Wall clock time and date at job start Tue Mar 31 2020 12:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.44119 * 2 1 4 4 O 1.42993 * 109.44274 * 119.89733 * 2 1 3 5 5 C 1.35987 * 116.70944 * 166.44757 * 4 2 1 6 6 C 1.38389 * 120.66431 * 147.17659 * 5 4 2 7 7 C 1.38313 * 119.87823 * 180.10126 * 6 5 4 8 8 C 1.38281 * 120.25231 * 359.94303 * 7 6 5 9 9 C 1.38288 * 120.20352 * 0.02562 * 8 7 6 10 10 C 1.38503 * 119.81258 * 0.02562 * 9 8 7 11 11 N 1.40212 * 120.74116 * 180.02562 * 10 9 8 12 12 C 1.46504 * 120.50904 * 15.48130 * 11 10 9 13 13 C 1.50702 * 109.47028 * 269.97381 * 12 11 10 14 14 O 1.21278 * 119.99753 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99661 * 179.97438 * 13 12 11 16 16 C 1.46493 * 120.00464 * 0.02562 * 15 13 12 17 17 C 1.46505 * 119.99762 * 180.02562 * 15 13 12 18 18 C 1.50700 * 109.47486 * 89.99997 * 17 15 13 19 19 H 1.08000 * 119.99483 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00332 * 180.02562 * 18 17 15 21 21 N 1.31508 * 119.99605 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99965 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46859 * 59.99944 * 22 20 18 24 24 H 1.48502 * 109.46773 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47260 * 300.00229 * 22 20 18 26 26 C 1.35091 * 118.98313 * 195.45684 * 11 10 9 27 27 O 1.21293 * 120.13467 * 181.65110 * 26 11 10 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.93774 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.93603 * 1 2 3 31 31 H 1.08002 * 120.05865 * 0.09875 * 6 5 4 32 32 H 1.07992 * 119.86978 * 179.97438 * 7 6 5 33 33 H 1.08005 * 119.89067 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.08760 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47013 * 29.97739 * 12 11 10 36 36 H 1.08997 * 109.47112 * 149.97664 * 12 11 10 37 37 H 1.08999 * 109.46885 * 90.00020 * 16 15 13 38 38 H 1.09000 * 109.47632 * 209.99695 * 16 15 13 39 39 H 1.08999 * 109.47573 * 330.00182 * 16 15 13 40 40 H 1.09000 * 109.47294 * 210.00368 * 17 15 13 41 41 H 1.09009 * 109.46784 * 329.99951 * 17 15 13 42 42 H 0.97005 * 119.99556 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 8 2.0060 -0.6721 1.1689 5 6 3.3231 -1.0102 1.1859 6 6 4.0345 -1.0180 2.3729 7 6 5.3741 -1.3625 2.3711 8 6 6.0049 -1.7004 1.1879 9 6 5.3005 -1.6955 -0.0021 10 6 3.9591 -1.3504 -0.0069 11 7 3.2261 -1.3395 -1.2021 12 6 3.7465 -2.0037 -2.3998 13 6 4.5721 -1.0271 -3.1971 14 8 4.7125 0.1114 -2.8033 15 7 5.1553 -1.4192 -4.3470 16 6 4.9863 -2.7945 -4.8223 17 6 5.9585 -0.4700 -5.1218 18 6 7.3933 -0.5364 -4.6659 19 1 7.6785 -1.2179 -3.8781 20 6 8.3419 0.2727 -5.2545 21 7 7.9946 1.1021 -6.2141 22 14 10.1203 0.1909 -4.6888 23 1 10.6428 -1.1837 -4.8959 24 1 10.9343 1.1530 -5.4743 25 1 10.1976 0.5377 -3.2469 26 6 2.0325 -0.7076 -1.2322 27 8 1.3672 -0.7108 -2.2464 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 3.5446 -0.7555 3.2990 32 1 5.9292 -1.3682 3.2974 33 1 7.0510 -1.9689 1.1933 34 1 5.7952 -1.9593 -0.9252 35 1 4.3679 -2.8494 -2.1052 36 1 2.9150 -2.3584 -3.0087 37 1 4.1057 -2.8521 -5.4622 38 1 5.8676 -3.0940 -5.3895 39 1 4.8595 -3.4609 -3.9691 40 1 5.9014 -0.7247 -6.1801 41 1 5.5752 0.5391 -4.9698 42 1 8.6621 1.6712 -6.6285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034652638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:30 Heat of formation + Delta-G solvation = -59.860755 kcal Electronic energy + Delta-G solvation = -27351.264743 eV Core-core repulsion = 23490.490260 eV Total energy + Delta-G solvation = -3860.774483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68782 -39.22780 -38.76489 -37.57620 -35.63190 -34.80155 -32.68283 -32.23660 -30.32759 -30.02364 -28.58057 -27.37816 -25.79683 -24.29903 -23.39441 -22.91310 -22.12534 -19.50950 -19.33549 -18.69863 -17.45493 -16.99508 -16.57514 -16.49924 -15.88640 -15.48869 -14.99781 -14.84098 -14.76981 -14.50686 -14.24610 -14.09659 -13.84640 -13.32579 -13.04940 -12.75153 -12.65679 -12.43036 -12.34026 -12.24094 -12.00136 -11.92895 -11.71374 -11.27999 -11.24474 -11.20847 -10.95789 -10.67740 -10.60177 -10.21077 -9.94789 -9.70361 -9.09006 -8.69792 -8.47548 -7.85446 -7.73921 -6.08285 -4.13769 1.04599 1.21605 2.20820 2.52118 3.08597 3.23827 3.28308 3.33215 3.36044 3.66925 3.83787 3.94286 4.40369 4.57042 4.60929 4.78998 4.92015 4.98730 5.04568 5.09985 5.21151 5.26359 5.28921 5.35506 5.47777 5.52462 5.55675 5.61545 5.85298 5.86274 5.95726 6.11108 6.12821 6.27457 6.42131 6.56993 6.84716 6.97551 7.28317 7.38404 7.44701 7.71289 7.86902 8.17565 8.28935 8.81804 8.96752 9.51163 10.99892 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.004297 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.027425 B = 6514.212816 C = 7658.747635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.079 3.921 3 H 0.105 0.895 4 O -0.304 6.304 5 C 0.074 3.926 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.107 4.107 9 C -0.113 4.113 10 C 0.109 3.891 11 N -0.531 5.531 12 C 0.087 3.913 13 C 0.489 3.511 14 O -0.528 6.528 15 N -0.598 5.598 16 C 0.080 3.920 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.056 0.944 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.498 3.502 27 O -0.504 6.504 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.308 -8.499 15.336 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.020 3.980 3 H 0.122 0.878 4 O -0.219 6.219 5 C 0.028 3.972 6 C -0.130 4.130 7 C -0.135 4.135 8 C -0.126 4.126 9 C -0.134 4.134 10 C 0.014 3.986 11 N -0.254 5.254 12 C -0.038 4.038 13 C 0.273 3.727 14 O -0.405 6.405 15 N -0.331 5.331 16 C -0.064 4.064 17 C 0.127 3.873 18 C -0.567 4.567 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 C 0.286 3.714 27 O -0.378 6.378 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.730 -7.774 14.877 19.922 hybrid contribution 1.382 -0.004 -0.205 1.397 sum -9.349 -7.778 14.672 19.057 Atomic orbital electron populations 1.21694 0.88984 1.04205 1.04022 1.22626 0.97836 0.96526 0.80995 0.87775 1.86194 1.21640 1.74307 1.39738 1.18549 0.83605 1.02328 0.92730 1.20451 0.93560 1.02804 0.96146 1.20954 0.93658 1.00374 0.98506 1.21015 1.00162 0.99845 0.91580 1.20775 0.91082 1.01843 0.99661 1.18100 0.92809 1.03129 0.84537 1.45253 1.18636 1.52080 1.09462 1.21660 1.00149 0.95410 0.86562 1.20498 0.80933 0.89006 0.82227 1.90693 1.61329 1.19916 1.68560 1.48152 1.49827 1.12398 1.22763 1.21702 1.02107 0.83223 0.99404 1.19314 0.89309 0.88512 0.90126 1.21349 0.92679 1.22560 1.20095 0.92540 1.24935 0.99211 0.94961 0.94923 1.69924 1.34502 1.23906 1.24901 0.86556 0.84152 0.77815 0.78890 1.20199 1.21123 1.20160 1.21438 0.80405 0.78671 0.90887 1.90731 1.55897 1.57959 1.33172 0.91142 0.90286 0.88996 0.84583 0.85044 0.85059 0.84981 0.87211 0.86589 0.93345 0.90310 0.92629 0.94824 0.93906 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.15 37.16 0.34 -0.99 16 2 C 0.08 1.05 3.68 -27.87 -0.10 0.95 16 3 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 4 O -0.30 -4.01 10.09 -19.70 -0.20 -4.21 16 5 C 0.07 1.02 6.44 -39.10 -0.25 0.76 16 6 C -0.11 -1.23 10.00 -39.50 -0.39 -1.63 16 7 C -0.12 -1.19 10.04 -39.54 -0.40 -1.59 16 8 C -0.11 -1.27 10.04 -39.55 -0.40 -1.67 16 9 C -0.11 -1.65 9.13 -39.47 -0.36 -2.01 16 10 C 0.11 1.67 6.38 -83.49 -0.53 1.14 16 11 N -0.53 -8.80 2.21 -114.51 -0.25 -9.05 16 12 C 0.09 1.40 3.81 -5.19 -0.02 1.38 16 13 C 0.49 10.35 7.30 -10.99 -0.08 10.27 16 14 O -0.53 -13.62 16.01 5.56 0.09 -13.53 16 15 N -0.60 -12.69 2.86 -182.95 -0.52 -13.21 16 16 C 0.08 1.22 10.24 59.84 0.61 1.84 16 17 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 18 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 19 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 22 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.50 8.29 7.38 -10.84 -0.08 8.21 16 27 O -0.50 -9.40 15.81 5.55 0.09 -9.31 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.93 7.86 -51.93 -0.41 0.52 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 34 H 0.13 2.04 6.48 -52.48 -0.34 1.70 16 35 H 0.11 1.42 6.32 -51.93 -0.33 1.09 16 36 H 0.12 1.72 7.41 -51.93 -0.39 1.33 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 39 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 40 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.04 1.29 7.42 -51.92 -0.39 0.90 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -35.67 355.64 -7.36 -43.02 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.52 Total: 0.53 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -2.11 Total: 9.66 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.04 Total: -48.10 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.02 Total: -27.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.67 -7.36 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034652638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.837 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds