Wall clock time and date at job start Tue Mar 31 2020 12:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37887 * 120.01466 * 2 1 4 4 C 1.38637 * 120.65520 * 179.97438 * 3 2 1 5 5 C 1.37887 * 120.20276 * 0.03652 * 4 3 2 6 6 C 1.39068 * 119.62820 * 359.92902 * 5 4 3 7 7 C 1.47660 * 134.27037 * 180.02562 * 6 5 4 8 8 C 1.47078 * 127.14259 * 0.03257 * 7 6 5 9 9 O 1.21653 * 119.99446 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00376 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00117 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47189 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.47477 * 305.00169 * 12 11 10 14 14 O 1.42901 * 109.47106 * 65.00510 * 12 11 10 15 15 C 1.53002 * 109.47048 * 184.99983 * 12 11 10 16 16 N 1.46503 * 109.47061 * 179.97438 * 15 12 11 17 17 C 1.36938 * 120.00039 * 180.02562 * 16 15 12 18 18 H 1.08002 * 119.99911 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99813 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00109 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99849 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47154 * 59.99522 * 21 19 17 23 23 H 1.48499 * 109.47201 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46895 * 299.99900 * 21 19 17 25 25 C 1.36055 * 105.72310 * 180.02562 * 7 6 5 26 26 O 1.33813 * 109.85894 * 0.02562 * 25 7 6 27 27 C 1.34911 * 111.35091 * 359.97438 * 26 25 7 28 28 H 1.09010 * 109.46770 * 270.01605 * 1 2 3 29 29 H 1.08997 * 109.47207 * 30.01689 * 1 2 3 30 30 H 1.08998 * 109.46898 * 150.02546 * 1 2 3 31 31 H 1.07995 * 119.67058 * 0.02562 * 3 2 1 32 32 H 1.07992 * 119.90122 * 179.97438 * 4 3 2 33 33 H 1.08005 * 120.18965 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99988 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47392 * 300.00099 * 11 10 8 36 36 H 1.09001 * 109.47020 * 60.00142 * 11 10 8 37 37 H 0.96697 * 114.00275 * 59.99804 * 14 12 11 38 38 H 1.08998 * 109.47569 * 300.00083 * 15 12 11 39 39 H 1.08999 * 109.46849 * 60.00151 * 15 12 11 40 40 H 0.97005 * 119.99814 * 0.02562 * 16 15 12 41 41 H 0.96996 * 119.99859 * 180.02562 * 20 19 17 42 42 H 1.07998 * 125.07508 * 179.73744 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1940 0.0000 4 6 3.5830 1.2095 0.0005 5 6 4.2900 0.0256 0.0003 6 6 3.6046 -1.1844 0.0010 7 6 4.0165 -2.6024 0.0016 8 6 5.3902 -3.1281 0.0020 9 8 6.3347 -2.3614 0.0016 10 7 5.6025 -4.4590 0.0030 11 6 6.9707 -4.9825 0.0029 12 6 6.9315 -6.5120 0.0048 13 1 6.3334 -6.8592 0.8472 14 8 6.3496 -6.9751 -1.2155 15 6 8.3551 -7.0585 0.1304 16 7 8.3176 -8.5230 0.1328 17 6 9.4810 -9.2376 0.2370 18 1 10.4264 -8.7215 0.3171 19 6 9.4454 -10.6253 0.2387 20 7 8.2934 -11.2542 0.1407 21 14 11.0325 -11.6001 0.3817 22 1 11.7110 -11.2570 1.6572 23 1 10.7249 -13.0527 0.3603 24 1 11.9233 -11.2654 -0.7584 25 6 2.8618 -3.3219 0.0016 26 8 1.8104 -2.4940 0.0007 27 6 2.2019 -1.2030 0.0005 28 1 -0.3633 0.0003 1.0278 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6516 2.1262 0.0004 32 1 4.1109 2.1516 0.0001 33 1 5.3699 0.0379 0.0011 34 1 4.8493 -5.0702 0.0037 35 1 7.4934 -4.6332 -0.8875 36 1 7.4940 -4.6318 0.8925 37 1 6.8308 -6.7029 -2.0089 38 1 8.9533 -6.7114 -0.7121 39 1 8.7990 -6.7053 1.0612 40 1 7.4685 -8.9865 0.0605 41 1 8.2686 -12.2238 0.1423 42 1 2.8024 -4.4002 -0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753913470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:58 Heat of formation + Delta-G solvation = -51.239557 kcal Electronic energy + Delta-G solvation = -25126.326441 eV Core-core repulsion = 21265.925801 eV Total energy + Delta-G solvation = -3860.400640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.93589 -39.62232 -38.43606 -37.61978 -34.47999 -34.04163 -33.91266 -31.94303 -31.29397 -30.13023 -28.88176 -27.24202 -25.69120 -23.90437 -22.84268 -22.70289 -21.94219 -21.46222 -19.91228 -18.23144 -17.54568 -17.18052 -16.68867 -16.62347 -16.08201 -15.94214 -15.85703 -15.08586 -14.66618 -14.64476 -14.48404 -13.97768 -13.85267 -13.73770 -13.51391 -13.08621 -13.01805 -12.71607 -12.71140 -12.37251 -12.23142 -12.02886 -11.89760 -11.31421 -10.98158 -10.82168 -10.67320 -10.32046 -10.25840 -10.20728 -9.83921 -9.54800 -9.21280 -8.98348 -8.92209 -8.46695 -6.96536 -5.78239 -3.08084 0.41811 0.97209 1.43879 2.27670 2.95516 3.03892 3.42927 3.43853 3.47230 3.48383 4.03274 4.20222 4.37929 4.50930 4.51505 4.66755 4.78764 4.87233 4.94087 5.00217 5.06260 5.12769 5.20235 5.21055 5.40326 5.53111 5.53312 5.56895 5.76108 5.84950 5.90760 5.95823 6.04079 6.14140 6.15848 6.24531 6.30550 6.47888 6.63689 6.70768 7.35601 7.66024 7.89368 8.07400 8.39948 9.51612 10.07813 10.43725 11.43973 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037879 B = 0.001997 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.024101 B =14021.120749 C =14626.345540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.098 4.098 4 C -0.128 4.128 5 C -0.066 4.066 6 C -0.088 4.088 7 C -0.227 4.227 8 C 0.586 3.414 9 O -0.536 6.536 10 N -0.717 5.717 11 C 0.091 3.909 12 C 0.089 3.911 13 H 0.105 0.895 14 O -0.553 6.553 15 C 0.127 3.873 16 N -0.725 5.725 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.068 3.932 26 O -0.181 6.181 27 C 0.045 3.955 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.374 0.626 38 H 0.023 0.977 39 H 0.029 0.971 40 H 0.389 0.611 41 H 0.256 0.744 42 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 24.582 -0.778 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.116 4.116 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.089 4.089 7 C -0.231 4.231 8 C 0.373 3.627 9 O -0.414 6.414 10 N -0.368 5.368 11 C -0.033 4.033 12 C 0.029 3.971 13 H 0.123 0.877 14 O -0.358 6.358 15 C -0.002 4.002 16 N -0.370 5.370 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.000 4.000 26 O -0.080 6.080 27 C -0.001 4.001 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.237 0.763 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.222 0.778 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.224 0.776 41 H 0.066 0.934 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.603 24.734 -0.352 29.792 hybrid contribution 0.935 -0.928 -0.267 1.344 sum -15.668 23.806 -0.619 28.506 Atomic orbital electron populations 1.20750 0.90218 1.03225 1.02752 1.18793 0.96247 0.88272 1.03948 1.20854 0.94230 0.96389 1.00119 1.21106 0.93924 0.98088 1.01526 1.20717 1.00970 0.89792 0.96952 1.19403 0.92288 0.92736 1.04507 1.21008 0.93949 0.92830 1.15329 1.17082 0.86941 0.82186 0.76497 1.90788 1.43346 1.57234 1.50077 1.45754 1.09727 1.06109 1.75246 1.22151 0.82608 0.95090 1.03433 1.22395 0.96791 0.89588 0.88330 0.87746 1.86564 1.55060 1.78694 1.15445 1.21191 0.92531 0.87580 0.98923 1.42217 1.07473 0.98608 1.88741 1.19175 0.86693 0.88835 1.42914 0.91249 1.24764 0.96869 0.96468 1.02739 1.69662 1.23368 1.07810 1.56966 0.86248 0.82723 0.79166 0.77901 1.21237 1.21640 1.21236 1.24557 0.83434 0.96104 0.95909 1.83843 1.34633 1.14676 1.74846 1.19372 0.92380 0.83337 1.05047 0.90874 0.90978 0.91279 0.84674 0.84999 0.84419 0.76345 0.90799 0.90184 0.77828 0.95892 0.95330 0.77646 0.93409 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.07 -0.63 5.89 -104.50 -0.62 -1.24 16 3 C -0.10 -0.74 9.66 -39.56 -0.38 -1.12 16 4 C -0.13 -1.08 10.04 -39.56 -0.40 -1.48 16 5 C -0.07 -0.74 9.88 -39.40 -0.39 -1.13 16 6 C -0.09 -1.06 6.29 -104.97 -0.66 -1.72 16 7 C -0.23 -2.63 6.31 -103.25 -0.65 -3.28 16 8 C 0.59 7.79 7.80 -12.68 -0.10 7.69 16 9 O -0.54 -8.95 16.29 5.23 0.09 -8.87 16 10 N -0.72 -8.14 5.49 -61.49 -0.34 -8.48 16 11 C 0.09 1.16 5.31 -4.04 -0.02 1.13 16 12 C 0.09 1.30 3.09 -26.73 -0.08 1.22 16 13 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 14 O -0.55 -8.36 13.03 -35.23 -0.46 -8.82 16 15 C 0.13 2.39 5.92 -4.04 -0.02 2.37 16 16 N -0.73 -18.09 5.49 -59.91 -0.33 -18.42 16 17 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.07 0.59 11.52 29.95 0.34 0.94 16 26 O -0.18 -1.80 10.53 5.31 0.06 -1.74 16 27 C 0.05 0.48 7.05 -38.56 -0.27 0.21 16 28 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.14 1.61 7.54 -52.48 -0.40 1.22 16 34 H 0.40 3.65 7.39 -40.82 -0.30 3.35 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.37 4.78 9.05 45.56 0.41 5.19 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.39 10.37 7.54 -40.82 -0.31 10.07 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.22 0.97 7.41 -52.49 -0.39 0.58 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -35.34 365.23 -7.67 -43.00 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -4.75 Total: 12.08 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -3.14 Total: -4.16 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.06 Total: -54.32 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.32 Total: -19.43 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.34 -7.67 -43.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753913470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.237 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds