Wall clock time and date at job start Tue Mar 31 2020 13:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39863 * 125.90145 * 2 1 4 4 C 1.35312 * 107.92527 * 180.14385 * 3 2 1 5 5 N 1.34953 * 107.74266 * 359.64076 * 4 3 2 6 6 C 1.46502 * 126.03718 * 180.24977 * 5 4 3 7 7 C 1.52998 * 109.47046 * 125.00175 * 6 5 4 8 8 H 1.08997 * 109.47400 * 304.99796 * 7 6 5 9 9 C 1.52998 * 109.47046 * 65.00143 * 7 6 5 10 10 C 1.50696 * 109.46774 * 184.99686 * 7 6 5 11 11 O 1.20826 * 120.00197 * 0.02562 * 10 7 6 12 12 O 1.34228 * 119.99953 * 179.97438 * 10 7 6 13 13 C 1.45204 * 117.00314 * 180.02562 * 12 10 7 14 14 H 1.09006 * 109.47007 * 330.00384 * 13 12 10 15 15 C 1.50701 * 109.47304 * 89.99848 * 13 12 10 16 16 H 1.07993 * 120.00391 * 240.00519 * 15 13 12 17 17 C 1.37879 * 119.99669 * 60.00001 * 15 13 12 18 18 N 1.31517 * 119.99852 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47141 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47172 * 120.00606 * 19 17 15 22 22 H 1.48507 * 109.46802 * 240.00041 * 19 17 15 23 23 C 1.50698 * 109.47476 * 210.00366 * 13 12 10 24 24 C 1.34513 * 125.79507 * 144.99866 * 23 13 12 25 25 C 1.41381 * 106.84374 * 180.02562 * 24 23 13 26 26 C 1.34516 * 106.83783 * 359.97438 * 25 24 23 27 27 O 1.34301 * 108.42339 * 359.73804 * 26 25 24 28 28 N 1.30837 * 125.89875 * 179.74336 * 2 1 3 29 29 H 1.08997 * 109.46821 * 270.23170 * 1 2 3 30 30 H 1.08997 * 109.46792 * 30.23322 * 1 2 3 31 31 H 1.08999 * 109.46853 * 150.23358 * 1 2 3 32 32 H 1.08008 * 126.03762 * 0.02562 * 3 2 1 33 33 H 1.08002 * 126.13302 * 179.91107 * 4 3 2 34 34 H 1.08999 * 109.46642 * 245.00527 * 6 5 4 35 35 H 1.08997 * 109.47253 * 4.99559 * 6 5 4 36 36 H 1.09003 * 109.47131 * 299.99732 * 9 7 6 37 37 H 1.08997 * 109.47303 * 59.99594 * 9 7 6 38 38 H 1.09000 * 109.47061 * 180.02562 * 9 7 6 39 39 H 0.97000 * 119.99666 * 179.97438 * 18 17 15 40 40 H 1.07998 * 126.57466 * 0.03555 * 24 23 13 41 41 H 1.07993 * 126.58182 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.78292 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6142 0.7153 -0.0032 5 7 3.6088 -0.6342 0.0029 6 6 4.7899 -1.5009 0.0072 7 6 4.7111 -2.4643 1.1931 8 1 4.5854 -1.8964 2.1149 9 6 3.5193 -3.4054 1.0073 10 6 5.9814 -3.2715 1.2697 11 8 6.8597 -3.0941 0.4592 12 8 6.1374 -4.1870 2.2389 13 6 7.3867 -4.9270 2.2518 14 1 7.7646 -5.0197 1.2336 15 6 8.3960 -4.1941 3.0974 16 1 9.3230 -3.8549 2.6594 17 6 8.1359 -3.9563 4.4304 18 7 7.0071 -4.3697 4.9640 19 14 9.3867 -3.0472 5.4784 20 1 10.5647 -2.6922 4.6469 21 1 8.7716 -1.8092 6.0208 22 1 9.8183 -3.9183 6.6011 23 6 7.1514 -6.2998 2.8272 24 6 7.7698 -7.4307 2.4423 25 6 7.2487 -8.4746 3.2408 26 6 6.3435 -7.9191 4.0663 27 8 6.2932 -6.6006 3.8155 28 7 2.2742 -1.0598 0.0047 29 1 -0.3633 0.0042 1.0276 30 1 -0.3633 0.8879 -0.5174 31 1 -0.3633 -0.8921 -0.5102 32 1 1.9923 2.1598 0.0004 33 1 4.4892 1.3485 -0.0054 34 1 4.8263 -2.0700 -0.9216 35 1 5.6885 -0.8900 0.0943 36 1 2.6005 -2.8216 0.9519 37 1 3.6450 -3.9733 0.0855 38 1 3.4629 -4.0915 1.8524 39 1 6.8243 -4.2028 5.9018 40 1 8.5203 -7.5234 1.6713 41 1 7.5245 -9.5178 3.1965 42 1 5.7600 -8.4436 4.8084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646914982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:10 Heat of formation + Delta-G solvation = -6.456967 kcal Electronic energy + Delta-G solvation = -26660.610488 eV Core-core repulsion = 22802.151767 eV Total energy + Delta-G solvation = -3858.458721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.05947 -42.18343 -41.17440 -37.68039 -36.26253 -34.97476 -33.60122 -33.45977 -31.68063 -30.77020 -29.79671 -28.42117 -26.77830 -25.66327 -24.18765 -22.37909 -21.97595 -21.28832 -21.11425 -20.53852 -19.14481 -18.44086 -18.28593 -17.49653 -17.01544 -16.91686 -16.46140 -16.27254 -16.06052 -15.39156 -15.09765 -14.91349 -14.45587 -14.40934 -14.09432 -13.82507 -13.60376 -13.56229 -13.38940 -13.27078 -13.18458 -13.05716 -12.97403 -12.85783 -12.78620 -12.39695 -12.31300 -12.20986 -11.86188 -11.45966 -11.14847 -10.98061 -10.82250 -10.50973 -10.14736 -9.46691 -9.09837 -8.25366 -6.56466 0.96116 1.15775 1.33802 1.36491 1.40219 1.43319 1.47943 1.90908 1.92250 2.23258 2.30863 2.57807 3.05258 3.38912 3.59896 3.76252 3.98307 4.01889 4.11261 4.27991 4.31284 4.38477 4.45529 4.46248 4.55497 4.62512 4.80197 4.86296 4.88981 4.91846 4.97544 5.10618 5.11882 5.20591 5.24478 5.31830 5.41844 5.54303 5.76145 5.84774 5.89157 5.93851 6.11517 6.48241 6.68683 6.84244 7.04052 7.22396 8.72266 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.003621 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.607299 B = 7731.363061 C = 8639.676677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.055 3.945 3 C -0.281 4.281 4 C 0.054 3.946 5 N -0.380 5.380 6 C 0.161 3.839 7 C -0.084 4.084 8 H 0.101 0.899 9 C -0.138 4.138 10 C 0.464 3.536 11 O -0.550 6.550 12 O -0.344 6.344 13 C 0.277 3.723 14 H 0.061 0.939 15 C -0.575 4.575 16 H 0.063 0.937 17 C 0.042 3.958 18 N -0.846 5.846 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.274 1.274 23 C 0.040 3.960 24 C -0.264 4.264 25 C -0.219 4.219 26 C -0.083 4.083 27 O -0.146 6.146 28 N -0.328 5.328 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.171 0.829 33 H 0.202 0.798 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.268 0.732 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 6.245 -6.137 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C -0.310 4.310 4 C -0.092 4.092 5 N -0.162 5.162 6 C 0.039 3.961 7 C -0.104 4.104 8 H 0.119 0.881 9 C -0.195 4.195 10 C 0.308 3.692 11 O -0.443 6.443 12 O -0.259 6.259 13 C 0.225 3.775 14 H 0.078 0.922 15 C -0.611 4.611 16 H 0.081 0.919 17 C -0.167 4.167 18 N -0.479 5.479 19 Si 0.780 3.220 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.012 4.012 24 C -0.284 4.284 25 C -0.238 4.238 26 C -0.151 4.151 27 O -0.039 6.039 28 N -0.151 5.151 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.188 0.812 33 H 0.218 0.782 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.164 0.836 41 H 0.188 0.812 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.816 5.085 -6.030 12.593 hybrid contribution 1.327 0.880 0.655 1.722 sum -8.489 5.965 -5.375 11.685 Atomic orbital electron populations 1.20276 0.84720 1.04121 1.03674 1.23067 0.98462 0.90953 0.98571 1.21727 0.91308 1.00635 1.17302 1.23212 1.01264 0.84312 1.00368 1.48600 1.04887 1.05324 1.57368 1.21424 0.84322 0.92431 0.97934 1.21111 0.91607 0.96601 1.01064 0.88075 1.21873 0.97311 0.98706 1.01625 1.23635 0.88393 0.79270 0.77919 1.90524 1.44606 1.67162 1.41995 1.86710 1.43175 1.47475 1.48526 1.18678 0.80615 0.83210 0.95004 0.92167 1.21436 1.04028 1.40061 0.95600 0.91865 1.25817 0.97099 0.95104 0.98650 1.70175 1.23190 1.41167 1.13388 0.85542 0.79307 0.78587 0.78555 1.19162 1.19790 1.19936 1.22747 0.93106 0.95562 0.89823 1.21552 1.07439 0.92015 1.07352 1.21908 1.01251 1.00759 0.99842 1.24715 1.04376 0.81765 1.04251 1.84356 1.50862 1.24960 1.43743 1.77125 0.87135 1.24029 1.26849 0.89846 0.88364 0.91195 0.81175 0.78161 0.89054 0.86544 0.87895 0.92553 0.92858 0.92248 0.83623 0.81228 0.75974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.45 71.24 0.74 -0.34 16 2 C 0.06 1.29 7.22 43.10 0.31 1.61 16 3 C -0.28 -5.74 10.74 21.99 0.24 -5.51 16 4 C 0.05 1.16 11.45 83.54 0.96 2.12 16 5 N -0.38 -10.34 3.68 -348.06 -1.28 -11.62 16 6 C 0.16 4.64 5.31 86.38 0.46 5.10 16 7 C -0.08 -2.93 3.03 -11.54 -0.03 -2.96 16 8 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 9 C -0.14 -4.58 8.85 71.98 0.64 -3.95 16 10 C 0.46 20.63 7.22 71.23 0.51 21.15 16 11 O -0.55 -25.83 15.14 21.97 0.33 -25.50 16 12 O -0.34 -17.72 9.16 -48.77 -0.45 -18.16 16 13 C 0.28 14.73 2.58 29.10 0.07 14.81 16 14 H 0.06 3.18 7.16 -2.38 -0.02 3.17 16 15 C -0.58 -32.14 8.91 25.60 0.23 -31.91 16 16 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 17 C 0.04 2.26 5.24 84.65 0.44 2.71 16 18 N -0.85 -46.92 10.62 21.45 0.23 -46.69 16 19 Si 0.96 42.52 29.54 68.60 2.03 44.55 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C 0.04 2.04 5.59 24.83 0.14 2.18 16 24 C -0.26 -11.61 10.81 22.19 0.24 -11.37 16 25 C -0.22 -8.19 10.91 22.19 0.24 -7.94 16 26 C -0.08 -3.24 12.09 66.97 0.81 -2.43 16 27 O -0.15 -7.29 8.87 0.83 0.01 -7.28 16 28 N -0.33 -9.41 9.62 -47.39 -0.46 -9.87 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.12 3.09 7.88 -2.39 -0.02 3.07 16 36 H 0.10 3.27 5.36 -2.39 -0.01 3.26 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.91 8.11 -2.39 -0.02 1.89 16 39 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 40 H 0.15 5.80 8.06 -2.91 -0.02 5.78 16 41 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.22 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -70.10 362.10 7.44 -62.67 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 1.03 Total: 28.67 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 6.00 Total: -16.76 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.51 Total: -68.18 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -0.11 Total: -50.94 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.10 7.44 -62.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.208 kcal (2) G-P(sol) polarization free energy of solvation -70.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds