Wall clock time and date at job start Tue Mar 31 2020 12:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 115.55464 * 2 1 4 4 C 1.53005 * 117.49686 * 145.66955 * 2 1 3 5 5 C 1.53001 * 117.49753 * 214.32895 * 2 1 3 6 6 H 1.09001 * 117.49905 * 359.97438 * 5 2 1 7 7 C 1.53003 * 117.49997 * 144.99778 * 5 2 1 8 8 N 1.46500 * 109.47207 * 184.99763 * 7 5 2 9 9 C 1.34775 * 119.99825 * 179.97438 * 8 7 5 10 10 O 1.21357 * 120.00227 * 0.02562 * 9 8 7 11 11 C 1.49356 * 119.99704 * 180.02562 * 9 8 7 12 12 O 1.21370 * 120.00176 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99885 * 180.02562 * 11 9 8 14 14 C 1.39716 * 119.99946 * 174.79228 * 13 11 9 15 15 C 1.39019 * 120.04530 * 146.38971 * 14 13 11 16 16 C 1.38136 * 120.06561 * 179.97438 * 15 14 13 17 17 C 1.38181 * 120.14253 * 359.97438 * 16 15 14 18 18 C 1.38919 * 120.08320 * 0.02562 * 17 16 15 19 19 O 1.35747 * 120.02864 * 179.97438 * 18 17 16 20 20 C 1.34834 * 117.00399 * 5.91016 * 19 18 17 21 21 H 1.08005 * 119.99761 * 5.41069 * 20 19 18 22 22 C 1.38652 * 120.00127 * 185.40062 * 20 19 18 23 23 N 1.31559 * 119.99630 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99974 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46943 * 89.99818 * 24 22 20 26 26 H 1.48499 * 109.46756 * 209.99399 * 24 22 20 27 27 H 1.48492 * 109.47391 * 329.99837 * 24 22 20 28 28 C 1.38755 * 119.93542 * 359.70346 * 18 17 16 29 29 H 1.08996 * 109.46779 * 205.58333 * 1 2 3 30 30 H 1.09005 * 109.46545 * 85.58280 * 1 2 3 31 31 H 1.08995 * 109.46642 * 325.58781 * 1 2 3 32 32 H 1.09000 * 117.49856 * 214.97440 * 4 2 1 33 33 H 1.08999 * 117.50220 * 0.02562 * 4 2 1 34 34 H 1.08995 * 109.46945 * 305.00134 * 7 5 2 35 35 H 1.09001 * 109.46877 * 65.00157 * 7 5 2 36 36 H 0.97000 * 120.00171 * 0.02562 * 8 7 5 37 37 H 0.97002 * 120.00011 * 354.78700 * 13 11 9 38 38 H 1.08004 * 119.96628 * 359.97438 * 15 14 13 39 39 H 1.08001 * 119.93189 * 180.02562 * 16 15 14 40 40 H 1.08004 * 119.95707 * 179.97438 * 17 16 15 41 41 H 0.97000 * 119.99719 * 180.02562 * 23 22 20 42 42 H 1.08001 * 120.06774 * 180.29435 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 2.2364 -1.1208 -0.7654 6 1 1.6112 -1.8583 -1.2685 7 6 3.5487 -0.7754 -1.4722 8 7 4.0082 -1.9339 -2.2422 9 6 5.1517 -1.8608 -2.9518 10 8 5.8010 -0.8355 -2.9526 11 6 5.6199 -3.0417 -3.7374 12 8 4.9703 -4.0670 -3.7370 13 7 6.7637 -2.9688 -4.4466 14 6 7.2586 -4.1044 -5.0927 15 6 7.9341 -3.9788 -6.3012 16 6 8.4241 -5.1013 -6.9401 17 6 8.2452 -6.3519 -6.3803 18 6 7.5711 -6.4844 -5.1728 19 8 7.3956 -7.7136 -4.6242 20 6 8.0037 -8.7498 -5.2362 21 1 8.6679 -8.5708 -6.0688 22 6 7.7765 -10.0449 -4.7964 23 7 8.3703 -11.0558 -5.3933 24 14 6.6275 -10.3544 -3.3566 25 1 5.2438 -10.5477 -3.8601 26 1 7.0638 -11.5728 -2.6282 27 1 6.6613 -9.1891 -2.4369 28 6 7.0825 -5.3586 -4.5254 29 1 -0.3633 -0.9269 0.4438 30 1 -0.3632 0.0792 -1.0247 31 1 -0.3632 0.8478 0.5808 32 1 3.1716 -0.8748 1.2686 33 1 1.6112 -1.8583 1.2686 34 1 3.3884 0.0674 -2.1445 35 1 4.3021 -0.5103 -0.7304 36 1 3.4891 -2.7533 -2.2420 37 1 7.2432 -2.1278 -4.5086 38 1 8.0758 -3.0027 -6.7411 39 1 8.9488 -5.0012 -7.8787 40 1 8.6292 -7.2276 -6.8826 41 1 8.2112 -11.9620 -5.0860 42 1 6.5623 -5.4587 -3.5843 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042054390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:21 Heat of formation + Delta-G solvation = -41.761176 kcal Electronic energy + Delta-G solvation = -25109.927319 eV Core-core repulsion = 21249.937693 eV Total energy + Delta-G solvation = -3859.989626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98551 -39.54150 -38.72780 -38.19559 -36.80001 -35.06275 -34.04196 -32.39420 -29.92848 -29.65434 -28.87032 -27.28733 -25.30313 -24.43091 -22.26888 -21.66412 -21.36251 -21.02226 -20.11314 -18.75859 -18.09703 -17.46791 -16.84387 -16.25370 -16.02348 -15.50320 -15.28750 -15.13683 -14.87628 -14.45078 -14.33268 -13.93042 -13.83618 -13.70361 -13.58366 -13.23005 -12.91807 -12.67800 -12.46252 -12.31337 -11.91572 -11.84515 -11.80298 -11.73989 -11.16611 -11.00816 -10.86304 -10.58118 -10.44620 -10.22918 -9.97934 -9.69493 -9.50363 -9.35508 -8.88221 -7.90728 -7.37928 -6.42765 -4.09432 1.14711 1.99891 2.17037 2.23586 3.12517 3.19829 3.23108 3.27864 3.43019 3.52556 4.08497 4.24390 4.26185 4.32645 4.44258 4.47775 4.72264 4.84868 4.88692 5.05347 5.07822 5.25735 5.32046 5.35193 5.38029 5.50656 5.57721 5.65575 5.66463 5.81847 5.93601 5.96538 6.03587 6.16777 6.34757 6.56747 6.81557 6.89520 7.05663 7.25897 7.33842 7.48342 7.63148 7.76943 7.93463 8.02478 8.92466 9.54505 10.64531 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.002698 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.214277 B =10375.550933 C =12143.203099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.171 4.171 5 C -0.171 4.171 6 H 0.114 0.886 7 C 0.150 3.850 8 N -0.698 5.698 9 C 0.513 3.487 10 O -0.521 6.521 11 C 0.500 3.500 12 O -0.492 6.492 13 N -0.637 5.637 14 C 0.169 3.831 15 C -0.221 4.221 16 C -0.058 4.058 17 C -0.227 4.227 18 C 0.173 3.827 19 O -0.212 6.212 20 C -0.389 4.389 21 H 0.108 0.892 22 C 0.064 3.936 23 N -0.878 5.878 24 Si 0.904 3.096 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.186 4.186 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.416 0.584 37 H 0.419 0.581 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.280 0.720 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 21.600 8.057 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 H 0.126 0.874 4 C -0.208 4.208 5 C -0.190 4.190 6 H 0.132 0.868 7 C 0.027 3.973 8 N -0.352 5.352 9 C 0.293 3.707 10 O -0.397 6.397 11 C 0.281 3.719 12 O -0.365 6.365 13 N -0.283 5.283 14 C 0.076 3.924 15 C -0.242 4.242 16 C -0.077 4.077 17 C -0.247 4.247 18 C 0.120 3.880 19 O -0.117 6.117 20 C -0.464 4.464 21 H 0.125 0.875 22 C -0.139 4.139 23 N -0.515 5.515 24 Si 0.730 3.270 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.207 4.207 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.252 0.748 37 H 0.256 0.744 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.090 0.910 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.196 21.294 8.308 25.452 hybrid contribution -0.370 -0.315 0.392 0.624 sum -11.566 20.979 8.700 25.487 Atomic orbital electron populations 1.21388 0.92448 1.02205 1.02139 1.22399 0.95543 0.94573 1.03594 0.87443 1.23305 1.02892 1.01330 0.93240 1.22588 0.98315 1.03394 0.94683 0.86788 1.21011 0.93847 0.87837 0.94630 1.45734 1.23961 1.17711 1.47792 1.20068 0.81848 0.88157 0.80609 1.90763 1.55084 1.31026 1.62842 1.20097 0.82056 0.88485 0.81224 1.90852 1.54222 1.30753 1.60681 1.43027 1.23480 1.13063 1.48759 1.17126 0.97808 0.85149 0.92277 1.20370 1.09114 0.98861 0.95828 1.20586 0.97224 0.91603 0.98298 1.21346 1.06960 0.98404 0.97980 1.18811 0.92632 0.85607 0.90925 1.83597 1.65167 1.12648 1.50267 1.20778 1.25210 0.83425 1.17027 0.87503 1.24465 0.97309 0.93762 0.98397 1.69647 1.42078 0.99310 1.40477 0.86189 0.80543 0.78250 0.82032 1.19813 1.20763 1.18273 1.19990 1.08933 0.89284 1.02528 0.92357 0.91982 0.91915 0.88405 0.88363 0.90425 0.90654 0.74760 0.74408 0.86818 0.86463 0.84631 0.91014 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.19 37.16 0.38 -0.23 16 2 C -0.14 -0.79 6.12 -90.62 -0.56 -1.34 16 3 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.17 -1.01 9.83 -26.69 -0.26 -1.27 16 5 C -0.17 -1.09 5.57 -90.58 -0.50 -1.59 16 6 H 0.11 0.71 8.04 -51.93 -0.42 0.29 16 7 C 0.15 1.19 5.96 -4.04 -0.02 1.16 16 8 N -0.70 -6.96 5.55 -60.76 -0.34 -7.30 16 9 C 0.51 6.49 7.89 -11.63 -0.09 6.40 16 10 O -0.52 -7.30 16.48 5.49 0.09 -7.21 16 11 C 0.50 7.47 7.62 -11.63 -0.09 7.39 16 12 O -0.49 -8.72 14.20 5.48 0.08 -8.64 16 13 N -0.64 -9.32 5.32 -10.31 -0.05 -9.37 16 14 C 0.17 3.00 6.26 -83.78 -0.52 2.48 16 15 C -0.22 -3.61 9.96 -39.33 -0.39 -4.00 16 16 C -0.06 -1.02 10.03 -39.64 -0.40 -1.42 16 17 C -0.23 -4.84 9.13 -39.35 -0.36 -5.20 16 18 C 0.17 4.09 6.64 -39.14 -0.26 3.83 16 19 O -0.21 -5.70 8.58 0.05 0.00 -5.70 16 20 C -0.39 -10.97 9.90 30.89 0.31 -10.67 16 21 H 0.11 3.04 5.53 -52.48 -0.29 2.75 16 22 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 23 N -0.88 -25.29 13.96 55.48 0.77 -24.52 16 24 Si 0.90 21.96 28.62 -169.99 -4.86 17.10 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.19 -3.94 8.60 -39.19 -0.34 -4.28 16 29 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.56 8.03 -51.93 -0.42 0.15 16 33 H 0.10 0.54 8.05 -51.93 -0.42 0.13 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 36 H 0.42 3.85 7.87 -40.82 -0.32 3.53 16 37 H 0.42 5.00 8.30 -40.82 -0.34 4.67 16 38 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.14 3.00 5.71 -52.48 -0.30 2.70 16 41 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.13 2.80 6.45 -52.49 -0.34 2.46 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -31.83 363.97 -7.37 -39.20 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.33 Total: 7.99 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.21 Total: -7.03 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.38 Total: -41.18 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.17 Total: -21.55 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.86 Total: 17.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.83 -7.37 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042054390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.565 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds