Wall clock time and date at job start Tue Mar 31 2020 13:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39877 * 125.89552 * 2 1 4 4 C 1.35318 * 107.91697 * 179.97438 * 3 2 1 5 5 N 1.34952 * 107.74740 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.03652 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46830 * 125.00079 * 6 5 4 8 8 H 1.08995 * 109.47086 * 55.00064 * 7 6 5 9 9 C 1.52998 * 109.47207 * 294.99829 * 7 6 5 10 10 C 1.50700 * 109.46905 * 175.00218 * 7 6 5 11 11 O 1.20828 * 120.00382 * 359.97438 * 10 7 6 12 12 O 1.34229 * 120.00099 * 180.02562 * 10 7 6 13 13 C 1.45199 * 117.00516 * 180.02562 * 12 10 7 14 14 H 1.09003 * 109.46891 * 29.99649 * 13 12 10 15 15 C 1.50704 * 109.47036 * 269.99956 * 13 12 10 16 16 H 1.08001 * 119.99918 * 119.99336 * 15 13 12 17 17 C 1.37872 * 119.99689 * 300.00045 * 15 13 12 18 18 N 1.31510 * 120.00458 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00043 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47366 * 89.99346 * 19 17 15 21 21 H 1.48497 * 109.47159 * 209.99769 * 19 17 15 22 22 H 1.48503 * 109.46767 * 329.99628 * 19 17 15 23 23 C 1.50696 * 109.47584 * 149.99585 * 13 12 10 24 24 C 1.34512 * 125.79261 * 219.99851 * 23 13 12 25 25 C 1.41379 * 106.84086 * 180.02562 * 24 23 13 26 26 C 1.34512 * 106.84332 * 0.02562 * 25 24 23 27 27 O 1.34301 * 108.41872 * 359.97438 * 26 25 24 28 28 N 1.30836 * 125.90226 * 180.30216 * 2 1 3 29 29 H 1.08993 * 109.47180 * 90.00013 * 1 2 3 30 30 H 1.08998 * 109.46948 * 209.99862 * 1 2 3 31 31 H 1.09004 * 109.46748 * 329.99693 * 1 2 3 32 32 H 1.07995 * 126.04103 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.12363 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.46909 * 5.00240 * 6 5 4 35 35 H 1.08999 * 109.47107 * 245.00111 * 6 5 4 36 36 H 1.09005 * 109.47162 * 60.00204 * 9 7 6 37 37 H 1.08999 * 109.47613 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.47616 * 300.00440 * 9 7 6 39 39 H 0.96998 * 120.00609 * 180.02562 * 18 17 15 40 40 H 1.07996 * 126.57559 * 359.97438 * 24 23 13 41 41 H 1.08007 * 126.57604 * 180.02562 * 25 24 23 42 42 H 1.08004 * 125.79431 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 0.0006 5 7 3.6088 -0.6341 0.0004 6 6 4.7899 -1.5007 0.0003 7 6 4.7115 -2.4696 1.1817 8 1 3.7703 -3.0177 1.1403 9 6 4.7865 -1.6833 2.4920 10 6 5.8619 -3.4407 1.1121 11 8 6.6620 -3.3658 0.2099 12 8 5.9971 -4.3895 2.0519 13 6 7.1288 -5.2898 1.9219 14 1 7.9518 -4.7702 1.4310 15 6 6.7272 -6.4859 1.0978 16 1 7.2441 -6.7040 0.1750 17 6 5.6997 -7.3016 1.5219 18 7 5.0705 -7.0362 2.6458 19 14 5.2022 -8.7846 0.5009 20 1 5.9881 -9.9686 0.9320 21 1 3.7547 -9.0547 0.6928 22 1 5.4685 -8.5095 -0.9339 23 6 7.5674 -5.7463 3.2894 24 6 8.8401 -5.8992 3.6971 25 6 8.7900 -6.3408 5.0392 26 6 7.4897 -6.4319 5.3713 27 8 6.7538 -6.0704 4.3076 28 7 2.2742 -1.0598 -0.0056 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9922 2.1599 -0.0004 33 1 4.4891 1.3487 0.0003 34 1 5.6884 -0.8902 0.0900 35 1 4.8260 -2.0656 -0.9312 36 1 3.9545 -0.9809 2.5424 37 1 4.7302 -2.3735 3.3338 38 1 5.7278 -1.1351 2.5336 39 1 4.3479 -7.6102 2.9445 40 1 9.7295 -5.7199 3.1113 41 1 9.6339 -6.5625 5.6758 42 1 7.1030 -6.7423 6.3308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646914983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:16 Heat of formation + Delta-G solvation = 7.195260 kcal Electronic energy + Delta-G solvation = -26645.842966 eV Core-core repulsion = 22787.976250 eV Total energy + Delta-G solvation = -3857.866716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34296 -41.18335 -39.46102 -36.00157 -34.87223 -33.02104 -32.32494 -31.86293 -30.02707 -29.77952 -28.73930 -26.57884 -25.77511 -23.96862 -22.55847 -21.10130 -20.68920 -19.96282 -19.49336 -19.08428 -17.41730 -16.84417 -16.57865 -15.95597 -15.58009 -15.45188 -14.96591 -14.48977 -14.46631 -14.16199 -13.89147 -13.61951 -13.27371 -13.05464 -12.75508 -12.63730 -12.47234 -12.11716 -12.07813 -11.86516 -11.78429 -11.56105 -11.34979 -11.24759 -11.09424 -11.02841 -10.96233 -10.43296 -10.40181 -9.87294 -9.55880 -9.18166 -9.10457 -8.86469 -8.78501 -8.50504 -7.38966 -6.25534 -4.47761 1.94496 2.48711 2.81194 2.88014 3.12009 3.19294 3.26048 3.30111 3.52095 3.83556 4.22614 4.25279 4.51589 4.78230 4.83078 4.95330 5.05888 5.21064 5.27383 5.44891 5.55660 5.59379 5.66262 5.70491 5.79683 5.83524 5.86007 5.91777 5.96231 6.08370 6.17381 6.27630 6.38880 6.40999 6.72170 6.77127 6.85366 7.05651 7.17068 7.44015 7.59019 7.69891 7.77356 7.80665 8.38644 8.53270 8.87805 9.26233 10.73466 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.003647 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.302024 B = 7675.917469 C = 8544.012746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.063 3.937 3 C -0.278 4.278 4 C 0.056 3.944 5 N -0.363 5.363 6 C 0.150 3.850 7 C -0.098 4.098 8 H 0.117 0.883 9 C -0.138 4.138 10 C 0.471 3.529 11 O -0.533 6.533 12 O -0.329 6.329 13 C 0.278 3.722 14 H 0.071 0.929 15 C -0.550 4.550 16 H 0.074 0.926 17 C 0.081 3.919 18 N -0.823 5.823 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.269 1.269 23 C 0.079 3.921 24 C -0.265 4.265 25 C -0.222 4.222 26 C -0.082 4.082 27 O -0.111 6.111 28 N -0.288 5.288 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.172 0.828 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.268 0.732 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 13.129 0.257 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.308 4.308 4 C -0.090 4.090 5 N -0.145 5.145 6 C 0.029 3.971 7 C -0.118 4.118 8 H 0.135 0.865 9 C -0.195 4.195 10 C 0.314 3.686 11 O -0.426 6.426 12 O -0.243 6.243 13 C 0.226 3.774 14 H 0.089 0.911 15 C -0.586 4.586 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.456 5.456 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.194 1.194 23 C 0.025 3.975 24 C -0.284 4.284 25 C -0.242 4.242 26 C -0.151 4.151 27 O -0.003 6.003 28 N -0.112 5.112 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.161 0.839 33 H 0.189 0.811 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.654 11.694 0.160 12.252 hybrid contribution 0.183 -0.228 -0.398 0.493 sum -3.472 11.466 -0.238 11.982 Atomic orbital electron populations 1.20138 0.86980 1.03119 1.02691 1.22355 0.96902 0.90890 1.00182 1.21324 0.91654 0.99574 1.18219 1.22554 0.99653 0.85010 1.01779 1.48661 1.05373 1.04602 1.55816 1.21593 0.83201 0.92407 0.99862 1.21162 0.99154 0.95085 0.96443 0.86492 1.21691 1.01728 1.00105 0.96010 1.22768 0.84897 0.80281 0.80694 1.90556 1.44175 1.72858 1.34965 1.86735 1.50511 1.39016 1.48033 1.18798 0.84745 0.87987 0.85826 0.91090 1.21258 1.19434 1.09632 1.08279 0.90755 1.25156 0.95559 0.97579 0.94743 1.70026 1.20002 1.36580 1.18983 0.86507 0.77980 0.82335 0.80896 1.20148 1.20674 1.19359 1.22783 0.87801 0.98139 0.88757 1.21188 0.96670 1.14209 0.96383 1.21497 0.96711 1.09193 0.96781 1.23826 0.90801 1.07701 0.92774 1.84477 1.35527 1.62448 1.17824 1.77372 0.86516 1.22802 1.24471 0.90822 0.90961 0.90699 0.83864 0.81120 0.87848 0.88539 0.92074 0.90396 0.92472 0.92179 0.84965 0.85157 0.80026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.45 36.00 0.38 -0.29 16 2 C 0.06 0.82 7.22 -82.40 -0.59 0.22 16 3 C -0.28 -3.14 10.74 -40.01 -0.43 -3.57 16 4 C 0.06 0.64 11.45 -17.22 -0.20 0.44 16 5 N -0.36 -5.11 3.13 -61.36 -0.19 -5.30 16 6 C 0.15 2.18 5.25 -4.04 -0.02 2.16 16 7 C -0.10 -1.67 2.91 -91.77 -0.27 -1.94 16 8 H 0.12 2.16 8.06 -51.93 -0.42 1.75 16 9 C -0.14 -2.05 9.01 37.16 0.33 -1.72 16 10 C 0.47 10.07 7.22 36.01 0.26 10.33 16 11 O -0.53 -12.12 15.14 -18.75 -0.28 -12.41 16 12 O -0.33 -8.08 9.17 -41.28 -0.38 -8.46 16 13 C 0.28 7.09 2.58 -29.03 -0.07 7.02 16 14 H 0.07 1.76 7.15 -51.93 -0.37 1.39 16 15 C -0.55 -15.02 8.90 -34.44 -0.31 -15.32 16 16 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 17 C 0.08 2.17 5.24 -17.82 -0.09 2.08 16 18 N -0.82 -22.56 10.45 55.43 0.58 -21.98 16 19 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.08 1.94 5.68 -35.63 -0.20 1.74 16 24 C -0.27 -5.80 10.80 -39.70 -0.43 -6.22 16 25 C -0.22 -4.36 10.91 -39.70 -0.43 -4.79 16 26 C -0.08 -1.65 12.09 29.41 0.36 -1.29 16 27 O -0.11 -2.75 8.62 4.49 0.04 -2.71 16 28 N -0.29 -4.53 12.35 33.67 0.42 -4.11 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.10 1.49 7.96 -51.93 -0.41 1.08 16 36 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 37 H 0.08 1.27 8.11 -51.93 -0.42 0.84 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.13 2.61 8.06 -52.49 -0.42 2.18 16 41 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 42 H 0.18 2.89 8.06 -52.48 -0.42 2.47 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -32.14 366.24 -6.84 -38.98 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.80 Total: 5.78 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.72 Total: -11.16 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.80 Total: -31.39 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.62 Total: -23.57 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.14 -6.84 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.180 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds