Wall clock time and date at job start Tue Mar 31 2020 12:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.46250 * 126.96059 * 2 1 4 4 C 1.39699 * 134.18608 * 359.97438 * 3 2 1 5 5 C 1.36627 * 119.70946 * 180.30344 * 4 3 2 6 6 C 1.38842 * 120.43951 * 359.97438 * 5 4 3 7 7 C 1.37793 * 120.74580 * 0.02562 * 6 5 4 8 8 C 1.39025 * 119.85387 * 359.95898 * 7 6 5 9 9 O 1.34723 * 133.24027 * 180.02562 * 8 7 6 10 10 C 1.34947 * 110.85963 * 180.02562 * 9 8 7 11 11 C 1.46979 * 125.12913 * 180.02562 * 10 9 8 12 12 O 1.21652 * 119.99885 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00009 * 0.02562 * 11 10 9 14 14 C 1.46502 * 119.99947 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46925 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.47216 * 295.00133 * 15 14 13 17 17 C 1.52999 * 109.47083 * 175.00128 * 15 14 13 18 18 O 1.42898 * 109.47018 * 305.00136 * 17 15 14 19 19 N 1.46498 * 109.47065 * 55.00022 * 15 14 13 20 20 C 1.36943 * 119.99752 * 204.72207 * 19 15 14 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 15 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 15 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.08999 * 109.47497 * 270.18654 * 1 2 3 29 29 H 1.08999 * 109.47258 * 30.19710 * 1 2 3 30 30 H 1.09010 * 109.46893 * 150.19190 * 1 2 3 31 31 H 1.07997 * 120.14798 * 0.27394 * 4 3 2 32 32 H 1.07998 * 119.78225 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.62306 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.06926 * 180.02562 * 7 6 5 35 35 H 0.96997 * 119.99994 * 0.02562 * 13 11 10 36 36 H 1.08997 * 109.46993 * 60.00870 * 14 13 11 37 37 H 1.08999 * 109.47017 * 300.00291 * 14 13 11 38 38 H 1.09003 * 109.47083 * 65.00130 * 17 15 14 39 39 H 1.08995 * 109.47300 * 184.99893 * 17 15 14 40 40 H 0.96709 * 114.00043 * 179.97438 * 18 17 15 41 41 H 0.97001 * 120.00384 * 25.00562 * 19 15 14 42 42 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1713 2.5490 -0.0004 5 6 3.2396 3.4006 -0.0066 6 6 4.5358 2.9031 -0.0118 7 6 4.7691 1.5451 -0.0115 8 6 3.6980 0.6589 -0.0050 9 8 3.6125 -0.6856 -0.0026 10 6 2.3236 -1.0852 0.0037 11 6 1.8716 -2.4837 0.0084 12 8 0.6821 -2.7386 0.0135 13 7 2.7751 -3.4839 0.0070 14 6 2.3246 -4.8779 0.0122 15 6 3.5404 -5.8067 0.0099 16 1 4.0893 -5.6845 -0.9238 17 6 3.0738 -7.2579 0.1410 18 8 2.2564 -7.3921 1.3054 19 7 4.4136 -5.4708 1.1372 20 6 5.7483 -5.7726 1.0831 21 1 6.1579 -6.2543 0.2075 22 6 6.5747 -5.4595 2.1536 23 7 6.0753 -4.8730 3.2209 24 14 8.3953 -5.8706 2.0795 25 1 9.0156 -5.1653 0.9293 26 1 9.0523 -5.4376 3.3389 27 1 8.5654 -7.3362 1.9117 28 1 -0.3634 0.0033 1.0276 29 1 -0.3634 0.8882 -0.5169 30 1 -0.3633 -0.8918 -0.5109 31 1 1.1651 2.9412 0.0036 32 1 3.0748 4.4680 -0.0074 33 1 5.3706 3.5883 -0.0162 34 1 5.7819 1.1700 -0.0152 35 1 3.7235 -3.2807 0.0033 36 1 1.7203 -5.0677 -0.8749 37 1 1.7276 -5.0635 0.9051 38 1 2.4974 -7.5354 -0.7415 39 1 3.9413 -7.9120 0.2287 40 1 1.9239 -8.2884 1.4515 41 1 4.0457 -5.0383 1.9237 42 1 6.6528 -4.6539 3.9688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755646569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:25 Heat of formation + Delta-G solvation = -45.789715 kcal Electronic energy + Delta-G solvation = -26250.663032 eV Core-core repulsion = 22390.498715 eV Total energy + Delta-G solvation = -3860.164317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49795 -39.32425 -37.89175 -37.14751 -35.02302 -33.96473 -33.42558 -31.46412 -30.63639 -30.00163 -28.49943 -27.52215 -25.50144 -23.83301 -23.35107 -22.72079 -20.68376 -20.22111 -19.86547 -18.13880 -17.48805 -17.05728 -16.61239 -16.39510 -16.28252 -15.66118 -15.13000 -14.76267 -14.46715 -14.18781 -13.98385 -13.68426 -13.46711 -13.40492 -13.16488 -12.96561 -12.84867 -12.68759 -12.35062 -12.32210 -12.00317 -11.87027 -11.45113 -11.03654 -10.88814 -10.83911 -10.61132 -10.13959 -9.97993 -9.89881 -9.77121 -9.38088 -8.98242 -8.81101 -8.69282 -8.16304 -7.04487 -5.80810 -3.11785 0.55568 1.24593 1.83758 2.55158 3.31925 3.39516 3.43662 3.44998 3.45991 3.58303 4.42624 4.49746 4.53064 4.75213 4.88846 4.91414 5.02071 5.15398 5.27445 5.35640 5.40136 5.48893 5.54571 5.56598 5.70509 5.85083 5.88575 5.93423 6.00092 6.02174 6.09490 6.18782 6.28449 6.30114 6.39279 6.47036 6.48694 6.69929 6.77122 7.03448 7.61930 7.81455 8.19142 8.34376 8.36184 9.47927 10.02404 10.38679 11.40625 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.003938 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.993909 B = 7108.371020 C = 9169.920445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.062 4.062 5 C -0.143 4.143 6 C -0.088 4.088 7 C -0.108 4.108 8 C 0.073 3.927 9 O -0.175 6.175 10 C -0.021 4.021 11 C 0.594 3.406 12 O -0.527 6.527 13 N -0.696 5.696 14 C 0.117 3.883 15 C 0.165 3.835 16 H 0.067 0.933 17 C 0.060 3.940 18 O -0.560 6.560 19 N -0.713 5.713 20 C -0.251 4.251 21 H 0.070 0.930 22 C -0.006 4.006 23 N -0.925 5.925 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.027 0.973 39 H 0.049 0.951 40 H 0.364 0.636 41 H 0.389 0.611 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 11.975 -8.844 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.080 4.080 5 C -0.161 4.161 6 C -0.106 4.106 7 C -0.126 4.126 8 C 0.025 3.975 9 O -0.077 6.077 10 C -0.071 4.071 11 C 0.379 3.621 12 O -0.406 6.406 13 N -0.346 5.346 14 C -0.007 4.007 15 C 0.054 3.946 16 H 0.084 0.916 17 C -0.022 4.022 18 O -0.364 6.364 19 N -0.355 5.355 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.572 5.572 24 Si 0.737 3.263 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.253 0.747 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.209 0.791 41 H 0.224 0.776 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.310 12.170 -8.811 17.170 hybrid contribution 1.420 -0.677 0.309 1.603 sum -6.890 11.493 -8.503 15.870 Atomic orbital electron populations 1.20399 0.87574 1.03584 1.03019 1.21330 0.96926 0.89439 1.01884 1.19818 0.92413 0.94303 1.07600 1.20307 0.99639 0.90261 0.97791 1.20758 0.92289 0.99878 1.03141 1.20974 0.97454 0.93710 0.98486 1.20065 0.97096 0.91174 1.04291 1.19753 0.95489 0.81286 1.01012 1.84114 1.27015 1.20724 1.75807 1.21913 0.81043 0.95027 1.09118 1.16626 0.85914 0.81741 0.77837 1.90804 1.15375 1.82521 1.51926 1.45953 1.10787 1.06167 1.71708 1.21670 0.97573 0.79030 1.02432 1.20598 0.90068 0.90323 0.93625 0.91558 1.23031 0.92953 1.00285 0.85916 1.86569 1.69649 1.33236 1.46898 1.42376 1.04913 1.71472 1.16740 1.19161 0.84305 1.33705 1.01006 0.91217 1.24746 0.98057 1.01108 0.96367 1.69672 1.34782 1.46256 1.06467 0.86298 0.85294 0.77947 0.76746 1.21211 1.21691 1.21314 0.90623 0.91632 0.89026 0.85453 0.85317 0.84694 0.84559 0.74676 0.91598 0.90094 0.95462 0.93226 0.79116 0.77646 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.81 36.00 0.35 -0.77 16 2 C -0.09 -1.40 6.39 -102.28 -0.65 -2.05 16 3 C -0.14 -1.98 6.37 -105.20 -0.67 -2.65 16 4 C -0.06 -0.68 10.06 -39.62 -0.40 -1.08 16 5 C -0.14 -1.33 9.98 -39.94 -0.40 -1.73 16 6 C -0.09 -0.86 10.01 -39.52 -0.40 -1.25 16 7 C -0.11 -1.33 10.07 -39.45 -0.40 -1.73 16 8 C 0.07 1.12 7.41 -38.35 -0.28 0.83 16 9 O -0.18 -3.04 10.28 2.75 0.03 -3.01 16 10 C -0.02 -0.36 7.07 -36.91 -0.26 -0.62 16 11 C 0.59 10.78 7.79 -12.72 -0.10 10.68 16 12 O -0.53 -10.12 14.62 5.23 0.08 -10.05 16 13 N -0.70 -12.64 5.38 -61.52 -0.33 -12.97 16 14 C 0.12 2.08 5.12 -4.04 -0.02 2.06 16 15 C 0.17 3.14 2.84 -67.93 -0.19 2.95 16 16 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 17 C 0.06 1.02 6.85 37.16 0.25 1.28 16 18 O -0.56 -9.90 12.64 -35.23 -0.45 -10.34 16 19 N -0.71 -17.19 4.51 -53.43 -0.24 -17.43 16 20 C -0.25 -6.65 9.93 -15.06 -0.15 -6.80 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.92 -27.58 13.06 55.49 0.72 -26.85 16 24 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.26 6.38 -51.92 -0.33 0.92 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.42 7.90 7.85 -40.82 -0.32 7.58 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.60 7.39 -51.93 -0.38 1.21 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.36 4.61 9.12 45.56 0.42 5.03 16 41 H 0.39 10.44 7.80 -40.82 -0.32 10.12 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -32.58 362.25 -7.87 -40.45 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -4.71 Total: 19.03 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.41 Total: -1.13 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.15 Total: -57.25 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.34 Total: -23.41 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.58 -7.87 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755646569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.336 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds