Wall clock time and date at job start Tue Mar 31 2020 13:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39863 * 125.90145 * 2 1 4 4 C 1.35312 * 107.92527 * 180.14385 * 3 2 1 5 5 N 1.34953 * 107.74266 * 359.64076 * 4 3 2 6 6 C 1.46502 * 126.03718 * 180.24977 * 5 4 3 7 7 C 1.52998 * 109.47046 * 125.00175 * 6 5 4 8 8 H 1.08997 * 109.47400 * 304.99796 * 7 6 5 9 9 C 1.52998 * 109.47046 * 65.00143 * 7 6 5 10 10 C 1.50696 * 109.46774 * 184.99686 * 7 6 5 11 11 O 1.20826 * 120.00197 * 0.02562 * 10 7 6 12 12 O 1.34228 * 119.99953 * 179.97438 * 10 7 6 13 13 C 1.45204 * 117.00314 * 180.02562 * 12 10 7 14 14 H 1.09006 * 109.47007 * 330.00384 * 13 12 10 15 15 C 1.50701 * 109.47304 * 89.99848 * 13 12 10 16 16 H 1.07993 * 120.00391 * 240.00519 * 15 13 12 17 17 C 1.37879 * 119.99669 * 60.00001 * 15 13 12 18 18 N 1.31517 * 119.99852 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47141 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47172 * 120.00606 * 19 17 15 22 22 H 1.48507 * 109.46802 * 240.00041 * 19 17 15 23 23 C 1.50698 * 109.47476 * 210.00366 * 13 12 10 24 24 C 1.34513 * 125.79507 * 144.99866 * 23 13 12 25 25 C 1.41381 * 106.84374 * 180.02562 * 24 23 13 26 26 C 1.34516 * 106.83783 * 359.97438 * 25 24 23 27 27 O 1.34301 * 108.42339 * 359.73804 * 26 25 24 28 28 N 1.30837 * 125.89875 * 179.74336 * 2 1 3 29 29 H 1.08997 * 109.46821 * 270.23170 * 1 2 3 30 30 H 1.08997 * 109.46792 * 30.23322 * 1 2 3 31 31 H 1.08999 * 109.46853 * 150.23358 * 1 2 3 32 32 H 1.08008 * 126.03762 * 0.02562 * 3 2 1 33 33 H 1.08002 * 126.13302 * 179.91107 * 4 3 2 34 34 H 1.08999 * 109.46642 * 245.00527 * 6 5 4 35 35 H 1.08997 * 109.47253 * 4.99559 * 6 5 4 36 36 H 1.09003 * 109.47131 * 299.99732 * 9 7 6 37 37 H 1.08997 * 109.47303 * 59.99594 * 9 7 6 38 38 H 1.09000 * 109.47061 * 180.02562 * 9 7 6 39 39 H 0.97000 * 119.99666 * 179.97438 * 18 17 15 40 40 H 1.07998 * 126.57466 * 0.03555 * 24 23 13 41 41 H 1.07993 * 126.58182 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.78292 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6142 0.7153 -0.0032 5 7 3.6088 -0.6342 0.0029 6 6 4.7899 -1.5009 0.0072 7 6 4.7111 -2.4643 1.1931 8 1 4.5854 -1.8964 2.1149 9 6 3.5193 -3.4054 1.0073 10 6 5.9814 -3.2715 1.2697 11 8 6.8597 -3.0941 0.4592 12 8 6.1374 -4.1870 2.2389 13 6 7.3867 -4.9270 2.2518 14 1 7.7646 -5.0197 1.2336 15 6 8.3960 -4.1941 3.0974 16 1 9.3230 -3.8549 2.6594 17 6 8.1359 -3.9563 4.4304 18 7 7.0071 -4.3697 4.9640 19 14 9.3867 -3.0472 5.4784 20 1 10.5647 -2.6922 4.6469 21 1 8.7716 -1.8092 6.0208 22 1 9.8183 -3.9183 6.6011 23 6 7.1514 -6.2998 2.8272 24 6 7.7698 -7.4307 2.4423 25 6 7.2487 -8.4746 3.2408 26 6 6.3435 -7.9191 4.0663 27 8 6.2932 -6.6006 3.8155 28 7 2.2742 -1.0598 0.0047 29 1 -0.3633 0.0042 1.0276 30 1 -0.3633 0.8879 -0.5174 31 1 -0.3633 -0.8921 -0.5102 32 1 1.9923 2.1598 0.0004 33 1 4.4892 1.3485 -0.0054 34 1 4.8263 -2.0700 -0.9216 35 1 5.6885 -0.8900 0.0943 36 1 2.6005 -2.8216 0.9519 37 1 3.6450 -3.9733 0.0855 38 1 3.4629 -4.0915 1.8524 39 1 6.8243 -4.2028 5.9018 40 1 8.5203 -7.5234 1.6713 41 1 7.5245 -9.5178 3.1965 42 1 5.7600 -8.4436 4.8084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646914982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:11 Heat of formation + Delta-G solvation = 10.298730 kcal Electronic energy + Delta-G solvation = -26659.883906 eV Core-core repulsion = 22802.151767 eV Total energy + Delta-G solvation = -3857.732139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34032 -41.20110 -39.45443 -35.98461 -34.83950 -33.04242 -32.38322 -31.85683 -29.99698 -29.71996 -28.82388 -26.57337 -25.59503 -23.99767 -22.59103 -21.05103 -20.66152 -19.87245 -19.50901 -19.28141 -17.48165 -16.86137 -16.58170 -15.92412 -15.58440 -15.13507 -14.87140 -14.83296 -14.46457 -14.19196 -13.77755 -13.55705 -13.36498 -13.05080 -12.87118 -12.63682 -12.28079 -12.19593 -12.00226 -11.84910 -11.76805 -11.57764 -11.35073 -11.20912 -11.08016 -10.99889 -10.92190 -10.39649 -10.28941 -9.88446 -9.53397 -9.18239 -9.08734 -8.86477 -8.80495 -8.52328 -7.36899 -6.27355 -4.49858 1.92389 2.47338 2.79900 2.89178 3.12099 3.15894 3.23622 3.28318 3.54693 3.82934 4.20975 4.23905 4.53141 4.79618 4.82996 4.97593 5.04477 5.20784 5.32054 5.52546 5.53682 5.57339 5.67909 5.74088 5.80288 5.84899 5.87568 5.95285 6.09940 6.19818 6.24720 6.32334 6.41932 6.52763 6.78176 6.82525 6.88108 7.05929 7.17512 7.45357 7.57193 7.69544 7.75981 7.78658 8.38119 8.52161 8.87652 9.24281 10.71546 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.003621 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.607299 B = 7731.363061 C = 8639.676677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.062 3.938 3 C -0.278 4.278 4 C 0.059 3.941 5 N -0.365 5.365 6 C 0.150 3.850 7 C -0.096 4.096 8 H 0.106 0.894 9 C -0.149 4.149 10 C 0.471 3.529 11 O -0.534 6.534 12 O -0.328 6.328 13 C 0.278 3.722 14 H 0.071 0.929 15 C -0.549 4.549 16 H 0.075 0.925 17 C 0.080 3.920 18 N -0.825 5.825 19 Si 0.897 3.103 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.279 1.279 23 C 0.081 3.919 24 C -0.264 4.264 25 C -0.221 4.221 26 C -0.081 4.081 27 O -0.116 6.116 28 N -0.288 5.288 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.173 0.827 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.267 0.733 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.310 5.677 -6.450 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.307 4.307 4 C -0.088 4.088 5 N -0.146 5.146 6 C 0.029 3.971 7 C -0.116 4.116 8 H 0.124 0.876 9 C -0.206 4.206 10 C 0.313 3.687 11 O -0.427 6.427 12 O -0.242 6.242 13 C 0.226 3.774 14 H 0.089 0.911 15 C -0.585 4.585 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.458 5.458 19 Si 0.723 3.277 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.205 1.205 23 C 0.027 3.973 24 C -0.283 4.283 25 C -0.241 4.241 26 C -0.150 4.150 27 O -0.008 6.008 28 N -0.111 5.111 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.162 0.838 33 H 0.190 0.810 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.162 4.509 -6.326 12.013 hybrid contribution 1.207 1.084 0.816 1.816 sum -7.956 5.593 -5.510 11.178 Atomic orbital electron populations 1.20139 0.86975 1.02987 1.02802 1.22391 0.96897 0.91014 1.00083 1.21326 0.91650 0.99626 1.18134 1.22596 0.99753 0.84999 1.01430 1.48663 1.05317 1.04636 1.55963 1.21625 0.83313 0.92622 0.99577 1.21130 0.93906 0.96718 0.99850 0.87635 1.21962 0.97289 0.99104 1.02290 1.22805 0.87173 0.79812 0.78869 1.90553 1.43600 1.66877 1.41642 1.86734 1.43627 1.46592 1.47224 1.18821 0.80418 0.82406 0.95732 0.91097 1.21291 1.03822 1.38746 0.94651 0.90681 1.25174 0.95444 0.94545 0.97916 1.70061 1.21980 1.40453 1.13269 0.86452 0.81488 0.79555 0.80204 1.19231 1.20510 1.20496 1.22788 0.91077 0.95224 0.88204 1.21160 1.07991 0.91916 1.07238 1.21496 1.02080 0.99451 1.01041 1.23795 1.04269 0.83127 1.03844 1.84417 1.50334 1.22658 1.43406 1.77200 0.86604 1.22460 1.24884 0.90696 0.90741 0.91069 0.83841 0.81014 0.88873 0.87501 0.88863 0.92803 0.91235 0.92269 0.84933 0.85133 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.45 36.01 0.38 -0.24 16 2 C 0.06 0.77 7.22 -82.41 -0.59 0.18 16 3 C -0.28 -3.16 10.74 -40.02 -0.43 -3.59 16 4 C 0.06 0.69 11.45 -17.22 -0.20 0.49 16 5 N -0.36 -5.10 3.68 -61.37 -0.23 -5.33 16 6 C 0.15 2.17 5.31 -4.04 -0.02 2.14 16 7 C -0.10 -1.64 3.03 -91.78 -0.28 -1.92 16 8 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 9 C -0.15 -2.42 8.85 37.16 0.33 -2.09 16 10 C 0.47 10.10 7.22 36.00 0.26 10.36 16 11 O -0.53 -12.14 15.14 -18.75 -0.28 -12.43 16 12 O -0.33 -8.09 9.16 -42.00 -0.38 -8.48 16 13 C 0.28 7.10 2.58 -29.04 -0.07 7.03 16 14 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 15 C -0.55 -14.87 8.91 -34.44 -0.31 -15.18 16 16 H 0.08 2.03 7.81 -52.49 -0.41 1.62 16 17 C 0.08 2.13 5.24 -17.82 -0.09 2.04 16 18 N -0.82 -22.51 10.62 55.43 0.59 -21.92 16 19 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 C 0.08 1.99 5.59 -35.63 -0.20 1.80 16 24 C -0.26 -5.83 10.81 -39.70 -0.43 -6.26 16 25 C -0.22 -4.38 10.91 -39.70 -0.43 -4.81 16 26 C -0.08 -1.65 12.09 29.42 0.36 -1.30 16 27 O -0.12 -2.88 8.87 2.20 0.02 -2.86 16 28 N -0.29 -4.23 9.62 33.67 0.32 -3.91 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.11 1.44 7.88 -51.93 -0.41 1.03 16 36 H 0.09 1.46 5.36 -51.93 -0.28 1.19 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.13 2.65 8.06 -52.49 -0.42 2.23 16 41 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.18 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -31.77 362.10 -6.94 -38.71 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.68 Total: 6.55 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.74 Total: -11.34 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.69 Total: -31.15 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.65 Total: -23.76 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.77 -6.94 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.005 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds