Wall clock time and date at job start Tue Mar 31 2020 12:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48491 * 109.47078 * 269.99853 * 3 2 1 5 5 H 1.48496 * 109.46891 * 30.00219 * 3 2 1 6 6 H 1.48503 * 109.46859 * 149.99785 * 3 2 1 7 7 C 1.38657 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00238 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47499 * 89.99897 * 15 14 13 17 17 O 1.21278 * 119.99651 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00291 * 179.97438 * 16 15 14 19 19 C 1.47073 * 136.05653 * 359.63105 * 18 16 15 20 20 C 1.53754 * 87.88510 * 152.96152 * 19 18 16 21 21 C 1.53005 * 114.26269 * 139.79110 * 20 19 18 22 22 C 1.50703 * 109.46692 * 91.47679 * 21 20 19 23 23 N 1.34783 * 119.99797 * 179.97438 * 22 21 20 24 24 O 1.21280 * 120.00493 * 0.02562 * 22 21 20 25 25 C 1.47069 * 136.06004 * 180.02562 * 18 16 15 26 26 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 27 27 H 0.97001 * 120.00167 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 30 30 H 1.08000 * 119.93111 * 180.25380 * 13 12 11 31 31 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 32 32 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 33 33 H 1.08998 * 113.46643 * 267.69977 * 19 18 16 34 34 H 1.08998 * 113.46319 * 38.13507 * 19 18 16 35 35 H 1.08990 * 114.39838 * 272.67707 * 20 19 18 36 36 H 1.09003 * 109.46815 * 211.47329 * 21 20 19 37 37 H 1.08996 * 109.47144 * 331.47995 * 21 20 19 38 38 H 0.96997 * 120.00058 * 0.02562 * 23 22 21 39 39 H 0.97000 * 120.00264 * 179.97438 * 23 22 21 40 40 H 1.08999 * 113.46366 * 321.86074 * 25 18 16 41 41 H 1.08997 * 113.47080 * 92.24243 * 25 18 16 42 42 H 1.07996 * 120.03714 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9735 -2.4056 -0.1055 11 6 3.2229 -3.5743 -0.0993 12 6 3.8532 -4.7984 -0.2026 13 6 5.2297 -4.8612 -0.3232 14 6 5.9794 -3.6993 -0.3351 15 6 7.4787 -3.7722 -0.4672 16 6 7.8571 -3.7325 -1.9254 17 8 6.9941 -3.6525 -2.7738 18 7 9.1544 -3.7850 -2.2867 19 6 10.4455 -3.8737 -1.5879 20 6 11.0127 -4.5587 -2.8421 21 6 12.4300 -4.1174 -3.2130 22 6 13.4296 -5.0331 -2.5548 23 7 14.7497 -4.8351 -2.7412 24 8 13.0463 -5.9488 -1.8581 25 6 9.9025 -3.7719 -3.5528 26 6 5.3552 -2.4719 -0.2270 27 1 -0.4850 0.8400 0.0004 28 1 2.1477 -3.5258 -0.0091 29 1 3.2705 -5.7077 -0.1937 30 1 5.7201 -5.8197 -0.4080 31 1 7.9305 -2.9249 0.0485 32 1 7.8379 -4.7009 -0.0238 33 1 10.8956 -2.9024 -1.3827 34 1 10.4211 -4.5212 -0.7114 35 1 10.8786 -5.6401 -2.8641 36 1 12.5531 -4.1628 -4.2951 37 1 12.5934 -3.0954 -2.8712 38 1 15.0563 -4.1029 -3.2987 39 1 15.3932 -5.4242 -2.3173 40 1 9.4154 -4.3327 -4.3505 41 1 10.2087 -2.7737 -3.8658 42 1 5.9411 -1.5647 -0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647172068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:25 Heat of formation + Delta-G solvation = -68.020681 kcal Electronic energy + Delta-G solvation = -25174.824783 eV Core-core repulsion = 21313.696460 eV Total energy + Delta-G solvation = -3861.128324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64212 -40.92972 -40.18804 -39.08173 -38.10208 -34.53823 -34.49386 -33.67438 -32.60334 -31.12025 -29.40206 -27.58061 -27.12602 -26.74628 -23.45398 -22.98381 -22.15011 -20.95712 -20.08115 -19.63050 -18.85775 -18.28982 -18.01956 -17.46168 -16.94497 -16.93315 -16.72055 -16.46015 -16.03149 -15.81739 -15.67880 -15.29572 -15.03442 -14.60262 -14.36511 -14.20794 -14.08109 -13.99885 -13.65915 -13.36576 -13.07178 -12.88633 -12.70149 -12.53023 -12.44501 -12.38438 -12.31363 -11.93750 -11.50163 -11.33717 -10.97415 -10.91159 -10.83956 -10.52064 -9.73311 -9.68321 -9.09583 -8.51060 -6.24062 0.44359 0.66446 1.28492 1.33982 1.49986 1.60993 1.79320 1.87922 2.27096 2.71585 2.74866 2.97997 3.13188 3.36773 3.64246 3.79073 3.90842 4.04080 4.07104 4.19192 4.25962 4.37162 4.49712 4.53105 4.55822 4.57835 4.65025 4.67218 4.68579 4.80951 4.89336 4.91235 4.99547 5.21821 5.36909 5.38562 5.61707 5.69147 5.74181 5.89117 6.01679 6.21800 6.60849 6.71243 6.82841 7.15963 7.49246 7.56873 8.60688 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.002289 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.600059 B =12230.151334 C =12924.605751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.401 4.401 8 H 0.080 0.920 9 O -0.245 6.245 10 C 0.119 3.881 11 C -0.238 4.238 12 C -0.077 4.077 13 C -0.173 4.173 14 C -0.029 4.029 15 C -0.083 4.083 16 C 0.539 3.461 17 O -0.583 6.583 18 N -0.658 5.658 19 C 0.102 3.898 20 C -0.097 4.097 21 C -0.123 4.123 22 C 0.512 3.488 23 N -0.843 5.843 24 O -0.596 6.596 25 C 0.101 3.899 26 C -0.180 4.180 27 H 0.285 0.715 28 H 0.110 0.890 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.419 0.581 39 H 0.403 0.597 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.173 -7.427 -5.893 36.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.097 0.903 9 O -0.153 6.153 10 C 0.071 3.929 11 C -0.258 4.258 12 C -0.095 4.095 13 C -0.192 4.192 14 C -0.030 4.030 15 C -0.122 4.122 16 C 0.330 3.670 17 O -0.462 6.462 18 N -0.393 5.393 19 C -0.019 4.019 20 C -0.116 4.116 21 C -0.163 4.163 22 C 0.298 3.702 23 N -0.406 5.406 24 O -0.477 6.477 25 C -0.021 4.021 26 C -0.199 4.199 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.250 0.750 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 33.967 -7.543 -5.856 35.284 hybrid contribution -0.455 0.568 -0.127 0.739 sum 33.512 -6.975 -5.983 34.749 Atomic orbital electron populations 1.69728 1.06838 1.29599 1.50186 1.25305 0.95956 1.02195 0.95525 0.85207 0.78866 0.77361 0.79187 1.19371 1.18713 1.18637 1.20717 0.78085 0.96171 1.52731 0.90283 1.83503 1.21285 1.27249 1.83285 1.19565 0.92995 0.85257 0.95109 1.21331 1.00233 0.93323 1.10885 1.21109 0.95247 0.96447 0.96652 1.20993 0.93448 0.98320 1.06394 1.19191 0.95046 0.91835 0.96915 1.20587 0.91526 1.07498 0.92556 1.20484 0.80243 0.74920 0.91384 1.90753 1.49457 1.51588 1.54441 1.49701 1.04027 1.72763 1.12839 1.23485 0.79215 1.01777 0.97452 1.22639 0.93021 1.00286 0.95679 1.21598 0.90133 1.00563 1.03966 1.21086 0.84633 0.84601 0.79889 1.43831 1.06692 1.36284 1.53830 1.90769 1.80490 1.34856 1.41558 1.23255 0.89116 1.01533 0.88197 1.20240 0.90752 0.98785 1.10165 0.90536 0.87236 0.84031 0.83813 0.85821 0.84939 0.86814 0.89813 0.88767 0.85249 0.85019 0.74987 0.76614 0.91751 0.87245 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.04 13.96 21.61 0.30 -56.73 16 2 C 0.01 0.51 5.49 84.84 0.47 0.97 16 3 Si 0.97 47.35 28.62 68.60 1.96 49.31 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.40 -24.94 9.95 67.92 0.68 -24.26 16 8 H 0.08 5.15 5.43 -2.91 -0.02 5.14 16 9 O -0.25 -14.27 8.59 -22.75 -0.20 -14.47 16 10 C 0.12 6.14 6.65 22.58 0.15 6.29 16 11 C -0.24 -11.53 9.17 22.39 0.21 -11.32 16 12 C -0.08 -2.97 10.04 22.25 0.22 -2.75 16 13 C -0.17 -5.99 9.70 22.30 0.22 -5.77 16 14 C -0.03 -1.03 4.37 -19.88 -0.09 -1.12 16 15 C -0.08 -2.05 5.66 29.10 0.16 -1.88 16 16 C 0.54 15.70 8.07 87.66 0.71 16.41 16 17 O -0.58 -23.74 16.81 -3.02 -0.05 -23.79 16 18 N -0.66 -13.20 3.69 -857.71 -3.16 -16.37 16 19 C 0.10 1.15 8.00 83.27 0.67 1.81 16 20 C -0.10 -0.95 3.54 -10.37 -0.04 -0.99 16 21 C -0.12 -0.27 5.62 29.85 0.17 -0.10 16 22 C 0.51 4.25 8.10 87.66 0.71 4.96 16 23 N -0.84 -1.02 8.87 -173.52 -1.54 -2.56 16 24 O -0.60 -11.60 16.57 -3.03 -0.05 -11.65 16 25 C 0.10 1.40 8.19 83.19 0.68 2.08 16 26 C -0.18 -7.75 9.65 22.39 0.22 -7.54 16 27 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 28 H 0.11 5.71 5.64 -2.91 -0.02 5.69 16 29 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 30 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.12 2.46 8.08 -2.39 -0.02 2.44 16 32 H 0.13 2.41 8.09 -2.38 -0.02 2.39 16 33 H 0.11 0.66 7.88 -2.39 -0.02 0.64 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.41 7.62 -2.39 -0.02 1.39 16 36 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.13 -0.43 7.81 -2.39 -0.02 -0.45 16 38 H 0.42 -2.38 8.83 -92.71 -0.82 -3.20 16 39 H 0.40 0.59 8.93 -92.71 -0.83 -0.24 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 0.98 8.11 -2.39 -0.02 0.96 16 42 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -91.29 363.94 1.82 -89.46 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -0.57 Total: 10.01 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 5.13 Total: -23.22 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -4.40 Total: -75.66 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.30 Total: -49.91 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.96 Total: 49.31 kcal Total: -91.29 1.82 -89.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647172068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.444 kcal (2) G-P(sol) polarization free energy of solvation -91.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds