Wall clock time and date at job start Tue Mar 31 2020 12:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.44541 * 2 1 4 4 O 1.42997 * 109.42244 * 240.07975 * 2 1 3 5 5 C 1.35987 * 116.71152 * 286.36933 * 4 2 1 6 6 C 1.38395 * 120.66886 * 147.17111 * 5 4 2 7 7 C 1.38319 * 119.87200 * 180.10259 * 6 5 4 8 8 C 1.38274 * 120.26374 * 0.04503 * 7 6 5 9 9 C 1.38298 * 120.19587 * 359.90818 * 8 7 6 10 10 C 1.38503 * 119.81287 * 0.05076 * 9 8 7 11 11 N 1.40212 * 120.73574 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.50974 * 15.48894 * 11 10 9 13 13 C 1.50695 * 109.47517 * 89.99917 * 12 11 10 14 14 O 1.21286 * 119.99788 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00364 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99721 * 359.97438 * 15 13 12 17 17 C 1.46498 * 120.00148 * 179.97438 * 15 13 12 18 18 C 1.50698 * 109.47401 * 89.99656 * 17 15 13 19 19 H 1.08003 * 120.00042 * 0.02562 * 18 17 15 20 20 C 1.37874 * 120.00383 * 180.02562 * 18 17 15 21 21 N 1.31522 * 119.99950 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00300 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47276 * 90.00023 * 22 20 18 24 24 H 1.48503 * 109.47088 * 209.99881 * 22 20 18 25 25 H 1.48491 * 109.47186 * 329.99824 * 22 20 18 26 26 C 1.35094 * 118.98115 * 195.50645 * 11 10 9 27 27 O 1.21287 * 120.13930 * 181.68788 * 26 11 10 28 28 H 1.08992 * 109.47711 * 300.07045 * 1 2 3 29 29 H 1.08998 * 109.47130 * 60.07066 * 1 2 3 30 30 H 1.09002 * 109.46809 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.06450 * 359.83504 * 6 5 4 32 32 H 1.08001 * 119.86538 * 179.97438 * 7 6 5 33 33 H 1.07990 * 119.90387 * 179.97438 * 8 7 6 34 34 H 1.07996 * 120.09039 * 180.02562 * 9 8 7 35 35 H 1.09008 * 109.47070 * 209.99869 * 12 11 10 36 36 H 1.08997 * 109.47008 * 329.99682 * 12 11 10 37 37 H 1.08995 * 109.47077 * 90.00478 * 16 15 13 38 38 H 1.09009 * 109.47003 * 210.00276 * 16 15 13 39 39 H 1.09001 * 109.47158 * 330.00103 * 16 15 13 40 40 H 1.09002 * 109.46947 * 209.99329 * 17 15 13 41 41 H 1.08992 * 109.47185 * 329.99469 * 17 15 13 42 42 H 0.97002 * 119.99866 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0055 -0.6727 -1.1689 5 6 1.8859 -2.0272 -1.1858 6 6 1.6565 -2.7008 -2.3728 7 6 1.5354 -4.0786 -2.3707 8 6 1.6418 -4.7858 -1.1872 9 6 1.8719 -4.1197 0.0027 10 6 1.9949 -2.7401 0.0070 11 7 2.2289 -2.0453 1.2022 12 6 2.6804 -2.7572 2.4002 13 6 4.1867 -2.7933 2.4255 14 8 4.8208 -2.2756 1.5305 15 7 4.8293 -3.4016 3.4420 16 6 4.0634 -4.0274 4.5228 17 6 6.2937 -3.4372 3.4663 18 6 6.8136 -2.2253 4.1957 19 1 6.1224 -1.5013 4.6012 20 6 8.1717 -2.0409 4.3456 21 7 9.0135 -2.9228 3.8523 22 14 8.8162 -0.5384 5.2492 23 1 8.9503 -0.8499 6.6950 24 1 10.1429 -0.1612 4.6990 25 1 7.8678 0.5904 5.0720 26 6 2.0313 -0.7092 1.2320 27 8 2.2566 -0.0828 2.2458 28 1 -0.3634 0.5149 0.8893 29 1 -0.3633 0.5127 -0.8906 30 1 -0.3633 -1.0277 0.0005 31 1 1.5678 -2.1512 -3.2984 32 1 1.3560 -4.6042 -3.2970 33 1 1.5459 -5.8614 -1.1923 34 1 1.9551 -4.6737 0.9260 35 1 2.3144 -2.2422 3.2885 36 1 2.2928 -3.7759 2.3852 37 1 3.8607 -5.0679 4.2692 38 1 4.6385 -3.9843 5.4479 39 1 3.1213 -3.4956 4.6556 40 1 6.6268 -4.3400 3.9782 41 1 6.6740 -3.4373 2.4449 42 1 9.9690 -2.7932 3.9581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034652640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:34 Heat of formation + Delta-G solvation = -57.578566 kcal Electronic energy + Delta-G solvation = -27388.676756 eV Core-core repulsion = 23528.001236 eV Total energy + Delta-G solvation = -3860.675520 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76300 -39.21737 -38.69007 -37.63684 -35.60646 -34.76487 -32.63239 -32.14824 -30.45813 -30.07841 -28.58593 -27.31647 -25.74947 -24.44047 -23.66359 -23.01183 -22.06364 -19.38979 -19.31321 -18.66490 -17.46999 -16.74286 -16.52287 -16.28227 -15.72491 -15.54460 -15.47539 -15.04425 -14.78477 -14.47466 -14.37142 -14.11663 -13.78848 -13.30896 -13.10908 -12.74879 -12.68452 -12.60223 -12.31536 -12.20669 -12.11071 -11.89733 -11.70439 -11.32886 -11.26469 -11.19897 -10.88710 -10.68715 -10.57241 -10.14848 -9.89909 -9.62566 -9.07485 -8.74522 -8.42364 -7.84687 -7.69506 -6.03435 -4.07882 1.01671 1.15966 2.27687 2.40908 3.19884 3.28205 3.32101 3.38647 3.45737 3.56707 3.89693 3.94787 4.46752 4.49296 4.56678 4.69011 4.82083 4.92352 5.03312 5.07776 5.13432 5.20839 5.30432 5.31448 5.32749 5.46615 5.50854 5.61604 5.68900 5.84220 5.86194 6.03724 6.15103 6.25938 6.33815 6.52805 6.83543 7.00148 7.27622 7.41279 7.49857 7.73138 7.93026 8.23407 8.33009 8.88307 9.02992 9.57208 11.04746 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.003956 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.663121 B = 7076.244112 C = 7676.842283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 H 0.150 0.850 4 O -0.298 6.298 5 C 0.083 3.917 6 C -0.110 4.110 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.128 4.128 10 C 0.114 3.886 11 N -0.531 5.531 12 C 0.087 3.913 13 C 0.490 3.510 14 O -0.526 6.526 15 N -0.600 5.600 16 C 0.080 3.920 17 C 0.247 3.753 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.497 3.503 27 O -0.500 6.500 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.652 -3.468 -9.205 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.023 3.977 3 H 0.167 0.833 4 O -0.212 6.212 5 C 0.036 3.964 6 C -0.129 4.129 7 C -0.136 4.136 8 C -0.128 4.128 9 C -0.148 4.148 10 C 0.019 3.981 11 N -0.254 5.254 12 C -0.038 4.038 13 C 0.274 3.726 14 O -0.402 6.402 15 N -0.333 5.333 16 C -0.064 4.064 17 C 0.128 3.872 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.198 1.198 26 C 0.285 3.715 27 O -0.373 6.373 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.873 -2.701 -9.181 22.962 hybrid contribution 0.606 0.656 0.949 1.303 sum -20.267 -2.046 -8.231 21.971 Atomic orbital electron populations 1.22334 0.92558 1.03830 1.04474 1.22864 0.96229 0.97653 0.80942 0.83296 1.86280 1.79144 1.16177 1.39612 1.18582 1.02513 0.82644 0.92647 1.20498 1.01845 0.94327 0.96224 1.20937 1.01260 0.92958 0.98452 1.20940 1.00188 1.00069 0.91642 1.20680 1.03190 0.91294 0.99648 1.18084 1.02369 0.92691 0.84953 1.45186 1.62840 1.07407 1.09984 1.21671 0.94954 0.98891 0.88286 1.20456 0.88983 0.79941 0.83200 1.90709 1.67725 1.44607 1.37117 1.48143 1.09675 1.54257 1.21202 1.21694 0.96045 0.96493 0.92178 1.19305 0.71903 0.97191 0.98816 1.21436 0.91821 1.07629 1.35642 0.92448 1.24927 0.96672 0.96692 0.95762 1.69936 1.02632 1.35401 1.45481 0.86492 0.78310 0.83118 0.79533 1.20576 1.21035 1.19840 1.21373 0.77652 0.81610 0.90875 1.90783 1.48594 1.64549 1.33397 0.89951 0.89713 0.91571 0.84548 0.85084 0.85186 0.85125 0.86571 0.87309 0.93466 0.90352 0.92605 0.94813 0.93880 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.30 37.16 0.35 -1.25 16 2 C 0.08 1.07 3.81 -27.87 -0.11 0.96 16 3 H 0.15 1.72 8.14 -51.93 -0.42 1.30 16 4 O -0.30 -4.25 10.18 -19.70 -0.20 -4.45 16 5 C 0.08 1.14 5.85 -39.09 -0.23 0.92 16 6 C -0.11 -1.20 10.00 -39.49 -0.39 -1.60 16 7 C -0.12 -1.09 10.04 -39.54 -0.40 -1.49 16 8 C -0.11 -1.08 10.04 -39.55 -0.40 -1.47 16 9 C -0.13 -1.53 9.36 -39.46 -0.37 -1.90 16 10 C 0.11 1.66 6.39 -83.49 -0.53 1.12 16 11 N -0.53 -8.68 2.21 -114.51 -0.25 -8.93 16 12 C 0.09 1.39 4.23 -5.20 -0.02 1.37 16 13 C 0.49 10.72 7.74 -10.99 -0.09 10.63 16 14 O -0.53 -14.17 16.01 5.55 0.09 -14.08 16 15 N -0.60 -13.02 2.86 -182.96 -0.52 -13.54 16 16 C 0.08 1.24 10.24 59.85 0.61 1.85 16 17 C 0.25 6.63 5.16 -5.20 -0.03 6.61 16 18 C -0.53 -15.51 9.39 -34.44 -0.32 -15.84 16 19 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 20 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 22 Si 0.90 22.69 29.54 -169.99 -5.02 17.67 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.50 8.43 6.92 -10.82 -0.07 8.35 16 27 O -0.50 -10.02 16.77 5.55 0.09 -9.92 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.62 7.81 -51.93 -0.41 0.21 16 31 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.36 6.12 -52.49 -0.32 1.04 16 35 H 0.12 1.76 6.75 -51.92 -0.35 1.41 16 36 H 0.11 1.28 5.93 -51.93 -0.31 0.98 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.26 8.07 -51.92 -0.42 0.84 16 39 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 40 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 41 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -38.44 355.56 -7.26 -45.71 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.45 Total: -1.30 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -2.10 Total: 9.98 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.04 Total: -48.96 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.02 Total: -28.46 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.44 -7.26 -45.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034652640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.869 kcal (2) G-P(sol) polarization free energy of solvation -38.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds