Wall clock time and date at job start Tue Mar 31 2020 12:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.46250 * 126.96059 * 2 1 4 4 C 1.39699 * 134.18608 * 359.97438 * 3 2 1 5 5 C 1.36627 * 119.70946 * 180.30344 * 4 3 2 6 6 C 1.38842 * 120.43951 * 359.97438 * 5 4 3 7 7 C 1.37793 * 120.74580 * 0.02562 * 6 5 4 8 8 C 1.39025 * 119.85387 * 359.95898 * 7 6 5 9 9 O 1.34723 * 133.24027 * 180.02562 * 8 7 6 10 10 C 1.34947 * 110.85963 * 180.02562 * 9 8 7 11 11 C 1.46979 * 125.12913 * 180.02562 * 10 9 8 12 12 O 1.21652 * 119.99885 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00009 * 0.02562 * 11 10 9 14 14 C 1.46502 * 119.99947 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46925 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.47216 * 295.00133 * 15 14 13 17 17 C 1.52999 * 109.47083 * 175.00128 * 15 14 13 18 18 O 1.42898 * 109.47018 * 305.00136 * 17 15 14 19 19 N 1.46498 * 109.47065 * 55.00022 * 15 14 13 20 20 C 1.36943 * 119.99752 * 204.72207 * 19 15 14 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 15 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 15 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.08999 * 109.47497 * 270.18654 * 1 2 3 29 29 H 1.08999 * 109.47258 * 30.19710 * 1 2 3 30 30 H 1.09010 * 109.46893 * 150.19190 * 1 2 3 31 31 H 1.07997 * 120.14798 * 0.27394 * 4 3 2 32 32 H 1.07998 * 119.78225 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.62306 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.06926 * 180.02562 * 7 6 5 35 35 H 0.96997 * 119.99994 * 0.02562 * 13 11 10 36 36 H 1.08997 * 109.46993 * 60.00870 * 14 13 11 37 37 H 1.08999 * 109.47017 * 300.00291 * 14 13 11 38 38 H 1.09003 * 109.47083 * 65.00130 * 17 15 14 39 39 H 1.08995 * 109.47300 * 184.99893 * 17 15 14 40 40 H 0.96709 * 114.00043 * 179.97438 * 18 17 15 41 41 H 0.97001 * 120.00384 * 25.00562 * 19 15 14 42 42 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1713 2.5490 -0.0004 5 6 3.2396 3.4006 -0.0066 6 6 4.5358 2.9031 -0.0118 7 6 4.7691 1.5451 -0.0115 8 6 3.6980 0.6589 -0.0050 9 8 3.6125 -0.6856 -0.0026 10 6 2.3236 -1.0852 0.0037 11 6 1.8716 -2.4837 0.0084 12 8 0.6821 -2.7386 0.0135 13 7 2.7751 -3.4839 0.0070 14 6 2.3246 -4.8779 0.0122 15 6 3.5404 -5.8067 0.0099 16 1 4.0893 -5.6845 -0.9238 17 6 3.0738 -7.2579 0.1410 18 8 2.2564 -7.3921 1.3054 19 7 4.4136 -5.4708 1.1372 20 6 5.7483 -5.7726 1.0831 21 1 6.1579 -6.2543 0.2075 22 6 6.5747 -5.4595 2.1536 23 7 6.0753 -4.8730 3.2209 24 14 8.3953 -5.8706 2.0795 25 1 9.0156 -5.1653 0.9293 26 1 9.0523 -5.4376 3.3389 27 1 8.5654 -7.3362 1.9117 28 1 -0.3634 0.0033 1.0276 29 1 -0.3634 0.8882 -0.5169 30 1 -0.3633 -0.8918 -0.5109 31 1 1.1651 2.9412 0.0036 32 1 3.0748 4.4680 -0.0074 33 1 5.3706 3.5883 -0.0162 34 1 5.7819 1.1700 -0.0152 35 1 3.7235 -3.2807 0.0033 36 1 1.7203 -5.0677 -0.8749 37 1 1.7276 -5.0635 0.9051 38 1 2.4974 -7.5354 -0.7415 39 1 3.9413 -7.9120 0.2287 40 1 1.9239 -8.2884 1.4515 41 1 4.0457 -5.0383 1.9237 42 1 6.6528 -4.6539 3.9688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755646569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:24 Heat of formation + Delta-G solvation = -70.316159 kcal Electronic energy + Delta-G solvation = -26251.726578 eV Core-core repulsion = 22390.498715 eV Total energy + Delta-G solvation = -3861.227863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.59051 -40.71580 -38.84070 -38.62988 -36.48113 -35.42714 -34.82742 -33.23971 -31.53922 -31.08620 -30.13707 -28.71723 -26.79190 -25.69552 -24.58120 -23.71436 -21.85207 -21.69594 -21.08063 -19.60793 -19.10705 -18.17610 -18.08279 -17.60117 -17.47119 -16.89922 -16.65247 -16.09494 -16.01340 -15.44807 -15.26003 -15.00428 -14.89836 -14.67104 -14.50245 -14.30450 -14.08264 -13.76577 -13.70425 -13.25341 -13.24113 -13.05456 -12.77725 -12.75836 -12.64822 -12.31451 -11.94363 -11.93158 -11.75875 -11.30245 -10.97921 -10.95792 -10.72570 -10.20828 -9.68242 -9.21604 -9.03456 -7.92031 -5.21906 -0.50090 0.33155 0.76133 1.43888 1.47541 1.49951 1.55911 1.97949 2.12266 2.56024 2.70112 3.31675 3.41234 3.52691 3.59959 3.75388 3.86178 3.92083 3.98837 4.10955 4.29101 4.40139 4.40464 4.49830 4.53386 4.58773 4.64234 4.72490 4.80703 4.92927 4.98242 4.99142 5.15905 5.18786 5.28157 5.34787 5.41403 5.46325 5.51586 5.60193 6.01070 6.26261 6.38055 6.91364 7.07454 7.34158 8.06309 8.31351 9.30789 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.003938 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.993909 B = 7108.371020 C = 9169.920445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.079 4.079 3 C -0.162 4.162 4 C -0.062 4.062 5 C -0.134 4.134 6 C -0.070 4.070 7 C -0.133 4.133 8 C 0.041 3.959 9 O -0.202 6.202 10 C -0.066 4.066 11 C 0.594 3.406 12 O -0.545 6.545 13 N -0.700 5.700 14 C 0.128 3.872 15 C 0.159 3.841 16 H 0.078 0.922 17 C 0.066 3.934 18 O -0.584 6.584 19 N -0.724 5.724 20 C -0.241 4.241 21 H 0.082 0.918 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.301 1.301 27 H -0.279 1.279 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.140 0.860 35 H 0.410 0.590 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.386 0.614 41 H 0.371 0.629 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 14.001 -10.324 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.163 4.163 4 C -0.079 4.079 5 C -0.152 4.152 6 C -0.088 4.088 7 C -0.151 4.151 8 C -0.007 4.007 9 O -0.105 6.105 10 C -0.115 4.115 11 C 0.380 3.620 12 O -0.426 6.426 13 N -0.349 5.349 14 C 0.004 3.996 15 C 0.050 3.950 16 H 0.096 0.904 17 C -0.014 4.014 18 O -0.390 6.390 19 N -0.364 5.364 20 C -0.372 4.372 21 H 0.100 0.900 22 C -0.264 4.264 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.202 1.202 26 H -0.228 1.228 27 H -0.205 1.205 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.174 0.826 32 H 0.188 0.812 33 H 0.190 0.810 34 H 0.157 0.843 35 H 0.246 0.754 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.234 0.766 41 H 0.203 0.797 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.586 14.153 -10.352 19.524 hybrid contribution 1.434 -1.144 0.699 1.963 sum -7.152 13.009 -9.653 17.708 Atomic orbital electron populations 1.20474 0.85899 1.04420 1.03577 1.21789 0.98042 0.89440 0.98952 1.20064 0.91485 0.95535 1.09201 1.20750 1.01834 0.88782 0.96571 1.21292 0.91390 1.01746 1.00730 1.21510 0.99205 0.92817 0.95249 1.20415 0.96772 0.92209 1.05738 1.20377 0.97274 0.80741 1.02263 1.84033 1.27234 1.22299 1.76952 1.21767 0.81746 0.94900 1.13063 1.16796 0.85664 0.82344 0.77165 1.90769 1.15773 1.83104 1.52937 1.45961 1.10447 1.06447 1.72050 1.21559 0.96920 0.78729 1.02381 1.20878 0.89923 0.91967 0.92218 0.90405 1.22842 0.93248 0.97920 0.87426 1.86522 1.69715 1.35434 1.47369 1.42490 1.04887 1.71651 1.17400 1.19598 0.85409 1.31479 1.00745 0.90017 1.25521 1.02149 1.02250 0.96449 1.69852 1.35864 1.48792 1.07290 0.85260 0.80530 0.77911 0.76293 1.20233 1.22780 1.20495 0.90012 0.88411 0.90475 0.82596 0.81193 0.81022 0.84257 0.75385 0.89294 0.92257 0.91263 0.94470 0.76585 0.79692 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.81 71.24 0.70 -1.43 16 2 C -0.08 -2.42 6.39 -18.35 -0.12 -2.54 16 3 C -0.16 -4.47 6.37 -20.24 -0.13 -4.60 16 4 C -0.06 -1.16 10.06 22.25 0.22 -0.93 16 5 C -0.13 -1.93 9.98 22.04 0.22 -1.71 16 6 C -0.07 -1.14 10.01 22.31 0.22 -0.91 16 7 C -0.13 -3.21 10.07 22.35 0.23 -2.99 16 8 C 0.04 1.29 7.41 23.07 0.17 1.46 16 9 O -0.20 -7.53 10.28 -13.06 -0.13 -7.67 16 10 C -0.07 -2.38 7.07 24.00 0.17 -2.21 16 11 C 0.59 22.74 7.79 86.53 0.67 23.42 16 12 O -0.54 -21.74 14.62 -4.20 -0.06 -21.81 16 13 N -0.70 -26.71 5.38 -466.80 -2.51 -29.23 16 14 C 0.13 4.63 5.12 86.38 0.44 5.07 16 15 C 0.16 6.05 2.84 44.99 0.13 6.18 16 16 H 0.08 2.78 8.08 -2.39 -0.02 2.76 16 17 C 0.07 2.19 6.85 71.98 0.49 2.68 16 18 O -0.58 -20.27 12.64 -148.98 -1.88 -22.15 16 19 N -0.72 -35.73 4.51 -322.94 -1.46 -37.18 16 20 C -0.24 -12.90 9.93 84.03 0.83 -12.06 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 23 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 24 Si 0.97 45.72 29.55 68.60 2.03 47.74 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.13 6.38 -2.38 -0.02 2.11 16 31 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.41 16.61 7.85 -92.71 -0.73 15.88 16 36 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.06 2.42 7.39 -2.39 -0.02 2.40 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.39 9.32 9.12 -74.05 -0.68 8.65 16 41 H 0.37 20.82 7.80 -92.71 -0.72 20.10 16 42 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -74.23 362.25 -0.06 -74.29 By element: Atomic # 1 Polarization: 50.75 SS G_CDS: -1.04 Total: 49.71 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 4.72 Total: 5.85 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -3.69 Total: -125.96 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -2.08 Total: -51.63 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.23 -0.06 -74.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755646569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.970 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds