Wall clock time and date at job start Tue Mar 31 2020 12:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37881 * 120.01379 * 2 1 4 4 C 1.38649 * 120.65315 * 179.97438 * 3 2 1 5 5 C 1.37878 * 120.20006 * 0.02562 * 4 3 2 6 6 C 1.39072 * 119.63309 * 359.97438 * 5 4 3 7 7 C 1.47652 * 134.27100 * 180.02562 * 6 5 4 8 8 C 1.47086 * 127.14045 * 359.94417 * 7 6 5 9 9 O 1.21655 * 119.99531 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00039 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99531 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46883 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.46998 * 59.99945 * 12 11 10 14 14 O 1.42895 * 109.47000 * 300.00472 * 12 11 10 15 15 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 16 16 N 1.46503 * 109.47014 * 184.99892 * 15 12 11 17 17 C 1.36940 * 119.99764 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99788 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99542 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00058 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99644 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47473 * 59.99702 * 21 19 17 23 23 H 1.48496 * 109.47277 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46953 * 299.99752 * 21 19 17 25 25 C 1.36047 * 105.72315 * 180.20157 * 7 6 5 26 26 O 1.33811 * 109.85815 * 359.62984 * 25 7 6 27 27 C 1.34909 * 111.34671 * 0.39005 * 26 25 7 28 28 H 1.09003 * 109.47307 * 270.02201 * 1 2 3 29 29 H 1.09004 * 109.47084 * 30.02093 * 1 2 3 30 30 H 1.09003 * 109.47168 * 150.01753 * 1 2 3 31 31 H 1.07998 * 119.67586 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.89683 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.18609 * 180.02562 * 5 4 3 34 34 H 0.96992 * 120.00503 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46891 * 60.00097 * 11 10 8 36 36 H 1.08993 * 109.47378 * 299.99469 * 11 10 8 37 37 H 0.96696 * 114.00485 * 299.99339 * 14 12 11 38 38 H 1.08998 * 109.47192 * 305.00392 * 15 12 11 39 39 H 1.08998 * 109.46934 * 65.00238 * 15 12 11 40 40 H 0.96997 * 120.00215 * 0.02562 * 16 15 12 41 41 H 0.97008 * 119.99319 * 180.02562 * 20 19 17 42 42 H 1.07998 * 125.07252 * 179.72838 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1939 0.0000 4 6 3.5831 1.2094 0.0005 5 6 4.2899 0.0256 0.0005 6 6 3.6045 -1.1845 0.0005 7 6 4.0164 -2.6024 0.0010 8 6 5.3902 -3.1281 0.0005 9 8 6.3347 -2.3614 -0.0008 10 7 5.6024 -4.4590 0.0006 11 6 6.9708 -4.9824 -0.0005 12 6 6.9316 -6.5120 0.0004 13 1 6.4078 -6.8626 -0.8889 14 8 6.2471 -6.9702 1.1680 15 6 8.3606 -7.0587 0.0000 16 7 8.3249 -8.5184 -0.1195 17 6 9.4933 -9.2323 -0.1421 18 1 10.4410 -8.7192 -0.0714 19 6 9.4595 -10.6153 -0.2558 20 7 8.3045 -11.2405 -0.3415 21 14 11.0533 -11.5892 -0.2859 22 1 11.8028 -11.3510 0.9737 23 1 10.7467 -13.0365 -0.4140 24 1 11.8774 -11.1541 -1.4421 25 6 2.8618 -3.3218 -0.0039 26 8 1.8104 -2.4940 0.0009 27 6 2.2019 -1.2030 0.0006 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6516 2.1263 0.0004 32 1 4.1109 2.1516 0.0001 33 1 5.3698 0.0379 0.0014 34 1 4.8494 -5.0702 0.0013 35 1 7.4944 -4.6322 0.8890 36 1 7.4929 -4.6326 -0.8909 37 1 6.6586 -6.6950 1.9987 38 1 8.9101 -6.6385 -0.8423 39 1 8.8556 -6.7824 0.9309 40 1 7.4738 -8.9792 -0.1834 41 1 8.2810 -12.2071 -0.4206 42 1 2.8025 -4.4002 -0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753913469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:53 Heat of formation + Delta-G solvation = -51.341375 kcal Electronic energy + Delta-G solvation = -25129.766954 eV Core-core repulsion = 21269.361900 eV Total energy + Delta-G solvation = -3860.405055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.93631 -39.62344 -38.43523 -37.62686 -34.46974 -34.05713 -33.91293 -31.94261 -31.30596 -30.12817 -28.88194 -27.24127 -25.69086 -23.90363 -22.83899 -22.70155 -21.93329 -21.47593 -19.91783 -18.23183 -17.54392 -17.18602 -16.68747 -16.62951 -16.06273 -15.95349 -15.86010 -15.09394 -14.66933 -14.65455 -14.47400 -13.98353 -13.84883 -13.73345 -13.51365 -13.08376 -13.01006 -12.73907 -12.70890 -12.37302 -12.23089 -12.02753 -11.90221 -11.31337 -10.99058 -10.82055 -10.67821 -10.31934 -10.26011 -10.20983 -9.84223 -9.55903 -9.21020 -8.98257 -8.92458 -8.46629 -6.96907 -5.78584 -3.08401 0.41968 0.97304 1.44006 2.27838 2.95519 3.03975 3.42865 3.43943 3.47160 3.48304 4.03485 4.20346 4.38066 4.51063 4.51834 4.65798 4.79025 4.87292 4.94299 5.00302 5.06365 5.12803 5.19380 5.21150 5.40403 5.53126 5.53385 5.57810 5.76262 5.85073 5.90562 5.95887 6.04159 6.14142 6.15324 6.24598 6.30589 6.47908 6.63235 6.70880 7.36268 7.65865 7.87474 8.07741 8.39526 9.51180 10.07199 10.42857 11.43663 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037948 B = 0.001998 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.678890 B =14012.580838 C =14623.015234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.098 4.098 4 C -0.128 4.128 5 C -0.066 4.066 6 C -0.088 4.088 7 C -0.227 4.227 8 C 0.586 3.414 9 O -0.536 6.536 10 N -0.717 5.717 11 C 0.091 3.909 12 C 0.089 3.911 13 H 0.106 0.894 14 O -0.553 6.553 15 C 0.127 3.873 16 N -0.726 5.726 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.069 3.931 26 O -0.181 6.181 27 C 0.045 3.955 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.402 0.598 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.374 0.626 38 H 0.029 0.971 39 H 0.024 0.976 40 H 0.388 0.612 41 H 0.256 0.744 42 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.810 24.553 1.199 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.116 4.116 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.089 4.089 7 C -0.231 4.231 8 C 0.373 3.627 9 O -0.415 6.415 10 N -0.368 5.368 11 C -0.033 4.033 12 C 0.029 3.971 13 H 0.123 0.877 14 O -0.358 6.358 15 C -0.002 4.002 16 N -0.370 5.370 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.000 4.000 26 O -0.080 6.080 27 C -0.001 4.001 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.237 0.763 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.221 0.779 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.223 0.777 41 H 0.066 0.934 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.622 24.702 0.750 29.783 hybrid contribution 0.909 -0.929 0.327 1.340 sum -15.713 23.773 1.076 28.517 Atomic orbital electron populations 1.20750 0.90219 1.03224 1.02752 1.18792 0.96246 0.88272 1.03949 1.20856 0.94229 0.96388 1.00121 1.21108 0.93924 0.98087 1.01528 1.20714 1.00970 0.89792 0.96954 1.19399 0.92289 0.92739 1.04507 1.21005 0.93949 0.92826 1.15335 1.17085 0.86939 0.82184 0.76505 1.90789 1.43346 1.57236 1.50088 1.45736 1.09753 1.06104 1.75227 1.22139 0.82632 0.95090 1.03457 1.22413 0.95450 0.89637 0.89616 0.87652 1.86564 1.54796 1.78731 1.15747 1.21196 0.92503 0.87611 0.98849 1.42223 1.06859 0.99246 1.88721 1.19174 0.86281 0.89193 1.42967 0.91234 1.24764 0.96843 0.96510 1.02728 1.69665 1.23195 1.08183 1.56789 0.86244 0.82752 0.79164 0.77856 1.21235 1.21638 1.21231 1.24557 0.83432 0.96108 0.95898 1.83843 1.34636 1.14675 1.74842 1.19371 0.92381 0.83339 1.05048 0.90871 0.90981 0.91280 0.84675 0.84999 0.84421 0.76276 0.90823 0.90171 0.77889 0.95319 0.95859 0.77733 0.93406 0.76470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.07 -0.63 5.89 -104.50 -0.62 -1.24 16 3 C -0.10 -0.74 9.66 -39.56 -0.38 -1.12 16 4 C -0.13 -1.08 10.04 -39.56 -0.40 -1.48 16 5 C -0.07 -0.74 9.88 -39.40 -0.39 -1.13 16 6 C -0.09 -1.06 6.29 -104.98 -0.66 -1.72 16 7 C -0.23 -2.63 6.31 -103.25 -0.65 -3.28 16 8 C 0.59 7.79 7.80 -12.67 -0.10 7.69 16 9 O -0.54 -8.95 16.29 5.23 0.09 -8.87 16 10 N -0.72 -8.14 5.44 -61.49 -0.33 -8.47 16 11 C 0.09 1.15 5.34 -4.04 -0.02 1.13 16 12 C 0.09 1.30 3.09 -26.73 -0.08 1.22 16 13 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 14 O -0.55 -8.23 13.03 -35.23 -0.46 -8.69 16 15 C 0.13 2.41 5.90 -4.04 -0.02 2.38 16 16 N -0.73 -18.11 5.55 -59.91 -0.33 -18.44 16 17 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 21 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.07 0.59 11.52 29.95 0.34 0.94 16 26 O -0.18 -1.80 10.53 5.32 0.06 -1.74 16 27 C 0.05 0.48 7.05 -38.56 -0.27 0.21 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.14 1.61 7.54 -52.49 -0.40 1.22 16 34 H 0.40 3.68 7.27 -40.82 -0.30 3.38 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.37 4.63 9.04 45.56 0.41 5.04 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.39 10.35 7.67 -40.82 -0.31 10.03 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.22 0.98 7.41 -52.49 -0.39 0.59 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -35.31 365.23 -7.66 -42.97 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -4.75 Total: 12.00 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -3.14 Total: -4.16 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.06 Total: -54.34 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.32 Total: -19.30 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.31 -7.66 -42.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753913469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.371 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds