Wall clock time and date at job start Tue Mar 31 2020 13:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.53000 * 109.46953 * 265.30838 * 8 7 6 10 10 C 1.50700 * 109.46953 * 179.97438 * 9 8 7 11 11 O 1.20829 * 120.00271 * 359.97438 * 10 9 8 12 12 O 1.34231 * 120.00106 * 179.97438 * 10 9 8 13 13 C 1.45195 * 117.00328 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47254 * 329.99653 * 13 12 10 15 15 C 1.50696 * 109.47290 * 89.99700 * 13 12 10 16 16 H 1.07998 * 120.00174 * 239.99871 * 15 13 12 17 17 C 1.37876 * 119.99653 * 60.00487 * 15 13 12 18 18 N 1.31518 * 119.99599 * 180.02562 * 17 15 13 19 19 Si 1.86796 * 120.00498 * 359.97438 * 17 15 13 20 20 H 1.48502 * 109.46920 * 90.00423 * 19 17 15 21 21 H 1.48501 * 109.47250 * 210.00336 * 19 17 15 22 22 H 1.48504 * 109.47075 * 330.00667 * 19 17 15 23 23 C 1.50704 * 109.47190 * 210.00017 * 13 12 10 24 24 C 1.34514 * 125.78789 * 144.99799 * 23 13 12 25 25 C 1.41384 * 106.83758 * 180.02562 * 24 23 13 26 26 C 1.34512 * 106.84134 * 359.97438 * 25 24 23 27 27 O 1.34300 * 125.78633 * 324.69283 * 23 13 12 28 28 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 29 29 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 30 30 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 31 31 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 32 32 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 33 33 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 34 34 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 35 35 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 36 36 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 37 37 H 1.09003 * 109.46866 * 299.99847 * 9 8 7 38 38 H 1.08995 * 109.47118 * 59.99745 * 9 8 7 39 39 H 0.97004 * 119.99849 * 179.97438 * 18 17 15 40 40 H 1.07994 * 126.58556 * 0.03178 * 24 23 13 41 41 H 1.08001 * 126.57769 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.79056 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5818 -3.0113 -1.4377 10 6 1.1151 -4.4443 -1.4379 11 8 1.0157 -5.0474 -0.3956 12 8 0.8099 -5.0506 -2.5959 13 6 0.3667 -6.4312 -2.5203 14 1 0.8312 -6.9154 -1.6613 15 6 -1.1321 -6.4701 -2.3692 16 1 -1.5754 -6.9333 -1.5002 17 6 -1.9375 -5.9145 -3.3406 18 7 -3.2456 -5.9481 -3.2085 19 14 -1.1709 -5.1129 -4.8436 20 1 -1.0032 -6.1279 -5.9146 21 1 -2.0552 -4.0230 -5.3286 22 1 0.1553 -4.5507 -4.4825 23 6 0.7636 -7.1559 -3.7807 24 6 1.1427 -8.4440 -3.8613 25 6 1.4231 -8.7040 -5.2225 26 6 1.1980 -7.5594 -5.8922 27 8 0.7932 -6.6267 -5.0147 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 5.0836 1.7155 1.0262 32 1 5.6089 0.9983 -0.5158 33 1 4.5560 2.4334 -0.5147 34 1 4.4892 -1.3485 -0.0129 35 1 2.6329 -3.2001 0.4332 36 1 0.9471 -2.6503 0.5891 37 1 0.8087 -2.3770 -1.8716 38 1 2.4945 -2.9267 -2.0274 39 1 -3.8123 -5.5568 -3.8918 40 1 1.2183 -9.1451 -3.0434 41 1 1.7544 -9.6417 -5.6436 42 1 1.3178 -7.4160 -6.9560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772395730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:52 Heat of formation + Delta-G solvation = 13.594017 kcal Electronic energy + Delta-G solvation = -26400.962523 eV Core-core repulsion = 22543.373278 eV Total energy + Delta-G solvation = -3857.589245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94047 -41.32491 -39.39882 -35.92517 -34.57847 -33.02899 -32.85962 -32.34022 -30.57866 -30.00803 -28.98319 -26.89771 -25.91099 -23.95973 -22.69017 -21.27174 -20.75877 -20.05289 -19.72417 -19.36239 -17.65765 -17.11177 -16.67709 -16.21014 -15.82561 -15.63177 -15.45402 -15.06969 -14.49358 -14.14611 -13.78152 -13.68781 -13.41477 -13.16656 -12.96555 -12.75745 -12.46583 -12.38694 -12.23332 -12.12651 -12.05490 -11.85318 -11.76419 -11.40160 -11.14701 -10.87098 -10.67271 -10.39595 -10.20540 -9.67626 -9.36927 -9.25563 -9.21192 -9.04856 -8.66882 -8.35154 -7.68320 -6.32804 -4.46492 1.80037 2.40654 2.42579 2.68552 3.09254 3.18839 3.26294 3.44521 3.52658 3.84791 4.14066 4.35211 4.40473 4.70649 4.87562 4.91417 5.04037 5.12710 5.18265 5.25328 5.31272 5.40043 5.54770 5.64311 5.67866 5.71255 5.74469 5.86249 5.97154 6.00633 6.16900 6.28635 6.32441 6.38370 6.46678 6.59780 6.69048 6.84259 6.93660 7.12900 7.24681 7.55316 7.67718 7.86522 8.17487 8.64374 8.79223 9.27022 10.74281 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.003426 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.543751 B = 8171.918083 C = 8729.539944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.083 3.917 3 N -0.302 5.302 4 N -0.382 5.382 5 C 0.105 3.895 6 C 0.056 3.944 7 C -0.228 4.228 8 C -0.027 4.027 9 C -0.111 4.111 10 C 0.459 3.541 11 O -0.520 6.520 12 O -0.359 6.359 13 C 0.250 3.750 14 H 0.090 0.910 15 C -0.536 4.536 16 H 0.090 0.910 17 C 0.088 3.912 18 N -0.868 5.868 19 Si 0.886 3.114 20 H -0.274 1.274 21 H -0.298 1.298 22 H -0.219 1.219 23 C 0.035 3.965 24 C -0.230 4.230 25 C -0.206 4.206 26 C -0.077 4.077 27 O -0.164 6.164 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.173 0.827 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.271 0.729 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.945 9.772 1.767 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 N -0.125 5.125 4 N -0.164 5.164 5 C -0.036 4.036 6 C -0.090 4.090 7 C -0.239 4.239 8 C -0.066 4.066 9 C -0.150 4.150 10 C 0.302 3.698 11 O -0.409 6.409 12 O -0.276 6.276 13 C 0.197 3.803 14 H 0.108 0.892 15 C -0.571 4.571 16 H 0.108 0.892 17 C -0.120 4.120 18 N -0.502 5.502 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.227 1.227 22 H -0.144 1.144 23 C -0.016 4.016 24 C -0.249 4.249 25 C -0.225 4.225 26 C -0.143 4.143 27 O -0.062 6.062 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.190 0.810 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 14.841 11.254 1.937 18.726 hybrid contribution 0.251 -0.899 -0.989 1.360 sum 15.092 10.355 0.948 18.327 Atomic orbital electron populations 1.20253 0.86504 1.03509 1.03418 1.22315 0.97001 0.90216 0.98756 1.77287 0.86358 1.22802 1.26048 1.48313 1.05514 1.04744 1.57852 1.21794 0.83741 0.94993 1.03117 1.22340 0.99293 0.84785 1.02545 1.20004 0.91747 0.96285 1.15853 1.19642 1.02479 0.89461 0.94979 1.21391 1.03316 0.91070 0.99178 1.23343 0.73885 0.89672 0.82886 1.90565 1.50150 1.66851 1.33373 1.86950 1.75484 1.31251 1.33939 1.19246 0.96140 0.77139 0.87736 0.89206 1.21100 0.86677 1.40295 1.09025 0.89196 1.25184 0.94684 0.93612 0.98554 1.69932 1.03753 1.41732 1.34820 0.86581 0.80440 0.79139 0.82008 1.20174 1.22741 1.14403 1.23127 0.99182 0.94464 0.84819 1.21220 1.10321 0.95986 0.97368 1.21627 1.07948 0.98900 0.94013 1.23787 1.05790 0.89003 0.95738 1.84498 1.65796 1.39096 1.16770 0.90191 0.89868 0.91055 0.90992 0.89604 0.89503 0.80974 0.90623 0.90027 0.88375 0.88841 0.91985 0.83949 0.84247 0.79542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.26 36.00 0.37 -0.54 16 2 C 0.08 1.13 7.22 -82.40 -0.59 0.54 16 3 N -0.30 -4.22 12.57 33.67 0.42 -3.79 16 4 N -0.38 -4.31 4.01 -68.16 -0.27 -4.58 16 5 C 0.11 0.68 11.47 59.85 0.69 1.37 16 6 C 0.06 0.61 11.40 -17.22 -0.20 0.41 16 7 C -0.23 -2.93 5.35 -105.05 -0.56 -3.49 16 8 C -0.03 -0.37 4.76 -27.88 -0.13 -0.50 16 9 C -0.11 -1.71 5.79 -27.88 -0.16 -1.87 16 10 C 0.46 9.40 7.92 36.01 0.29 9.69 16 11 O -0.52 -11.71 15.20 -18.75 -0.29 -11.99 16 12 O -0.36 -8.33 6.69 -42.01 -0.28 -8.61 16 13 C 0.25 6.11 2.55 -29.03 -0.07 6.04 16 14 H 0.09 2.14 7.16 -51.93 -0.37 1.76 16 15 C -0.54 -15.18 9.51 -34.44 -0.33 -15.50 16 16 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 17 C 0.09 2.53 5.45 -17.82 -0.10 2.43 16 18 N -0.87 -26.08 13.96 55.43 0.77 -25.31 16 19 Si 0.89 22.31 22.92 -169.99 -3.90 18.42 16 20 H -0.27 -6.81 6.01 56.52 0.34 -6.47 16 21 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.22 -5.31 4.92 56.52 0.28 -5.03 16 23 C 0.03 0.80 5.34 -35.62 -0.19 0.61 16 24 C -0.23 -4.67 10.81 -39.70 -0.43 -5.10 16 25 C -0.21 -3.68 10.91 -39.70 -0.43 -4.11 16 26 C -0.08 -1.42 11.73 29.42 0.34 -1.08 16 27 O -0.16 -3.70 4.85 2.19 0.01 -3.69 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.94 7.37 -51.93 -0.38 0.56 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.08 1.19 7.37 -51.93 -0.38 0.81 16 37 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 41 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.19 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -35.48 354.30 -5.65 -41.13 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.95 Total: 4.20 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.51 Total: -11.12 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.92 Total: -33.68 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.56 Total: -24.29 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -3.90 Total: 18.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.48 -5.65 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772395730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.726 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds