Wall clock time and date at job start Tue Mar 31 2020 13:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47377 * 2 1 4 4 C 1.53041 * 109.45611 * 184.99983 * 3 2 1 5 5 C 1.53195 * 109.30585 * 178.61551 * 4 3 2 6 6 N 1.46927 * 108.77808 * 54.63639 * 5 4 3 7 7 S 1.65596 * 120.63051 * 126.36785 * 6 5 4 8 8 O 1.42096 * 106.40054 * 336.45726 * 7 6 5 9 9 O 1.42103 * 106.40091 * 203.54151 * 7 6 5 10 10 N 1.65593 * 107.22091 * 90.00183 * 7 6 5 11 11 C 1.47584 * 134.49803 * 89.99566 * 10 7 6 12 12 C 1.53946 * 86.12025 * 155.36171 * 11 10 7 13 13 O 1.42897 * 113.74068 * 269.15867 * 12 11 10 14 14 C 1.50700 * 113.74246 * 137.95222 * 12 11 10 15 15 H 1.07998 * 119.99659 * 4.91778 * 14 12 11 16 16 C 1.37870 * 120.00275 * 184.91298 * 14 12 11 17 17 N 1.31521 * 119.99939 * 13.83955 * 16 14 12 18 18 Si 1.86793 * 120.00241 * 193.83635 * 16 14 12 19 19 H 1.48503 * 109.47305 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47166 * 299.99995 * 18 16 14 21 21 H 1.48499 * 109.46987 * 59.99962 * 18 16 14 22 22 C 1.47585 * 134.49149 * 270.00400 * 10 7 6 23 23 C 1.46928 * 118.73768 * 306.64231 * 6 5 4 24 24 C 1.52764 * 109.01020 * 53.30558 * 23 6 5 25 25 H 1.09003 * 109.47081 * 300.00167 * 1 2 3 26 26 H 1.09005 * 109.46944 * 59.99472 * 1 2 3 27 27 H 1.08992 * 109.47336 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47081 * 239.99833 * 2 1 3 29 29 H 1.08996 * 109.47008 * 120.00311 * 2 1 3 30 30 H 1.08999 * 109.44725 * 304.96922 * 3 2 1 31 31 H 1.09001 * 109.49926 * 58.66578 * 4 3 2 32 32 H 1.08996 * 109.49588 * 298.56402 * 4 3 2 33 33 H 1.09000 * 109.58741 * 294.84792 * 5 4 3 34 34 H 1.09000 * 109.58504 * 174.42417 * 5 4 3 35 35 H 1.09003 * 113.76727 * 41.05741 * 11 10 7 36 36 H 1.09000 * 113.86995 * 269.68082 * 11 10 7 37 37 H 0.96698 * 114.00098 * 171.44601 * 13 12 11 38 38 H 0.97007 * 119.99483 * 5.87247 * 17 16 14 39 39 H 1.08994 * 113.77423 * 90.33548 * 22 10 7 40 40 H 1.09010 * 113.76672 * 318.93394 * 22 10 7 41 41 H 1.08990 * 109.58838 * 173.14583 * 23 6 5 42 42 H 1.09001 * 109.58604 * 293.56866 * 23 6 5 43 43 H 1.08993 * 109.56399 * 185.55392 * 24 23 6 44 44 H 1.09001 * 109.35273 * 65.49765 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5653 1.4439 -0.1258 5 6 4.0694 2.8901 -0.1602 6 7 3.5609 3.5966 1.0234 7 16 4.5967 4.3948 2.0394 8 8 5.8723 3.7933 1.8653 9 8 3.9412 4.4766 3.2975 10 7 4.7317 5.9477 1.4806 11 6 4.0027 7.2055 1.7347 12 6 5.2945 7.9202 1.2984 13 8 6.1903 8.1984 2.3764 14 6 5.0570 9.1133 0.4089 15 1 4.0488 9.4400 0.2015 16 6 6.1269 9.7879 -0.1399 17 7 7.3257 9.2472 -0.1196 18 14 5.8739 11.4697 -0.9123 19 1 7.1708 11.9783 -1.4268 20 1 4.9064 11.3591 -2.0334 21 1 5.3434 12.4085 0.1087 22 6 5.6294 6.6299 0.5283 23 6 2.1165 3.5762 1.2920 24 6 1.6336 2.1269 1.3071 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6057 1.9810 -0.8422 31 1 3.8550 0.9356 -1.0455 32 1 4.0013 0.9269 0.7291 33 1 3.7071 3.3819 -1.0630 34 1 5.1593 2.8975 -0.1499 35 1 3.7471 7.3611 2.7829 36 1 3.1606 7.3708 1.0626 37 1 7.0550 8.5269 2.0945 38 1 7.4431 8.3401 0.2035 39 1 5.2658 6.6246 -0.4992 40 1 6.6728 6.3259 0.6132 41 1 1.9182 4.0360 2.2600 42 1 1.5917 4.1251 0.5100 43 1 0.5485 2.1048 1.4072 44 1 2.0879 1.6036 2.1484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649872705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:46 Heat of formation + Delta-G solvation = -107.860496 kcal Electronic energy + Delta-G solvation = -26284.817903 eV Core-core repulsion = 22557.405946 eV Total energy + Delta-G solvation = -3727.411956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.02057 -38.75645 -36.90815 -35.48429 -34.81178 -34.25406 -32.33886 -31.28371 -30.26168 -27.61398 -25.49055 -25.16100 -24.32750 -23.45099 -21.75591 -20.32770 -19.87498 -18.56073 -18.03181 -17.47360 -16.76197 -15.97245 -15.09259 -14.91131 -14.85621 -14.70018 -14.36597 -14.28704 -14.04140 -13.91799 -13.41198 -13.37645 -13.07790 -12.79072 -12.44622 -12.37622 -12.09345 -11.81405 -11.76943 -11.70540 -11.64271 -11.35848 -11.30686 -11.19761 -11.04646 -10.87899 -10.86154 -10.49649 -10.43846 -10.41200 -10.20129 -9.29358 -9.05729 -8.83726 -8.64734 -8.01566 -6.64784 -4.44194 0.87539 3.13543 3.31334 3.36061 3.53732 3.81497 4.34178 4.42984 4.48590 4.54768 4.58606 4.86370 4.92615 5.03573 5.09052 5.18690 5.22735 5.26995 5.31420 5.36248 5.56967 5.59476 5.66126 5.70524 5.73503 5.80406 5.82240 5.84491 5.88382 5.93015 6.04504 6.13539 6.17447 6.23977 6.27336 6.42706 6.45916 6.74643 6.79978 7.32858 7.71207 8.11575 8.48093 8.90908 9.26278 10.66590 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.003519 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.207801 B = 7955.995674 C = 8337.305123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.126 4.126 5 C 0.119 3.881 6 N -1.011 6.011 7 S 2.791 3.209 8 O -0.980 6.980 9 O -0.982 6.982 10 N -1.034 6.034 11 C 0.142 3.858 12 C 0.222 3.778 13 O -0.567 6.567 14 C -0.617 4.617 15 H 0.064 0.936 16 C 0.036 3.964 17 N -0.898 5.898 18 Si 1.067 2.933 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.097 3.903 23 C 0.119 3.881 24 C -0.127 4.127 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.375 0.625 38 H 0.270 0.730 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 -14.162 -2.711 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.105 4.105 4 C -0.165 4.165 5 C -0.006 4.006 6 N -0.850 5.850 7 S 2.804 3.196 8 O -0.965 6.965 9 O -0.966 6.966 10 N -0.876 5.876 11 C 0.017 3.983 12 C 0.179 3.821 13 O -0.374 6.374 14 C -0.656 4.656 15 H 0.083 0.917 16 C -0.170 4.170 17 N -0.534 5.534 18 Si 0.894 3.106 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.029 4.029 23 C -0.006 4.006 24 C -0.166 4.166 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.224 0.776 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.484 -13.735 -2.184 17.417 hybrid contribution -0.633 -1.199 -0.078 1.358 sum -11.117 -14.934 -2.262 18.755 Atomic orbital electron populations 1.21823 0.95923 1.01401 1.01968 1.21573 0.95866 0.96323 1.01939 1.21149 0.95382 0.95884 0.98100 1.21927 0.95596 0.96540 1.02474 1.21377 0.99621 0.92037 0.87589 1.58410 1.18160 1.67205 1.41225 1.01613 0.72787 0.71884 0.73290 1.93551 1.40150 1.76042 1.86739 1.93545 1.76669 1.86813 1.39619 1.60546 1.46013 1.22328 1.58756 1.22851 0.96142 0.78631 1.00688 1.20166 0.86586 0.90644 0.84709 1.86232 1.28546 1.87716 1.34898 1.22276 0.96174 1.15084 1.32056 0.91733 1.25974 0.92343 1.04294 0.94423 1.70924 1.23580 1.15981 1.42949 0.83585 0.76009 0.74775 0.76252 1.20616 1.21216 1.21057 1.23942 0.92750 0.93020 0.93142 1.21289 0.80028 0.97322 1.02000 1.21904 1.01026 0.95736 0.97981 0.92413 0.92784 0.93005 0.92028 0.92047 0.90942 0.90861 0.91512 0.91576 0.89141 0.90834 0.89731 0.77589 0.91829 0.90063 0.91532 0.89184 0.91666 0.90623 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.93 5.40 -26.73 -0.14 -1.07 16 3 C -0.09 -0.79 2.15 -90.58 -0.19 -0.98 16 4 C -0.13 -1.29 5.36 -26.61 -0.14 -1.43 16 5 C 0.12 1.49 6.48 -3.71 -0.02 1.46 16 6 N -1.01 -14.58 3.35 -113.76 -0.38 -14.96 16 7 S 2.79 52.56 6.69 -107.50 -0.72 51.84 16 8 O -0.98 -20.81 16.70 -57.17 -0.95 -21.77 16 9 O -0.98 -20.49 16.69 -57.17 -0.95 -21.44 16 10 N -1.03 -20.74 4.17 -118.67 -0.50 -21.24 16 11 C 0.14 2.92 8.36 -2.97 -0.02 2.89 16 12 C 0.22 5.27 1.08 -90.84 -0.10 5.17 16 13 O -0.57 -14.26 13.45 -35.23 -0.47 -14.73 16 14 C -0.62 -15.56 8.56 -34.44 -0.29 -15.86 16 15 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 16 C 0.04 0.91 5.26 -17.82 -0.09 0.82 16 17 N -0.90 -23.95 12.80 55.43 0.71 -23.24 16 18 Si 1.07 22.74 29.93 -169.99 -5.09 17.65 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 20 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 C 0.10 2.10 7.40 -2.97 -0.02 2.08 16 23 C 0.12 1.44 6.45 -3.93 -0.03 1.42 16 24 C -0.13 -1.28 5.13 -26.83 -0.14 -1.41 16 25 H 0.06 0.40 6.53 -51.93 -0.34 0.06 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.23 6.92 -51.93 -0.36 0.87 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 37 H 0.38 9.26 6.95 45.56 0.32 9.58 16 38 H 0.27 7.07 5.52 -40.82 -0.23 6.84 16 39 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16 40 H 0.07 1.47 7.80 -51.92 -0.41 1.07 16 41 H 0.09 1.17 6.91 -51.93 -0.36 0.81 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.63 6.50 -51.93 -0.34 0.29 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -30.79 357.16 -10.22 -41.01 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.41 Total: 9.11 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.84 Total: -7.62 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.17 Total: -59.43 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -2.38 Total: -57.94 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.09 Total: 17.65 kcal Atomic # 16 Polarization: 52.56 SS G_CDS: -0.72 Total: 51.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.79 -10.22 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649872705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.847 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds