Wall clock time and date at job start Tue Mar 31 2020 12:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 115.55464 * 2 1 4 4 C 1.53005 * 117.49686 * 145.66955 * 2 1 3 5 5 C 1.53001 * 117.49753 * 214.32895 * 2 1 3 6 6 H 1.09001 * 117.49905 * 359.97438 * 5 2 1 7 7 C 1.53003 * 117.49997 * 144.99778 * 5 2 1 8 8 N 1.46500 * 109.47207 * 184.99763 * 7 5 2 9 9 C 1.34775 * 119.99825 * 179.97438 * 8 7 5 10 10 O 1.21357 * 120.00227 * 0.02562 * 9 8 7 11 11 C 1.49356 * 119.99704 * 180.02562 * 9 8 7 12 12 O 1.21370 * 120.00176 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99885 * 180.02562 * 11 9 8 14 14 C 1.39716 * 119.99946 * 174.79228 * 13 11 9 15 15 C 1.39019 * 120.04530 * 146.38971 * 14 13 11 16 16 C 1.38136 * 120.06561 * 179.97438 * 15 14 13 17 17 C 1.38181 * 120.14253 * 359.97438 * 16 15 14 18 18 C 1.38919 * 120.08320 * 0.02562 * 17 16 15 19 19 O 1.35747 * 120.02864 * 179.97438 * 18 17 16 20 20 C 1.34834 * 117.00399 * 5.91016 * 19 18 17 21 21 H 1.08005 * 119.99761 * 5.41069 * 20 19 18 22 22 C 1.38652 * 120.00127 * 185.40062 * 20 19 18 23 23 N 1.31559 * 119.99630 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99974 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46943 * 89.99818 * 24 22 20 26 26 H 1.48499 * 109.46756 * 209.99399 * 24 22 20 27 27 H 1.48492 * 109.47391 * 329.99837 * 24 22 20 28 28 C 1.38755 * 119.93542 * 359.70346 * 18 17 16 29 29 H 1.08996 * 109.46779 * 205.58333 * 1 2 3 30 30 H 1.09005 * 109.46545 * 85.58280 * 1 2 3 31 31 H 1.08995 * 109.46642 * 325.58781 * 1 2 3 32 32 H 1.09000 * 117.49856 * 214.97440 * 4 2 1 33 33 H 1.08999 * 117.50220 * 0.02562 * 4 2 1 34 34 H 1.08995 * 109.46945 * 305.00134 * 7 5 2 35 35 H 1.09001 * 109.46877 * 65.00157 * 7 5 2 36 36 H 0.97000 * 120.00171 * 0.02562 * 8 7 5 37 37 H 0.97002 * 120.00011 * 354.78700 * 13 11 9 38 38 H 1.08004 * 119.96628 * 359.97438 * 15 14 13 39 39 H 1.08001 * 119.93189 * 180.02562 * 16 15 14 40 40 H 1.08004 * 119.95707 * 179.97438 * 17 16 15 41 41 H 0.97000 * 119.99719 * 180.02562 * 23 22 20 42 42 H 1.08001 * 120.06774 * 180.29435 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 2.2364 -1.1208 -0.7654 6 1 1.6112 -1.8583 -1.2685 7 6 3.5487 -0.7754 -1.4722 8 7 4.0082 -1.9339 -2.2422 9 6 5.1517 -1.8608 -2.9518 10 8 5.8010 -0.8355 -2.9526 11 6 5.6199 -3.0417 -3.7374 12 8 4.9703 -4.0670 -3.7370 13 7 6.7637 -2.9688 -4.4466 14 6 7.2586 -4.1044 -5.0927 15 6 7.9341 -3.9788 -6.3012 16 6 8.4241 -5.1013 -6.9401 17 6 8.2452 -6.3519 -6.3803 18 6 7.5711 -6.4844 -5.1728 19 8 7.3956 -7.7136 -4.6242 20 6 8.0037 -8.7498 -5.2362 21 1 8.6679 -8.5708 -6.0688 22 6 7.7765 -10.0449 -4.7964 23 7 8.3703 -11.0558 -5.3933 24 14 6.6275 -10.3544 -3.3566 25 1 5.2438 -10.5477 -3.8601 26 1 7.0638 -11.5728 -2.6282 27 1 6.6613 -9.1891 -2.4369 28 6 7.0825 -5.3586 -4.5254 29 1 -0.3633 -0.9269 0.4438 30 1 -0.3632 0.0792 -1.0247 31 1 -0.3632 0.8478 0.5808 32 1 3.1716 -0.8748 1.2686 33 1 1.6112 -1.8583 1.2686 34 1 3.3884 0.0674 -2.1445 35 1 4.3021 -0.5103 -0.7304 36 1 3.4891 -2.7533 -2.2420 37 1 7.2432 -2.1278 -4.5086 38 1 8.0758 -3.0027 -6.7411 39 1 8.9488 -5.0012 -7.8787 40 1 8.6292 -7.2276 -6.8826 41 1 8.2112 -11.9620 -5.0860 42 1 6.5623 -5.4587 -3.5843 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042054390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:20 Heat of formation + Delta-G solvation = -63.430961 kcal Electronic energy + Delta-G solvation = -25110.866991 eV Core-core repulsion = 21249.937693 eV Total energy + Delta-G solvation = -3860.929298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18480 -40.92678 -40.00146 -38.92978 -38.37370 -36.14699 -35.22875 -34.44535 -31.44927 -30.55154 -30.12456 -28.01794 -27.25357 -25.59785 -23.67232 -22.83085 -22.23724 -21.81465 -21.11161 -20.02810 -19.79175 -19.10731 -17.98606 -17.30535 -16.98125 -16.93900 -16.87120 -16.39908 -15.89637 -15.77526 -15.63019 -15.42536 -15.09406 -14.83739 -14.44587 -14.29694 -14.24974 -14.03037 -13.92410 -13.35932 -13.16025 -13.09632 -12.77565 -12.75258 -12.53576 -12.40303 -12.26878 -12.03246 -11.51068 -11.41810 -11.09654 -11.01311 -10.89050 -10.67439 -10.29316 -9.48058 -9.01196 -8.51313 -6.23545 -0.08133 0.56958 0.63435 1.12258 1.29149 1.33205 1.50058 1.98647 2.26769 2.38729 2.72121 2.79218 3.04216 3.08997 3.32610 3.55803 3.85768 3.98117 4.05365 4.18647 4.30267 4.34134 4.44369 4.50152 4.52818 4.63919 4.64437 4.78567 4.86415 4.93627 4.96082 5.02477 5.20555 5.21461 5.25866 5.27843 5.34852 5.43522 5.64113 5.72390 5.81273 5.86422 6.14484 6.21713 6.60852 6.78911 6.83365 7.57492 8.59919 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.002698 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.214277 B =10375.550933 C =12143.203099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 H 0.114 0.886 4 C -0.174 4.174 5 C -0.176 4.176 6 H 0.116 0.884 7 C 0.150 3.850 8 N -0.685 5.685 9 C 0.521 3.479 10 O -0.534 6.534 11 C 0.501 3.499 12 O -0.522 6.522 13 N -0.627 5.627 14 C 0.176 3.824 15 C -0.190 4.190 16 C -0.049 4.049 17 C -0.242 4.242 18 C 0.137 3.863 19 O -0.245 6.245 20 C -0.397 4.397 21 H 0.088 0.912 22 C 0.013 3.987 23 N -0.918 5.918 24 Si 0.964 3.036 25 H -0.268 1.268 26 H -0.263 1.263 27 H -0.269 1.269 28 C -0.198 4.198 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.419 0.581 37 H 0.435 0.565 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.117 0.883 41 H 0.285 0.715 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 24.859 8.219 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.155 4.155 3 H 0.132 0.868 4 C -0.210 4.210 5 C -0.194 4.194 6 H 0.134 0.866 7 C 0.028 3.972 8 N -0.338 5.338 9 C 0.300 3.700 10 O -0.411 6.411 11 C 0.283 3.717 12 O -0.397 6.397 13 N -0.275 5.275 14 C 0.082 3.918 15 C -0.210 4.210 16 C -0.068 4.068 17 C -0.261 4.261 18 C 0.087 3.913 19 O -0.153 6.153 20 C -0.473 4.473 21 H 0.106 0.894 22 C -0.185 4.185 23 N -0.559 5.559 24 Si 0.787 3.213 25 H -0.193 1.193 26 H -0.188 1.188 27 H -0.193 1.193 28 C -0.220 4.220 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.257 0.743 37 H 0.276 0.724 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.047 24.622 8.477 28.692 hybrid contribution -0.118 -0.952 0.263 0.995 sum -12.165 23.670 8.739 28.011 Atomic orbital electron populations 1.21411 0.91928 1.02570 1.02355 1.22485 0.95952 0.94568 1.02479 0.86827 1.23366 1.03145 1.01699 0.92839 1.22533 0.97753 1.04255 0.94901 0.86593 1.21146 0.94551 0.87010 0.94495 1.45800 1.22826 1.18518 1.46679 1.19582 0.82533 0.87029 0.80844 1.90766 1.55700 1.31011 1.63633 1.20582 0.81673 0.88773 0.80696 1.90852 1.55170 1.32165 1.61524 1.42957 1.23498 1.12725 1.48303 1.17243 0.97036 0.84862 0.92670 1.20943 1.05382 1.00656 0.94032 1.21032 0.96280 0.90029 0.99427 1.21413 1.07279 0.99820 0.97614 1.19294 0.94431 0.85153 0.92462 1.83540 1.66833 1.13448 1.51448 1.20741 1.25441 0.84444 1.16702 0.89443 1.25196 0.98914 0.93537 1.00896 1.69714 1.44015 0.99791 1.42349 0.85313 0.78844 0.78141 0.79010 1.19276 1.18789 1.19348 1.20042 1.09313 0.90214 1.02387 0.92385 0.91906 0.91145 0.88303 0.88068 0.90028 0.90606 0.74309 0.72444 0.81804 0.82375 0.86510 0.90526 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 10.19 71.98 0.73 -0.26 16 2 C -0.14 -1.24 6.12 -10.79 -0.07 -1.31 16 3 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.17 -1.76 9.83 30.62 0.30 -1.46 16 5 C -0.18 -1.93 5.57 -10.77 -0.06 -1.99 16 6 H 0.12 1.25 8.04 -2.39 -0.02 1.23 16 7 C 0.15 2.10 5.96 86.38 0.51 2.61 16 8 N -0.69 -12.52 5.55 -464.51 -2.58 -15.10 16 9 C 0.52 12.18 7.89 87.24 0.69 12.87 16 10 O -0.53 -13.66 16.48 -3.27 -0.05 -13.72 16 11 C 0.50 14.15 7.62 87.24 0.66 14.81 16 12 O -0.52 -18.23 14.20 -3.31 -0.05 -18.27 16 13 N -0.63 -16.64 5.32 -304.89 -1.62 -18.26 16 14 C 0.18 5.82 6.26 38.20 0.24 6.06 16 15 C -0.19 -5.36 9.96 22.43 0.22 -5.13 16 16 C -0.05 -1.57 10.03 22.23 0.22 -1.35 16 17 C -0.24 -10.39 9.13 22.42 0.20 -10.18 16 18 C 0.14 6.63 6.64 22.56 0.15 6.78 16 19 O -0.25 -13.84 8.58 -22.75 -0.20 -14.03 16 20 C -0.40 -23.63 9.90 67.92 0.67 -22.96 16 21 H 0.09 5.34 5.53 -2.91 -0.02 5.33 16 22 C 0.01 0.79 5.49 84.83 0.47 1.25 16 23 N -0.92 -54.94 13.96 21.61 0.30 -54.64 16 24 Si 0.96 46.75 28.62 68.60 1.96 48.72 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 28 C -0.20 -8.43 8.60 22.52 0.19 -8.24 16 29 H 0.06 0.46 7.90 -2.39 -0.02 0.44 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 33 H 0.10 0.97 8.05 -2.39 -0.02 0.95 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.09 7.88 -2.39 -0.02 1.07 16 36 H 0.42 7.22 7.87 -92.71 -0.73 6.49 16 37 H 0.43 8.77 8.30 -92.71 -0.77 8.01 16 38 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.12 5.43 5.71 -2.91 -0.02 5.42 16 41 H 0.29 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.11 5.14 6.45 -2.91 -0.02 5.13 16 Total: -1.00 -72.17 363.97 2.50 -69.67 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.42 Total: 24.12 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.15 Total: -8.49 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -3.90 Total: -88.00 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.30 Total: -46.02 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.96 Total: 48.72 kcal Total: -72.17 2.50 -69.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042054390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.238 kcal (2) G-P(sol) polarization free energy of solvation -72.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds