Wall clock time and date at job start Tue Mar 31 2020 13:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.53000 * 109.46953 * 265.30838 * 8 7 6 10 10 C 1.50700 * 109.46953 * 179.97438 * 9 8 7 11 11 O 1.20829 * 120.00271 * 359.97438 * 10 9 8 12 12 O 1.34231 * 120.00106 * 179.97438 * 10 9 8 13 13 C 1.45195 * 117.00328 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47254 * 329.99653 * 13 12 10 15 15 C 1.50696 * 109.47290 * 89.99700 * 13 12 10 16 16 H 1.07998 * 120.00174 * 239.99871 * 15 13 12 17 17 C 1.37876 * 119.99653 * 60.00487 * 15 13 12 18 18 N 1.31518 * 119.99599 * 180.02562 * 17 15 13 19 19 Si 1.86796 * 120.00498 * 359.97438 * 17 15 13 20 20 H 1.48502 * 109.46920 * 90.00423 * 19 17 15 21 21 H 1.48501 * 109.47250 * 210.00336 * 19 17 15 22 22 H 1.48504 * 109.47075 * 330.00667 * 19 17 15 23 23 C 1.50704 * 109.47190 * 210.00017 * 13 12 10 24 24 C 1.34514 * 125.78789 * 144.99799 * 23 13 12 25 25 C 1.41384 * 106.83758 * 180.02562 * 24 23 13 26 26 C 1.34512 * 106.84134 * 359.97438 * 25 24 23 27 27 O 1.34300 * 125.78633 * 324.69283 * 23 13 12 28 28 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 29 29 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 30 30 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 31 31 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 32 32 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 33 33 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 34 34 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 35 35 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 36 36 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 37 37 H 1.09003 * 109.46866 * 299.99847 * 9 8 7 38 38 H 1.08995 * 109.47118 * 59.99745 * 9 8 7 39 39 H 0.97004 * 119.99849 * 179.97438 * 18 17 15 40 40 H 1.07994 * 126.58556 * 0.03178 * 24 23 13 41 41 H 1.08001 * 126.57769 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.79056 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5818 -3.0113 -1.4377 10 6 1.1151 -4.4443 -1.4379 11 8 1.0157 -5.0474 -0.3956 12 8 0.8099 -5.0506 -2.5959 13 6 0.3667 -6.4312 -2.5203 14 1 0.8312 -6.9154 -1.6613 15 6 -1.1321 -6.4701 -2.3692 16 1 -1.5754 -6.9333 -1.5002 17 6 -1.9375 -5.9145 -3.3406 18 7 -3.2456 -5.9481 -3.2085 19 14 -1.1709 -5.1129 -4.8436 20 1 -1.0032 -6.1279 -5.9146 21 1 -2.0552 -4.0230 -5.3286 22 1 0.1553 -4.5507 -4.4825 23 6 0.7636 -7.1559 -3.7807 24 6 1.1427 -8.4440 -3.8613 25 6 1.4231 -8.7040 -5.2225 26 6 1.1980 -7.5594 -5.8922 27 8 0.7932 -6.6267 -5.0147 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 5.0836 1.7155 1.0262 32 1 5.6089 0.9983 -0.5158 33 1 4.5560 2.4334 -0.5147 34 1 4.4892 -1.3485 -0.0129 35 1 2.6329 -3.2001 0.4332 36 1 0.9471 -2.6503 0.5891 37 1 0.8087 -2.3770 -1.8716 38 1 2.4945 -2.9267 -2.0274 39 1 -3.8123 -5.5568 -3.8918 40 1 1.2183 -9.1451 -3.0434 41 1 1.7544 -9.6417 -5.6436 42 1 1.3178 -7.4160 -6.9560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772395730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:51 Heat of formation + Delta-G solvation = -9.103214 kcal Electronic energy + Delta-G solvation = -26401.946749 eV Core-core repulsion = 22543.373278 eV Total energy + Delta-G solvation = -3858.573471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.51777 -42.22113 -41.11195 -37.66141 -35.59181 -35.03502 -33.98320 -33.91803 -32.32691 -30.87368 -29.99290 -28.64655 -26.93291 -25.25300 -24.31867 -22.80456 -21.78456 -21.49178 -21.33183 -20.34397 -19.45337 -18.73763 -18.24676 -17.58275 -17.29224 -17.01793 -16.76657 -16.35973 -16.16628 -15.33535 -15.19321 -15.02020 -14.63389 -14.36193 -14.10277 -13.98253 -13.83934 -13.66823 -13.46375 -13.39001 -13.26427 -13.02818 -12.95047 -12.89166 -12.73434 -12.62104 -12.10265 -12.02657 -11.64066 -11.36940 -11.18949 -11.07779 -10.87860 -10.52235 -10.14652 -9.30551 -9.24921 -8.51466 -6.70394 0.82409 0.94202 1.26165 1.38580 1.53351 1.56768 1.68987 1.72137 1.80212 2.18065 2.35058 2.48881 2.94639 3.58480 3.79965 3.92298 4.12596 4.17149 4.22131 4.26093 4.28191 4.36927 4.44124 4.46805 4.49622 4.63690 4.70731 4.71853 4.74571 4.78699 4.95523 5.04752 5.08727 5.10617 5.13316 5.25289 5.29516 5.32804 5.70675 5.74069 5.80367 6.03901 6.18624 6.29823 6.40054 6.77134 6.99932 7.12155 8.59947 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.003426 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.543751 B = 8171.918083 C = 8729.539944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 N -0.335 5.335 4 N -0.382 5.382 5 C 0.095 3.905 6 C 0.071 3.929 7 C -0.252 4.252 8 C -0.015 4.015 9 C -0.100 4.100 10 C 0.450 3.550 11 O -0.546 6.546 12 O -0.365 6.365 13 C 0.260 3.740 14 H 0.084 0.916 15 C -0.551 4.551 16 H 0.045 0.955 17 C 0.042 3.958 18 N -0.916 5.916 19 Si 0.947 3.053 20 H -0.266 1.266 21 H -0.302 1.302 22 H -0.208 1.208 23 C -0.010 4.010 24 C -0.222 4.222 25 C -0.204 4.204 26 C -0.073 4.073 27 O -0.186 6.186 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.210 0.790 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.274 0.726 40 H 0.155 0.845 41 H 0.181 0.819 42 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.303 10.177 -0.230 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 N -0.159 5.159 4 N -0.163 5.163 5 C -0.045 4.045 6 C -0.076 4.076 7 C -0.263 4.263 8 C -0.053 4.053 9 C -0.138 4.138 10 C 0.296 3.704 11 O -0.437 6.437 12 O -0.282 6.282 13 C 0.207 3.793 14 H 0.102 0.898 15 C -0.586 4.586 16 H 0.063 0.937 17 C -0.161 4.161 18 N -0.553 5.553 19 Si 0.777 3.223 20 H -0.193 1.193 21 H -0.231 1.231 22 H -0.132 1.132 23 C -0.059 4.059 24 C -0.242 4.242 25 C -0.223 4.223 26 C -0.139 4.139 27 O -0.085 6.085 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.227 0.773 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.083 0.917 40 H 0.173 0.827 41 H 0.198 0.802 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 18.219 11.674 -0.041 21.638 hybrid contribution -0.637 -1.085 -0.285 1.290 sum 17.582 10.589 -0.326 20.527 Atomic orbital electron populations 1.20270 0.86243 1.03693 1.03543 1.22546 0.97613 0.90607 0.99007 1.77223 0.87901 1.23463 1.27345 1.48722 1.05626 1.05522 1.56419 1.22188 0.82842 0.94906 1.04563 1.22870 0.99701 0.85024 1.00008 1.19934 0.92746 0.95296 1.18334 1.19466 1.01936 0.90453 0.93474 1.21511 1.04369 0.86884 1.00998 1.24436 0.72911 0.91307 0.81770 1.90551 1.51212 1.67867 1.34024 1.86893 1.75773 1.30391 1.35173 1.18823 0.93532 0.77710 0.89209 0.89836 1.21184 0.89418 1.40336 1.07711 0.93674 1.25948 0.94851 0.94024 1.01290 1.70039 1.05186 1.43836 1.36230 0.85646 0.79846 0.78192 0.78611 1.19302 1.23117 1.13216 1.22770 1.03132 0.95297 0.84744 1.21662 1.08061 0.95051 0.99395 1.22071 1.07239 1.00518 0.92448 1.24803 1.03658 0.88298 0.97113 1.84364 1.66640 1.40606 1.16863 0.90067 0.90185 0.90380 0.89610 0.86533 0.89391 0.77319 0.90029 0.91813 0.87969 0.85983 0.91712 0.82684 0.80183 0.75088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 10.26 71.24 0.73 -1.14 16 2 C 0.07 1.80 7.22 43.10 0.31 2.11 16 3 N -0.34 -9.03 12.57 -47.38 -0.60 -9.62 16 4 N -0.38 -7.66 4.01 -369.56 -1.48 -9.15 16 5 C 0.09 0.93 11.47 127.77 1.47 2.40 16 6 C 0.07 1.34 11.40 83.54 0.95 2.29 16 7 C -0.25 -6.12 5.35 -20.14 -0.11 -6.23 16 8 C -0.01 -0.39 4.76 29.85 0.14 -0.25 16 9 C -0.10 -2.95 5.79 29.85 0.17 -2.78 16 10 C 0.45 18.53 7.92 71.24 0.56 19.09 16 11 O -0.55 -25.22 15.20 21.95 0.33 -24.89 16 12 O -0.37 -16.92 6.69 -48.79 -0.33 -17.25 16 13 C 0.26 13.01 2.55 29.10 0.07 13.08 16 14 H 0.08 4.13 7.16 -2.39 -0.02 4.12 16 15 C -0.55 -32.66 9.51 25.60 0.24 -32.41 16 16 H 0.04 2.97 8.06 -2.91 -0.02 2.95 16 17 C 0.04 2.49 5.45 84.65 0.46 2.96 16 18 N -0.92 -57.28 13.96 21.45 0.30 -56.98 16 19 Si 0.95 46.60 22.92 68.60 1.57 48.17 16 20 H -0.27 -12.50 6.01 99.48 0.60 -11.90 16 21 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 22 H -0.21 -9.67 4.92 99.48 0.49 -9.18 16 23 C -0.01 -0.44 5.34 24.83 0.13 -0.31 16 24 C -0.22 -8.60 10.81 22.19 0.24 -8.36 16 25 C -0.20 -6.45 10.91 22.19 0.24 -6.21 16 26 C -0.07 -2.41 11.73 66.97 0.79 -1.62 16 27 O -0.19 -7.93 4.85 0.86 0.00 -7.92 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 1.89 7.37 -2.39 -0.02 1.87 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 36 H 0.06 1.90 7.37 -2.39 -0.02 1.88 16 37 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.12 2.93 8.14 -2.39 -0.02 2.92 16 39 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.16 5.41 8.06 -2.91 -0.02 5.39 16 41 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 42 H 0.23 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -80.85 354.30 6.91 -73.94 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.70 Total: 21.07 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 6.41 Total: -17.38 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.78 Total: -75.75 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: 0.01 Total: -50.06 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.57 Total: 48.17 kcal Total: -80.85 6.91 -73.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772395730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.836 kcal (2) G-P(sol) polarization free energy of solvation -80.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds