Wall clock time and date at job start Tue Mar 31 2020 12:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.44119 * 2 1 4 4 O 1.42993 * 109.44274 * 119.89733 * 2 1 3 5 5 C 1.35987 * 116.70944 * 166.44757 * 4 2 1 6 6 C 1.38389 * 120.66431 * 147.17659 * 5 4 2 7 7 C 1.38313 * 119.87823 * 180.10126 * 6 5 4 8 8 C 1.38281 * 120.25231 * 359.94303 * 7 6 5 9 9 C 1.38288 * 120.20352 * 0.02562 * 8 7 6 10 10 C 1.38503 * 119.81258 * 0.02562 * 9 8 7 11 11 N 1.40212 * 120.74116 * 180.02562 * 10 9 8 12 12 C 1.46504 * 120.50904 * 15.48130 * 11 10 9 13 13 C 1.50702 * 109.47028 * 269.97381 * 12 11 10 14 14 O 1.21278 * 119.99753 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99661 * 179.97438 * 13 12 11 16 16 C 1.46493 * 120.00464 * 0.02562 * 15 13 12 17 17 C 1.46505 * 119.99762 * 180.02562 * 15 13 12 18 18 C 1.50700 * 109.47486 * 89.99997 * 17 15 13 19 19 H 1.08000 * 119.99483 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00332 * 180.02562 * 18 17 15 21 21 N 1.31508 * 119.99605 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99965 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46859 * 59.99944 * 22 20 18 24 24 H 1.48502 * 109.46773 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47260 * 300.00229 * 22 20 18 26 26 C 1.35091 * 118.98313 * 195.45684 * 11 10 9 27 27 O 1.21293 * 120.13467 * 181.65110 * 26 11 10 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.93774 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.93603 * 1 2 3 31 31 H 1.08002 * 120.05865 * 0.09875 * 6 5 4 32 32 H 1.07992 * 119.86978 * 179.97438 * 7 6 5 33 33 H 1.08005 * 119.89067 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.08760 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47013 * 29.97739 * 12 11 10 36 36 H 1.08997 * 109.47112 * 149.97664 * 12 11 10 37 37 H 1.08999 * 109.46885 * 90.00020 * 16 15 13 38 38 H 1.09000 * 109.47632 * 209.99695 * 16 15 13 39 39 H 1.08999 * 109.47573 * 330.00182 * 16 15 13 40 40 H 1.09000 * 109.47294 * 210.00368 * 17 15 13 41 41 H 1.09009 * 109.46784 * 329.99951 * 17 15 13 42 42 H 0.97005 * 119.99556 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 8 2.0060 -0.6721 1.1689 5 6 3.3231 -1.0102 1.1859 6 6 4.0345 -1.0180 2.3729 7 6 5.3741 -1.3625 2.3711 8 6 6.0049 -1.7004 1.1879 9 6 5.3005 -1.6955 -0.0021 10 6 3.9591 -1.3504 -0.0069 11 7 3.2261 -1.3395 -1.2021 12 6 3.7465 -2.0037 -2.3998 13 6 4.5721 -1.0271 -3.1971 14 8 4.7125 0.1114 -2.8033 15 7 5.1553 -1.4192 -4.3470 16 6 4.9863 -2.7945 -4.8223 17 6 5.9585 -0.4700 -5.1218 18 6 7.3933 -0.5364 -4.6659 19 1 7.6785 -1.2179 -3.8781 20 6 8.3419 0.2727 -5.2545 21 7 7.9946 1.1021 -6.2141 22 14 10.1203 0.1909 -4.6888 23 1 10.6428 -1.1837 -4.8959 24 1 10.9343 1.1530 -5.4743 25 1 10.1976 0.5377 -3.2469 26 6 2.0325 -0.7076 -1.2322 27 8 1.3672 -0.7108 -2.2464 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 3.5446 -0.7555 3.2990 32 1 5.9292 -1.3682 3.2974 33 1 7.0510 -1.9689 1.1933 34 1 5.7952 -1.9593 -0.9252 35 1 4.3679 -2.8494 -2.1052 36 1 2.9150 -2.3584 -3.0087 37 1 4.1057 -2.8521 -5.4622 38 1 5.8676 -3.0940 -5.3895 39 1 4.8595 -3.4609 -3.9691 40 1 5.9014 -0.7247 -6.1801 41 1 5.5752 0.5391 -4.9698 42 1 8.6621 1.6712 -6.6285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034652638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:30 Heat of formation + Delta-G solvation = -83.664640 kcal Electronic energy + Delta-G solvation = -27352.296957 eV Core-core repulsion = 23490.490260 eV Total energy + Delta-G solvation = -3861.806697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.81287 -40.73015 -39.99669 -38.65585 -36.95046 -36.48087 -34.78517 -33.19297 -31.45207 -31.24065 -29.96826 -28.88281 -27.35835 -25.66232 -24.48557 -24.39029 -23.33757 -20.70815 -20.46558 -20.15087 -18.77078 -18.58455 -18.16455 -17.95106 -17.32372 -16.65097 -16.59122 -16.37751 -15.87266 -15.73469 -15.53583 -15.43554 -15.02576 -14.48571 -14.44037 -14.22582 -13.89121 -13.84957 -13.54078 -13.36133 -13.23273 -13.17542 -13.13721 -12.85942 -12.79934 -12.57529 -12.24762 -12.22946 -12.19144 -11.86012 -11.76506 -11.14360 -10.72977 -10.67248 -9.68720 -9.53794 -8.95009 -8.25408 -6.40993 0.03054 0.25702 1.02405 1.35358 1.37610 1.40005 1.47304 1.62049 2.05422 2.26885 2.41187 2.73492 2.79938 3.04686 3.52835 3.56148 3.66600 3.79367 3.88403 3.96553 4.04242 4.24228 4.30661 4.34872 4.46459 4.57811 4.64151 4.71432 4.76498 4.87746 4.89756 4.95317 5.09040 5.14920 5.21181 5.25159 5.48467 5.50656 5.65743 5.75095 5.77654 6.00191 6.23253 6.46242 6.60583 6.68373 7.19266 7.34171 8.82206 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.004297 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.027425 B = 6514.212816 C = 7658.747635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.081 3.919 3 H 0.105 0.895 4 O -0.299 6.299 5 C 0.058 3.942 6 C -0.104 4.104 7 C -0.101 4.101 8 C -0.111 4.111 9 C -0.133 4.133 10 C 0.079 3.921 11 N -0.538 5.538 12 C 0.100 3.900 13 C 0.483 3.517 14 O -0.586 6.586 15 N -0.605 5.605 16 C 0.073 3.927 17 C 0.261 3.739 18 C -0.542 4.542 19 H 0.058 0.942 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.970 3.030 23 H -0.257 1.257 24 H -0.280 1.280 25 H -0.275 1.275 26 C 0.484 3.516 27 O -0.536 6.536 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.025 0.975 41 H -0.009 1.009 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 -10.206 18.218 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.021 3.979 3 H 0.123 0.877 4 O -0.214 6.214 5 C 0.012 3.988 6 C -0.123 4.123 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.154 4.154 10 C -0.015 4.015 11 N -0.261 5.261 12 C -0.026 4.026 13 C 0.270 3.730 14 O -0.466 6.466 15 N -0.336 5.336 16 C -0.069 4.069 17 C 0.140 3.860 18 C -0.580 4.580 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.570 5.570 22 Si 0.794 3.206 23 H -0.181 1.181 24 H -0.205 1.205 25 H -0.201 1.201 26 C 0.274 3.726 27 O -0.413 6.413 28 H 0.089 0.911 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.184 0.816 32 H 0.189 0.811 33 H 0.169 0.831 34 H 0.133 0.867 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.042 0.958 41 H 0.009 0.991 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.002 -9.546 17.777 22.521 hybrid contribution 1.168 0.534 -1.059 1.665 sum -8.834 -9.012 16.717 20.946 Atomic orbital electron populations 1.21716 0.86646 1.04639 1.05178 1.22761 0.99539 0.95880 0.79690 0.87712 1.86198 1.21643 1.74335 1.39238 1.18908 0.83949 1.02822 0.93141 1.20897 0.93873 1.01325 0.96207 1.21420 0.93408 0.97790 0.99320 1.21340 1.01068 0.99263 0.91237 1.20824 0.91142 1.03224 1.00201 1.18380 0.93360 1.05155 0.84603 1.45402 1.18749 1.52060 1.09906 1.21626 1.00089 0.94503 0.86333 1.21418 0.80495 0.89161 0.81965 1.90650 1.63402 1.22629 1.69965 1.48165 1.48998 1.13922 1.22556 1.22034 1.02927 0.80477 1.01481 1.18775 0.89534 0.87437 0.90297 1.21625 0.93516 1.22748 1.20108 0.92348 1.25913 1.04159 0.94332 0.94840 1.70063 1.36160 1.24696 1.26110 0.85428 0.78229 0.78814 0.78132 1.18110 1.20547 1.20075 1.22194 0.80342 0.78378 0.91690 1.90695 1.56878 1.59249 1.34459 0.91065 0.87520 0.89353 0.81644 0.81099 0.83112 0.86734 0.83847 0.85205 0.91244 0.90586 0.88535 0.95751 0.99078 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 9.15 71.98 0.66 -1.74 16 2 C 0.08 2.11 3.68 29.85 0.11 2.22 16 3 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 4 O -0.30 -7.50 10.09 -93.40 -0.94 -8.45 16 5 C 0.06 1.50 6.44 22.58 0.15 1.65 16 6 C -0.10 -1.99 10.00 22.32 0.22 -1.76 16 7 C -0.10 -1.69 10.04 22.30 0.22 -1.47 16 8 C -0.11 -2.37 10.04 22.29 0.22 -2.15 16 9 C -0.13 -3.81 9.13 22.34 0.20 -3.61 16 10 C 0.08 2.39 6.38 38.14 0.24 2.63 16 11 N -0.54 -18.03 2.21 -634.40 -1.40 -19.43 16 12 C 0.10 3.18 3.81 85.63 0.33 3.51 16 13 C 0.48 21.12 7.30 87.66 0.64 21.76 16 14 O -0.59 -31.95 16.01 -3.02 -0.05 -32.00 16 15 N -0.60 -26.32 2.86 -851.14 -2.43 -28.75 16 16 C 0.07 2.16 10.24 127.77 1.31 3.47 16 17 C 0.26 14.43 5.16 85.63 0.44 14.87 16 18 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 19 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 20 C 0.01 0.37 5.46 84.66 0.46 0.84 16 21 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 22 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 C 0.48 16.46 7.38 87.61 0.65 17.11 16 27 O -0.54 -20.63 15.81 -3.07 -0.05 -20.68 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.77 7.86 -2.39 -0.02 1.75 16 31 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.11 3.58 6.48 -2.91 -0.02 3.56 16 35 H 0.14 3.52 6.32 -2.39 -0.02 3.50 16 36 H 0.13 3.77 7.41 -2.39 -0.02 3.75 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 39 H 0.10 2.06 6.44 -2.39 -0.02 2.05 16 40 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 41 H -0.01 -0.58 7.42 -2.38 -0.02 -0.60 16 42 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -82.65 355.64 4.58 -78.07 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.04 Total: 15.03 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: 6.10 Total: 26.40 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.55 Total: -104.87 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -1.04 Total: -61.13 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -82.65 4.58 -78.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034652638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.595 kcal (2) G-P(sol) polarization free energy of solvation -82.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds