Wall clock time and date at job start Tue Mar 31 2020 12:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.55945 * 2 1 4 4 C 1.52999 * 117.49642 * 145.69191 * 2 1 3 5 5 C 1.52996 * 117.49992 * 214.31357 * 2 1 3 6 6 H 1.09001 * 117.51855 * 145.02781 * 5 2 1 7 7 C 1.52999 * 117.49957 * 0.02562 * 5 2 1 8 8 N 1.46503 * 109.47151 * 174.98724 * 7 5 2 9 9 C 1.34781 * 119.99695 * 180.02562 * 8 7 5 10 10 O 1.21360 * 120.00354 * 359.97438 * 9 8 7 11 11 C 1.49355 * 119.99578 * 180.02562 * 9 8 7 12 12 O 1.21373 * 119.99856 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00003 * 179.97438 * 11 9 8 14 14 C 1.39722 * 120.00244 * 174.79048 * 13 11 9 15 15 C 1.39019 * 120.03582 * 326.25454 * 14 13 11 16 16 C 1.38146 * 120.05828 * 179.97438 * 15 14 13 17 17 C 1.38184 * 120.14259 * 359.79116 * 16 15 14 18 18 C 1.38922 * 120.08027 * 0.46425 * 17 16 15 19 19 O 1.35756 * 120.02715 * 179.78902 * 18 17 16 20 20 C 1.34829 * 116.99856 * 185.63188 * 19 18 17 21 21 H 1.08010 * 119.99911 * 5.41841 * 20 19 18 22 22 C 1.38646 * 120.00351 * 185.41020 * 20 19 18 23 23 N 1.31564 * 119.99784 * 359.72906 * 22 20 19 24 24 Si 1.86800 * 120.00575 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47141 * 89.99678 * 24 22 20 26 26 H 1.48493 * 109.47151 * 210.00270 * 24 22 20 27 27 H 1.48501 * 109.46593 * 330.00192 * 24 22 20 28 28 C 1.38757 * 119.94121 * 359.51363 * 18 17 16 29 29 H 1.08997 * 109.47172 * 205.68256 * 1 2 3 30 30 H 1.08991 * 109.47409 * 325.68531 * 1 2 3 31 31 H 1.09006 * 109.47040 * 85.68856 * 1 2 3 32 32 H 1.08998 * 117.50222 * 0.02562 * 4 2 1 33 33 H 1.08999 * 117.49512 * 214.98017 * 4 2 1 34 34 H 1.09008 * 109.47349 * 54.98530 * 7 5 2 35 35 H 1.09000 * 109.47142 * 294.98700 * 7 5 2 36 36 H 0.96997 * 120.00192 * 359.97438 * 8 7 5 37 37 H 0.97004 * 119.99534 * 354.78241 * 13 11 9 38 38 H 1.07999 * 119.97315 * 0.02562 * 15 14 13 39 39 H 1.07990 * 119.92928 * 179.97438 * 16 15 14 40 40 H 1.07996 * 119.96115 * 180.24960 * 17 16 15 41 41 H 0.97003 * 120.00141 * 179.97438 * 23 22 20 42 42 H 1.07996 * 120.07602 * 180.23374 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1209 -0.7650 6 1 3.1717 -0.8754 -1.2683 7 6 1.3589 -2.1557 -1.4720 8 7 2.2060 -3.0700 -2.2420 9 6 1.6468 -4.0701 -2.9518 10 8 0.4417 -4.2135 -2.9527 11 6 2.5104 -5.0025 -3.7364 12 8 3.7156 -4.8593 -3.7351 13 7 1.9513 -6.0029 -4.4458 14 6 2.7469 -6.8075 -5.2655 15 6 3.8492 -6.2640 -5.9152 16 6 4.6364 -7.0592 -6.7254 17 6 4.3336 -8.3975 -6.8892 18 6 3.2303 -8.9454 -6.2470 19 8 2.9314 -10.2593 -6.4121 20 6 1.7847 -10.7006 -5.8570 21 1 1.1085 -10.0019 -5.3866 22 6 1.4732 -12.0512 -5.8900 23 7 2.2941 -12.9016 -6.4678 24 14 -0.1158 -12.6626 -5.1216 25 1 -1.1975 -12.6423 -6.1388 26 1 0.0745 -14.0504 -4.6289 27 1 -0.4877 -11.7808 -3.9860 28 6 2.4376 -8.1500 -5.4320 29 1 -0.3633 -0.9261 0.4454 30 1 -0.3634 0.8487 0.5793 31 1 -0.3633 0.0773 -1.0248 32 1 1.6112 -1.8588 1.2678 33 1 3.1715 -0.8752 1.2683 34 1 0.6678 -1.6475 -2.1445 35 1 0.7946 -2.7210 -0.7304 36 1 3.1691 -2.9552 -2.2416 37 1 0.9966 -6.1643 -4.3871 38 1 4.0909 -5.2194 -5.7858 39 1 5.4920 -6.6348 -7.2294 40 1 4.9534 -9.0174 -7.5201 41 1 2.0765 -13.8466 -6.4907 42 1 1.5816 -8.5746 -4.9287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042054392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:29 Heat of formation + Delta-G solvation = -43.881410 kcal Electronic energy + Delta-G solvation = -25108.788869 eV Core-core repulsion = 21248.707303 eV Total energy + Delta-G solvation = -3860.081566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.94670 -39.50563 -38.70838 -38.18355 -36.55971 -35.01571 -34.06440 -32.26639 -29.61654 -29.23946 -28.76051 -27.78832 -25.41602 -24.46324 -22.08622 -21.90507 -21.54796 -20.62817 -19.89347 -18.63770 -18.03476 -17.36950 -16.95713 -16.37168 -16.06285 -15.48532 -15.19107 -15.07439 -14.76494 -14.37689 -14.17430 -14.05268 -13.88788 -13.64551 -13.49498 -13.27973 -13.03976 -12.66350 -12.42699 -12.01495 -11.94530 -11.76911 -11.69852 -11.56968 -11.10543 -10.95833 -10.86283 -10.56485 -10.46756 -10.44068 -9.93680 -9.66469 -9.48666 -9.42946 -8.83933 -7.83571 -7.23759 -6.47456 -4.07316 1.17894 2.06175 2.23168 2.35729 3.11121 3.12845 3.17190 3.17816 3.20723 3.58384 3.94754 4.08898 4.30778 4.33599 4.40784 4.53814 4.72607 4.83953 5.06888 5.08950 5.22476 5.24524 5.35036 5.36276 5.38456 5.55730 5.61496 5.66460 5.82494 5.89923 5.94296 5.96474 6.13242 6.17756 6.52528 6.69574 6.85921 6.95566 7.07382 7.22183 7.35868 7.44025 7.64945 7.71544 7.95489 8.00784 8.97858 9.66362 10.70234 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002430 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.700727 B =11521.409664 C =12763.881996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 H 0.108 0.892 4 C -0.172 4.172 5 C -0.171 4.171 6 H 0.114 0.886 7 C 0.150 3.850 8 N -0.699 5.699 9 C 0.511 3.489 10 O -0.518 6.518 11 C 0.504 3.496 12 O -0.501 6.501 13 N -0.636 5.636 14 C 0.173 3.827 15 C -0.205 4.205 16 C -0.063 4.063 17 C -0.195 4.195 18 C 0.168 3.832 19 O -0.173 6.173 20 C -0.393 4.393 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.250 4.250 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.414 0.586 37 H 0.419 0.581 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 23.019 10.910 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.209 4.209 5 C -0.190 4.190 6 H 0.132 0.868 7 C 0.027 3.973 8 N -0.353 5.353 9 C 0.291 3.709 10 O -0.393 6.393 11 C 0.285 3.715 12 O -0.376 6.376 13 N -0.281 5.281 14 C 0.081 3.919 15 C -0.225 4.225 16 C -0.081 4.081 17 C -0.215 4.215 18 C 0.113 3.887 19 O -0.077 6.077 20 C -0.469 4.469 21 H 0.108 0.892 22 C -0.164 4.164 23 N -0.495 5.495 24 Si 0.765 3.235 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.271 4.271 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.251 0.749 37 H 0.256 0.744 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.611 22.607 10.774 25.095 hybrid contribution -0.785 -0.312 0.549 1.007 sum -2.396 22.295 11.323 25.120 Atomic orbital electron populations 1.21412 0.92516 1.02375 1.02299 1.22386 0.95686 0.94367 1.03554 0.87409 1.23256 1.02858 1.01526 0.93237 1.22534 1.01631 1.00142 0.94672 0.86847 1.20987 0.92231 0.89451 0.94645 1.45719 1.12038 1.29697 1.47880 1.20106 0.88100 0.82081 0.80585 1.90780 1.14282 1.71905 1.62371 1.20030 0.88167 0.82441 0.80862 1.90786 1.13916 1.71225 1.61632 1.43140 1.12585 1.29992 1.42407 1.17395 0.93147 0.89271 0.92122 1.20520 0.98617 1.00179 1.03212 1.20523 0.98052 0.92706 0.96866 1.20290 0.99678 0.95355 1.06165 1.19075 0.92360 0.85409 0.91853 1.84024 1.39613 1.17951 1.66066 1.21286 0.95109 0.92701 1.37821 0.89159 1.25288 0.99438 0.94731 0.96985 1.70039 1.35937 1.03315 1.40232 0.85718 0.80067 0.78531 0.79173 1.19826 1.20237 1.19195 1.20846 1.06273 0.91787 1.08204 0.92186 0.91873 0.91817 0.88342 0.88439 0.90394 0.90673 0.74914 0.74406 0.86330 0.86402 0.86192 0.91964 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 9.20 37.16 0.34 -0.32 16 2 C -0.14 -0.75 6.41 -90.62 -0.58 -1.34 16 3 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.17 -0.96 9.82 -26.73 -0.26 -1.22 16 5 C -0.17 -1.04 5.85 -90.62 -0.53 -1.57 16 6 H 0.11 0.62 8.04 -51.93 -0.42 0.21 16 7 C 0.15 1.21 5.04 -4.04 -0.02 1.19 16 8 N -0.70 -6.89 5.55 -60.76 -0.34 -7.23 16 9 C 0.51 6.65 7.89 -11.63 -0.09 6.56 16 10 O -0.52 -7.70 16.48 5.49 0.09 -7.61 16 11 C 0.50 7.63 7.62 -11.63 -0.09 7.54 16 12 O -0.50 -8.39 14.18 5.48 0.08 -8.31 16 13 N -0.64 -10.22 5.32 -10.31 -0.05 -10.28 16 14 C 0.17 3.31 6.27 -83.78 -0.52 2.79 16 15 C -0.20 -3.81 8.65 -39.33 -0.34 -4.15 16 16 C -0.06 -1.14 10.03 -39.63 -0.40 -1.54 16 17 C -0.20 -4.09 9.99 -39.35 -0.39 -4.48 16 18 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 19 O -0.17 -4.88 9.76 0.03 0.00 -4.88 16 20 C -0.39 -10.83 9.44 30.88 0.29 -10.53 16 21 H 0.09 2.29 5.30 -52.48 -0.28 2.02 16 22 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 24 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 C -0.25 -5.39 9.05 -39.19 -0.35 -5.75 16 29 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.34 7.83 -51.93 -0.41 -0.07 16 32 H 0.10 0.57 7.94 -51.93 -0.41 0.15 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.65 7.77 -51.92 -0.40 0.24 16 35 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 36 H 0.41 3.60 7.87 -40.82 -0.32 3.28 16 37 H 0.42 6.03 8.30 -40.82 -0.34 5.69 16 38 H 0.12 2.09 6.44 -52.49 -0.34 1.75 16 39 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.13 2.83 5.71 -52.49 -0.30 2.53 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -32.15 363.02 -7.61 -39.76 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.28 Total: 10.06 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -3.31 Total: -8.09 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.37 Total: -41.75 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.17 Total: -20.80 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.15 -7.61 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042054392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.120 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds