Wall clock time and date at job start Tue Mar 31 2020 12:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48491 * 109.47078 * 269.99853 * 3 2 1 5 5 H 1.48496 * 109.46891 * 30.00219 * 3 2 1 6 6 H 1.48503 * 109.46859 * 149.99785 * 3 2 1 7 7 C 1.38657 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00238 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47499 * 89.99897 * 15 14 13 17 17 O 1.21278 * 119.99651 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00291 * 179.97438 * 16 15 14 19 19 C 1.47073 * 136.05653 * 359.63105 * 18 16 15 20 20 C 1.53754 * 87.88510 * 152.96152 * 19 18 16 21 21 C 1.53005 * 114.26269 * 139.79110 * 20 19 18 22 22 C 1.50703 * 109.46692 * 91.47679 * 21 20 19 23 23 N 1.34783 * 119.99797 * 179.97438 * 22 21 20 24 24 O 1.21280 * 120.00493 * 0.02562 * 22 21 20 25 25 C 1.47069 * 136.06004 * 180.02562 * 18 16 15 26 26 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 27 27 H 0.97001 * 120.00167 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 30 30 H 1.08000 * 119.93111 * 180.25380 * 13 12 11 31 31 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 32 32 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 33 33 H 1.08998 * 113.46643 * 267.69977 * 19 18 16 34 34 H 1.08998 * 113.46319 * 38.13507 * 19 18 16 35 35 H 1.08990 * 114.39838 * 272.67707 * 20 19 18 36 36 H 1.09003 * 109.46815 * 211.47329 * 21 20 19 37 37 H 1.08996 * 109.47144 * 331.47995 * 21 20 19 38 38 H 0.96997 * 120.00058 * 0.02562 * 23 22 21 39 39 H 0.97000 * 120.00264 * 179.97438 * 23 22 21 40 40 H 1.08999 * 113.46366 * 321.86074 * 25 18 16 41 41 H 1.08997 * 113.47080 * 92.24243 * 25 18 16 42 42 H 1.07996 * 120.03714 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9735 -2.4056 -0.1055 11 6 3.2229 -3.5743 -0.0993 12 6 3.8532 -4.7984 -0.2026 13 6 5.2297 -4.8612 -0.3232 14 6 5.9794 -3.6993 -0.3351 15 6 7.4787 -3.7722 -0.4672 16 6 7.8571 -3.7325 -1.9254 17 8 6.9941 -3.6525 -2.7738 18 7 9.1544 -3.7850 -2.2867 19 6 10.4455 -3.8737 -1.5879 20 6 11.0127 -4.5587 -2.8421 21 6 12.4300 -4.1174 -3.2130 22 6 13.4296 -5.0331 -2.5548 23 7 14.7497 -4.8351 -2.7412 24 8 13.0463 -5.9488 -1.8581 25 6 9.9025 -3.7719 -3.5528 26 6 5.3552 -2.4719 -0.2270 27 1 -0.4850 0.8400 0.0004 28 1 2.1477 -3.5258 -0.0091 29 1 3.2705 -5.7077 -0.1937 30 1 5.7201 -5.8197 -0.4080 31 1 7.9305 -2.9249 0.0485 32 1 7.8379 -4.7009 -0.0238 33 1 10.8956 -2.9024 -1.3827 34 1 10.4211 -4.5212 -0.7114 35 1 10.8786 -5.6401 -2.8641 36 1 12.5531 -4.1628 -4.2951 37 1 12.5934 -3.0954 -2.8712 38 1 15.0563 -4.1029 -3.2987 39 1 15.3932 -5.4242 -2.3173 40 1 9.4154 -4.3327 -4.3505 41 1 10.2087 -2.7737 -3.8658 42 1 5.9411 -1.5647 -0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647172068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:26 Heat of formation + Delta-G solvation = -38.066522 kcal Electronic energy + Delta-G solvation = -25173.525874 eV Core-core repulsion = 21313.696460 eV Total energy + Delta-G solvation = -3859.829414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87459 -39.68185 -39.08899 -37.91817 -36.45363 -34.17781 -32.48407 -32.28342 -31.76426 -29.42199 -28.34318 -26.56764 -26.04238 -25.05213 -22.28050 -21.67207 -20.78810 -20.39498 -19.11041 -17.94610 -17.64843 -17.23552 -17.07653 -16.87871 -16.15556 -15.83137 -15.34986 -15.16973 -14.93176 -14.45408 -14.09087 -13.76183 -13.71951 -13.50683 -13.24892 -13.07857 -12.79336 -12.53279 -12.38279 -12.18932 -12.09122 -11.84535 -11.59084 -11.25035 -10.92130 -10.77351 -10.71017 -10.69857 -10.42194 -10.20847 -10.10494 -9.72343 -9.32220 -8.83059 -8.80876 -8.07665 -7.28618 -6.34682 -4.01137 2.05115 2.15700 2.35531 2.69884 2.78829 3.02240 3.26163 3.30476 3.44649 3.85507 4.23738 4.29620 4.37112 4.45711 4.67373 4.77655 4.80696 4.89360 5.00629 5.08400 5.13522 5.17120 5.18672 5.24182 5.38554 5.42403 5.64014 5.74346 5.77064 5.90344 5.92908 6.18963 6.24963 6.32411 6.60092 6.79039 6.86118 7.17112 7.28542 7.38647 7.61469 7.69073 7.76099 7.87974 8.11306 8.25388 9.00973 9.64327 10.73238 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.002289 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.600059 B =12230.151334 C =12924.605751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.387 4.387 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.187 4.187 14 C -0.036 4.036 15 C -0.086 4.086 16 C 0.544 3.456 17 O -0.516 6.516 18 N -0.655 5.655 19 C 0.105 3.895 20 C -0.111 4.111 21 C -0.132 4.132 22 C 0.516 3.484 23 N -0.860 5.860 24 O -0.538 6.538 25 C 0.107 3.893 26 C -0.174 4.174 27 H 0.278 0.722 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.402 0.598 39 H 0.401 0.599 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.565 -7.521 -5.567 31.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.108 3.892 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.206 4.206 14 C -0.037 4.037 15 C -0.126 4.126 16 C 0.334 3.666 17 O -0.390 6.390 18 N -0.393 5.393 19 C -0.018 4.018 20 C -0.130 4.130 21 C -0.173 4.173 22 C 0.301 3.699 23 N -0.423 5.423 24 O -0.414 6.414 25 C -0.016 4.016 26 C -0.194 4.194 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.230 0.770 39 H 0.232 0.768 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 29.233 -7.626 -5.515 30.711 hybrid contribution 0.676 0.893 -0.163 1.132 sum 29.909 -6.733 -5.679 31.179 Atomic orbital electron populations 1.69646 1.05517 1.28344 1.48515 1.24452 0.95024 0.98754 0.95835 0.86184 0.80290 0.81520 0.78916 1.19943 1.20846 1.18421 1.20764 0.76930 0.96605 1.52002 0.87659 1.83565 1.22565 1.25638 1.80782 1.18999 0.91480 0.85578 0.93132 1.21298 1.01087 0.91940 1.09242 1.20739 0.94068 0.96763 0.97870 1.20434 0.93966 0.96529 1.09641 1.18672 0.92158 0.93080 0.99743 1.20513 0.94940 1.04544 0.92577 1.20370 0.79345 0.75316 0.91534 1.90776 1.47297 1.47985 1.52930 1.49621 1.04137 1.75138 1.10355 1.23130 0.81526 1.00016 0.97161 1.22863 0.91522 1.01802 0.96856 1.21595 0.93259 0.99892 1.02541 1.20681 0.83497 0.85117 0.80585 1.43932 1.07620 1.36171 1.54600 1.90783 1.79495 1.32365 1.38789 1.22964 0.89281 0.99907 0.89440 1.19929 0.92037 0.96886 1.10505 0.91157 0.84954 0.87120 0.87680 0.88398 0.88313 0.89871 0.89901 0.86550 0.87838 0.88077 0.77025 0.76834 0.90253 0.89900 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.96 55.48 0.77 -25.42 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 22.42 28.62 -169.99 -4.86 17.55 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.39 -11.36 9.95 30.89 0.31 -11.05 16 8 H 0.11 3.15 5.43 -52.49 -0.29 2.86 16 9 O -0.22 -6.10 8.59 0.05 0.00 -6.10 16 10 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 11 C -0.22 -5.01 9.17 -39.40 -0.36 -5.37 16 12 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 13 C -0.19 -3.46 9.70 -39.53 -0.38 -3.84 16 14 C -0.04 -0.67 4.37 -104.65 -0.46 -1.13 16 15 C -0.09 -1.21 5.66 -29.04 -0.16 -1.38 16 16 C 0.54 8.49 8.07 -10.99 -0.09 8.40 16 17 O -0.52 -10.62 16.81 5.56 0.09 -10.53 16 18 N -0.65 -7.47 3.69 -185.03 -0.68 -8.15 16 19 C 0.11 0.79 8.00 -8.37 -0.07 0.72 16 20 C -0.11 -0.71 3.54 -89.96 -0.32 -1.03 16 21 C -0.13 -0.43 5.62 -27.88 -0.16 -0.58 16 22 C 0.52 2.89 8.10 -10.98 -0.09 2.80 16 23 N -0.86 -1.87 8.87 31.22 0.28 -1.60 16 24 O -0.54 -5.63 16.57 5.56 0.09 -5.54 16 25 C 0.11 0.89 8.19 -8.49 -0.07 0.82 16 26 C -0.17 -3.75 9.65 -39.39 -0.38 -4.13 16 27 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.13 3.17 5.64 -52.48 -0.30 2.87 16 29 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 32 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 33 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.12 0.96 7.62 -51.93 -0.40 0.56 16 36 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.10 0.13 7.81 -51.93 -0.41 -0.27 16 38 H 0.40 -0.35 8.83 -40.82 -0.36 -0.71 16 39 H 0.40 0.79 8.93 -40.82 -0.36 0.42 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 42 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -38.53 363.94 -7.26 -45.78 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.45 Total: 0.79 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -2.98 Total: -12.28 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.37 Total: -35.16 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.19 Total: -22.17 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.86 Total: 17.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.53 -7.26 -45.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647172068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.715 kcal (2) G-P(sol) polarization free energy of solvation -38.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds