Wall clock time and date at job start Tue Mar 31 2020 12:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37881 * 120.01379 * 2 1 4 4 C 1.38649 * 120.65315 * 179.97438 * 3 2 1 5 5 C 1.37878 * 120.20006 * 0.02562 * 4 3 2 6 6 C 1.39072 * 119.63309 * 359.97438 * 5 4 3 7 7 C 1.47652 * 134.27100 * 180.02562 * 6 5 4 8 8 C 1.47086 * 127.14045 * 359.94417 * 7 6 5 9 9 O 1.21655 * 119.99531 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00039 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99531 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46883 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.46998 * 59.99945 * 12 11 10 14 14 O 1.42895 * 109.47000 * 300.00472 * 12 11 10 15 15 C 1.52997 * 109.47127 * 180.02562 * 12 11 10 16 16 N 1.46503 * 109.47014 * 184.99892 * 15 12 11 17 17 C 1.36940 * 119.99764 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99788 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99542 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00058 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99644 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47473 * 59.99702 * 21 19 17 23 23 H 1.48496 * 109.47277 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46953 * 299.99752 * 21 19 17 25 25 C 1.36047 * 105.72315 * 180.20157 * 7 6 5 26 26 O 1.33811 * 109.85815 * 359.62984 * 25 7 6 27 27 C 1.34909 * 111.34671 * 0.39005 * 26 25 7 28 28 H 1.09003 * 109.47307 * 270.02201 * 1 2 3 29 29 H 1.09004 * 109.47084 * 30.02093 * 1 2 3 30 30 H 1.09003 * 109.47168 * 150.01753 * 1 2 3 31 31 H 1.07998 * 119.67586 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.89683 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.18609 * 180.02562 * 5 4 3 34 34 H 0.96992 * 120.00503 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46891 * 60.00097 * 11 10 8 36 36 H 1.08993 * 109.47378 * 299.99469 * 11 10 8 37 37 H 0.96696 * 114.00485 * 299.99339 * 14 12 11 38 38 H 1.08998 * 109.47192 * 305.00392 * 15 12 11 39 39 H 1.08998 * 109.46934 * 65.00238 * 15 12 11 40 40 H 0.96997 * 120.00215 * 0.02562 * 16 15 12 41 41 H 0.97008 * 119.99319 * 180.02562 * 20 19 17 42 42 H 1.07998 * 125.07252 * 179.72838 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1939 0.0000 4 6 3.5831 1.2094 0.0005 5 6 4.2899 0.0256 0.0005 6 6 3.6045 -1.1845 0.0005 7 6 4.0164 -2.6024 0.0010 8 6 5.3902 -3.1281 0.0005 9 8 6.3347 -2.3614 -0.0008 10 7 5.6024 -4.4590 0.0006 11 6 6.9708 -4.9824 -0.0005 12 6 6.9316 -6.5120 0.0004 13 1 6.4078 -6.8626 -0.8889 14 8 6.2471 -6.9702 1.1680 15 6 8.3606 -7.0587 0.0000 16 7 8.3249 -8.5184 -0.1195 17 6 9.4933 -9.2323 -0.1421 18 1 10.4410 -8.7192 -0.0714 19 6 9.4595 -10.6153 -0.2558 20 7 8.3045 -11.2405 -0.3415 21 14 11.0533 -11.5892 -0.2859 22 1 11.8028 -11.3510 0.9737 23 1 10.7467 -13.0365 -0.4140 24 1 11.8774 -11.1541 -1.4421 25 6 2.8618 -3.3218 -0.0039 26 8 1.8104 -2.4940 0.0009 27 6 2.2019 -1.2030 0.0006 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6516 2.1263 0.0004 32 1 4.1109 2.1516 0.0001 33 1 5.3698 0.0379 0.0014 34 1 4.8494 -5.0702 0.0013 35 1 7.4944 -4.6322 0.8890 36 1 7.4929 -4.6326 -0.8909 37 1 6.6586 -6.6950 1.9987 38 1 8.9101 -6.6385 -0.8423 39 1 8.8556 -6.7824 0.9309 40 1 7.4738 -8.9792 -0.1834 41 1 8.2810 -12.2071 -0.4206 42 1 2.8025 -4.4002 -0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753913469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:53 Heat of formation + Delta-G solvation = -78.427601 kcal Electronic energy + Delta-G solvation = -25130.941501 eV Core-core repulsion = 21269.361900 eV Total energy + Delta-G solvation = -3861.579602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.67480 -40.68572 -39.10776 -38.89444 -36.09878 -35.37556 -34.62815 -33.23045 -32.59680 -31.06327 -30.13138 -27.81688 -27.22666 -25.13862 -24.10278 -23.40325 -22.96967 -22.75014 -20.88431 -19.28619 -18.96941 -18.28137 -17.73319 -17.47679 -17.14738 -16.99776 -16.65858 -16.42357 -16.09726 -15.77355 -15.42266 -15.31656 -14.97098 -14.69168 -14.35000 -14.29007 -14.21817 -13.89843 -13.73435 -13.27986 -13.23359 -12.96681 -12.88617 -12.72251 -12.58767 -12.20768 -12.01855 -11.97687 -11.81362 -11.34897 -11.09157 -10.98942 -10.90615 -10.23620 -9.68659 -9.18088 -9.01416 -7.95252 -5.24594 -0.29658 0.25666 0.64920 1.47656 1.50529 1.56709 1.58811 1.97250 2.13552 2.55963 2.68549 3.34873 3.36319 3.41343 3.50445 3.58084 3.68993 3.94970 3.99686 4.13375 4.20998 4.29389 4.31150 4.41609 4.43476 4.56505 4.60827 4.70893 4.79758 4.82611 4.93869 4.98115 5.19909 5.24961 5.25960 5.29248 5.39311 5.46535 5.47937 5.56064 6.00872 6.25948 6.43752 6.78522 7.10118 7.33255 8.08377 8.31630 9.27615 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037948 B = 0.001998 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.678890 B =14012.580838 C =14623.015234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 C -0.097 4.097 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.115 4.115 7 C -0.265 4.265 8 C 0.587 3.413 9 O -0.580 6.580 10 N -0.704 5.704 11 C 0.103 3.897 12 C 0.110 3.890 13 H 0.104 0.896 14 O -0.561 6.561 15 C 0.122 3.878 16 N -0.739 5.739 17 C -0.250 4.250 18 H 0.076 0.924 19 C -0.075 4.075 20 N -0.967 5.967 21 Si 0.975 3.025 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.278 1.278 25 C 0.100 3.900 26 O -0.181 6.181 27 C 0.024 3.976 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.118 0.882 34 H 0.415 0.585 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.386 0.614 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.116 25.740 1.373 31.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.270 4.270 8 C 0.376 3.624 9 O -0.461 6.461 10 N -0.356 5.356 11 C -0.021 4.021 12 C 0.050 3.950 13 H 0.122 0.878 14 O -0.368 6.368 15 C -0.006 4.006 16 N -0.382 5.382 17 C -0.382 4.382 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.617 5.617 21 Si 0.803 3.197 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.204 1.204 25 C 0.031 3.969 26 O -0.080 6.080 27 C -0.022 4.022 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.189 0.811 32 H 0.174 0.826 33 H 0.136 0.864 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -17.936 25.922 0.936 31.536 hybrid contribution 1.260 -1.184 0.292 1.754 sum -16.676 24.737 1.228 29.859 Atomic orbital electron populations 1.20815 0.88192 1.04144 1.03589 1.19284 0.97818 0.87852 1.02508 1.21292 0.93875 0.97479 0.98775 1.21444 0.94696 0.98033 0.99608 1.20758 1.00372 0.90991 0.99644 1.19717 0.93381 0.93247 1.05300 1.20936 0.93814 0.93413 1.18825 1.17318 0.87297 0.82173 0.75572 1.90759 1.44758 1.58274 1.52341 1.45549 1.09646 1.05810 1.74561 1.21885 0.83413 0.93432 1.03407 1.22081 0.92739 0.90478 0.89711 0.87814 1.86543 1.54856 1.79036 1.16348 1.21408 0.95552 0.84574 0.99042 1.42397 1.05540 1.01559 1.88737 1.19604 0.87495 0.89775 1.41322 0.90634 1.25594 0.99967 0.97701 1.03507 1.69821 1.25238 1.07983 1.58667 0.85198 0.79080 0.77206 0.78167 1.20397 1.22116 1.20397 1.25258 0.82150 0.97333 0.92132 1.83856 1.34876 1.14689 1.74608 1.19689 0.92067 0.84122 1.06359 0.89941 0.88790 0.91672 0.81110 0.82603 0.86357 0.74775 0.90745 0.90518 0.76550 0.94895 0.95130 0.79059 0.93965 0.72465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.23 0.71 -0.34 16 2 C -0.07 -1.16 5.89 -19.78 -0.12 -1.28 16 3 C -0.10 -1.24 9.66 22.28 0.22 -1.03 16 4 C -0.12 -1.92 10.04 22.28 0.22 -1.70 16 5 C -0.10 -2.33 9.88 22.38 0.22 -2.10 16 6 C -0.12 -2.85 6.29 -20.10 -0.13 -2.98 16 7 C -0.27 -6.18 6.31 -18.98 -0.12 -6.30 16 8 C 0.59 15.84 7.80 86.56 0.68 16.51 16 9 O -0.58 -20.21 16.29 -4.21 -0.07 -20.28 16 10 N -0.70 -15.41 5.44 -466.67 -2.54 -17.94 16 11 C 0.10 2.54 5.34 86.38 0.46 3.00 16 12 C 0.11 3.11 3.09 30.60 0.09 3.20 16 13 H 0.10 3.02 8.14 -2.39 -0.02 3.01 16 14 O -0.56 -15.96 13.03 -148.98 -1.94 -17.90 16 15 C 0.12 4.51 5.90 86.38 0.51 5.02 16 16 N -0.74 -36.80 5.55 -343.45 -1.91 -38.71 16 17 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 20 N -0.97 -59.12 13.06 21.65 0.28 -58.83 16 21 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 C 0.10 1.58 11.52 67.31 0.78 2.36 16 26 O -0.18 -3.37 10.53 -3.88 -0.04 -3.41 16 27 C 0.02 0.49 7.05 22.93 0.16 0.66 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.49 8.09 -2.38 -0.02 0.47 16 30 H 0.06 0.69 8.09 -2.39 -0.02 0.67 16 31 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.12 3.09 7.54 -2.91 -0.02 3.07 16 34 H 0.41 6.87 7.27 -92.71 -0.67 6.19 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.39 9.00 9.04 -74.06 -0.67 8.33 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.38 20.23 7.67 -92.71 -0.71 19.52 16 41 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 42 H 0.26 1.53 7.41 -2.91 -0.02 1.51 16 Total: -1.00 -77.79 365.23 -0.16 -77.96 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.97 Total: 33.00 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 4.99 Total: -1.87 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.16 Total: -115.49 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.05 Total: -41.60 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.79 -0.16 -77.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753913469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.472 kcal (2) G-P(sol) polarization free energy of solvation -77.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds