.87059 1.21670 1.03423 0.99953 0.93793 1.24020 0.86042 0.80460 0.78985 1.90603 1.44822 1.72544 1.35139 1.86532 1.49879 1.41075 1.49367 1.18813 0.81327 0.79654 0.95316 0.93559 1.21172 1.16286 1.31108 0.90615 0.90805 1.25809 0.95282 0.94785 1.01960 1.70161 1.20728 1.31442 1.30018 0.85170 0.78437 0.77887 0.78176 1.18656 1.20409 1.19429 1.23428 0.83244 1.00605 0.99069 1.21362 1.00084 0.98968 1.00250 1.22076 0.94439 1.02425 1.05828 1.24674 1.01332 0.93076 0.94738 1.83966 1.34072 1.38338 1.53108 1.77303 0.87405 1.24654 1.27072 0.89757 0.91550 0.88299 0.81112 0.77710 0.85584 0.90087 0.90313 0.91421 0.90911 0.91967 0.85388 0.81676 0.74555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.45 71.24 0.74 -0.30 16 2 C 0.06 1.27 7.22 43.10 0.31 1.58 16 3 C -0.28 -5.05 10.74 21.99 0.24 -4.82 16 4 C 0.06 1.08 11.45 83.54 0.96 2.04 16 5 N -0.38 -9.24 3.13 -348.08 -1.09 -10.33 16 6 C 0.16 4.12 5.25 86.38 0.45 4.57 16 7 C -0.08 -2.53 2.91 -11.54 -0.03 -2.57 16 8 H 0.11 3.60 8.06 -2.38 -0.02 3.58 16 9 C -0.13 -3.43 9.01 71.98 0.65 -2.78 16 10 C 0.46 19.11 7.22 71.24 0.51 19.63 16 11 O -0.54 -24.74 15.14 21.98 0.33 -24.41 16 12 O -0.35 -17.12 9.74 -48.83 -0.48 -17.60 16 13 C 0.30 16.58 2.41 29.10 0.07 16.65 16 14 H 0.05 2.77 7.16 -2.39 -0.02 2.75 16 15 C -0.56 -31.24 8.89 25.60 0.23 -31.01 16 16 H 0.07 4.09 7.81 -2.91 -0.02 4.06 16 17 C 0.03 1.36 5.30 84.66 0.45 1.81 16 18 N -0.89 -49.58 10.48 21.45 0.22 -49.35 16 19 Si 0.98 42.61 29.54 68.60 2.03 44.64 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 C -0.01 -0.70 5.67 24.83 0.14 -0.56 16 24 C -0.19 -9.54 9.04 22.19 0.20 -9.34 16 25 C -0.23 -9.56 10.91 22.19 0.24 -9.32 16 26 C -0.07 -2.84 12.09 66.97 0.81 -2.04 16 27 O -0.20 -9.77 10.64 0.82 0.01 -9.76 16 28 N -0.34 -9.52 12.35 -47.38 -0.59 -10.11 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.13 2.72 8.07 -2.39 -0.02 2.70 16 35 H 0.08 2.33 7.96 -2.38 -0.02 2.31 16 36 H 0.08 1.85 7.75 -2.39 -0.02 1.83 16 37 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.13 6.87 7.49 -2.91 -0.02 6.85 16 41 H 0.17 5.59 8.06 -2.91 -0.02 5.57 16 42 H 0.24 6.47 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -72.55 366.40 7.43 -65.11 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 1.02 Total: 28.25 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 5.97 Total: -16.45 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -1.45 Total: -69.79 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.13 Total: -51.77 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.55 7.43 -65.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.914 kcal (2) G-P(sol) polarization free energy of solvation -72.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds