Wall clock time and date at job start Tue Mar 31 2020 12:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.55945 * 2 1 4 4 C 1.52999 * 117.49642 * 145.69191 * 2 1 3 5 5 C 1.52996 * 117.49992 * 214.31357 * 2 1 3 6 6 H 1.09001 * 117.51855 * 145.02781 * 5 2 1 7 7 C 1.52999 * 117.49957 * 0.02562 * 5 2 1 8 8 N 1.46503 * 109.47151 * 174.98724 * 7 5 2 9 9 C 1.34781 * 119.99695 * 180.02562 * 8 7 5 10 10 O 1.21360 * 120.00354 * 359.97438 * 9 8 7 11 11 C 1.49355 * 119.99578 * 180.02562 * 9 8 7 12 12 O 1.21373 * 119.99856 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00003 * 179.97438 * 11 9 8 14 14 C 1.39722 * 120.00244 * 174.79048 * 13 11 9 15 15 C 1.39019 * 120.03582 * 326.25454 * 14 13 11 16 16 C 1.38146 * 120.05828 * 179.97438 * 15 14 13 17 17 C 1.38184 * 120.14259 * 359.79116 * 16 15 14 18 18 C 1.38922 * 120.08027 * 0.46425 * 17 16 15 19 19 O 1.35756 * 120.02715 * 179.78902 * 18 17 16 20 20 C 1.34829 * 116.99856 * 185.63188 * 19 18 17 21 21 H 1.08010 * 119.99911 * 5.41841 * 20 19 18 22 22 C 1.38646 * 120.00351 * 185.41020 * 20 19 18 23 23 N 1.31564 * 119.99784 * 359.72906 * 22 20 19 24 24 Si 1.86800 * 120.00575 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47141 * 89.99678 * 24 22 20 26 26 H 1.48493 * 109.47151 * 210.00270 * 24 22 20 27 27 H 1.48501 * 109.46593 * 330.00192 * 24 22 20 28 28 C 1.38757 * 119.94121 * 359.51363 * 18 17 16 29 29 H 1.08997 * 109.47172 * 205.68256 * 1 2 3 30 30 H 1.08991 * 109.47409 * 325.68531 * 1 2 3 31 31 H 1.09006 * 109.47040 * 85.68856 * 1 2 3 32 32 H 1.08998 * 117.50222 * 0.02562 * 4 2 1 33 33 H 1.08999 * 117.49512 * 214.98017 * 4 2 1 34 34 H 1.09008 * 109.47349 * 54.98530 * 7 5 2 35 35 H 1.09000 * 109.47142 * 294.98700 * 7 5 2 36 36 H 0.96997 * 120.00192 * 359.97438 * 8 7 5 37 37 H 0.97004 * 119.99534 * 354.78241 * 13 11 9 38 38 H 1.07999 * 119.97315 * 0.02562 * 15 14 13 39 39 H 1.07990 * 119.92928 * 179.97438 * 16 15 14 40 40 H 1.07996 * 119.96115 * 180.24960 * 17 16 15 41 41 H 0.97003 * 120.00141 * 179.97438 * 23 22 20 42 42 H 1.07996 * 120.07602 * 180.23374 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1209 -0.7650 6 1 3.1717 -0.8754 -1.2683 7 6 1.3589 -2.1557 -1.4720 8 7 2.2060 -3.0700 -2.2420 9 6 1.6468 -4.0701 -2.9518 10 8 0.4417 -4.2135 -2.9527 11 6 2.5104 -5.0025 -3.7364 12 8 3.7156 -4.8593 -3.7351 13 7 1.9513 -6.0029 -4.4458 14 6 2.7469 -6.8075 -5.2655 15 6 3.8492 -6.2640 -5.9152 16 6 4.6364 -7.0592 -6.7254 17 6 4.3336 -8.3975 -6.8892 18 6 3.2303 -8.9454 -6.2470 19 8 2.9314 -10.2593 -6.4121 20 6 1.7847 -10.7006 -5.8570 21 1 1.1085 -10.0019 -5.3866 22 6 1.4732 -12.0512 -5.8900 23 7 2.2941 -12.9016 -6.4678 24 14 -0.1158 -12.6626 -5.1216 25 1 -1.1975 -12.6423 -6.1388 26 1 0.0745 -14.0504 -4.6289 27 1 -0.4877 -11.7808 -3.9860 28 6 2.4376 -8.1500 -5.4320 29 1 -0.3633 -0.9261 0.4454 30 1 -0.3634 0.8487 0.5793 31 1 -0.3633 0.0773 -1.0248 32 1 1.6112 -1.8588 1.2678 33 1 3.1715 -0.8752 1.2683 34 1 0.6678 -1.6475 -2.1445 35 1 0.7946 -2.7210 -0.7304 36 1 3.1691 -2.9552 -2.2416 37 1 0.9966 -6.1643 -4.3871 38 1 4.0909 -5.2194 -5.7858 39 1 5.4920 -6.6348 -7.2294 40 1 4.9534 -9.0174 -7.5201 41 1 2.0765 -13.8466 -6.4907 42 1 1.5816 -8.5746 -4.9287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042054392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:28 Heat of formation + Delta-G solvation = -65.622690 kcal Electronic energy + Delta-G solvation = -25109.731642 eV Core-core repulsion = 21248.707303 eV Total energy + Delta-G solvation = -3861.024339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17130 -40.86416 -39.96837 -39.00239 -38.18974 -36.18107 -35.23774 -34.24011 -31.16436 -30.45840 -29.71676 -28.56633 -27.34893 -25.64839 -23.56712 -22.97465 -22.51920 -21.55917 -20.94370 -19.87612 -19.64839 -18.90754 -18.01493 -17.29940 -17.17461 -17.01125 -16.75466 -16.14475 -16.07665 -15.84128 -15.54182 -15.41880 -15.06805 -14.66145 -14.61253 -14.35960 -14.15300 -13.83510 -13.60012 -13.34293 -13.14024 -13.07757 -12.69826 -12.58682 -12.45722 -12.44616 -12.16633 -12.12964 -11.47552 -11.40818 -11.08437 -10.99539 -10.76879 -10.66595 -10.29266 -9.43951 -8.95114 -8.47523 -6.16111 -0.07343 0.58151 0.69944 1.12826 1.35987 1.44730 1.52748 1.98813 2.17190 2.42449 2.80386 2.81596 3.13855 3.26156 3.46830 3.58751 3.87573 3.91110 4.07805 4.21068 4.28125 4.38765 4.43636 4.53594 4.57329 4.58905 4.63499 4.88373 4.92853 4.97356 4.99142 5.02872 5.09380 5.21572 5.23891 5.27452 5.31058 5.43016 5.60205 5.63762 5.83102 6.00129 6.11387 6.22660 6.58384 6.77474 6.96982 7.75141 8.75089 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002430 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.700727 B =11521.409664 C =12763.881996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 H 0.119 0.881 4 C -0.173 4.173 5 C -0.175 4.175 6 H 0.123 0.877 7 C 0.149 3.851 8 N -0.681 5.681 9 C 0.517 3.483 10 O -0.538 6.538 11 C 0.508 3.492 12 O -0.515 6.515 13 N -0.635 5.635 14 C 0.178 3.822 15 C -0.194 4.194 16 C -0.048 4.048 17 C -0.206 4.206 18 C 0.134 3.866 19 O -0.223 6.223 20 C -0.413 4.413 21 H 0.101 0.899 22 C -0.021 4.021 23 N -0.917 5.917 24 Si 1.016 2.984 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.254 1.254 28 C -0.256 4.256 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.422 0.578 37 H 0.426 0.574 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.123 0.877 41 H 0.273 0.727 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 25.968 12.187 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 H 0.137 0.863 4 C -0.210 4.210 5 C -0.193 4.193 6 H 0.141 0.859 7 C 0.027 3.973 8 N -0.334 5.334 9 C 0.297 3.703 10 O -0.416 6.416 11 C 0.290 3.710 12 O -0.390 6.390 13 N -0.282 5.282 14 C 0.084 3.916 15 C -0.215 4.215 16 C -0.066 4.066 17 C -0.225 4.225 18 C 0.083 3.917 19 O -0.130 6.130 20 C -0.489 4.489 21 H 0.119 0.881 22 C -0.219 4.219 23 N -0.555 5.555 24 Si 0.836 3.164 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.178 1.178 28 C -0.278 4.278 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.260 0.740 37 H 0.265 0.735 38 H 0.155 0.845 39 H 0.179 0.821 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.774 25.646 12.079 28.404 hybrid contribution -0.585 -0.880 0.185 1.073 sum -2.359 24.766 12.264 27.737 Atomic orbital electron populations 1.21441 0.92571 1.02548 1.02305 1.22474 0.95707 0.94660 1.02652 0.86291 1.23317 1.03293 1.01585 0.92812 1.22494 1.01835 1.00073 0.94912 0.85889 1.21110 0.92395 0.89413 0.94403 1.45731 1.12700 1.28554 1.46454 1.19666 0.87401 0.82387 0.80864 1.90786 1.14840 1.72590 1.63378 1.20406 0.88215 0.82056 0.80326 1.90772 1.14618 1.71514 1.62061 1.43125 1.12815 1.29944 1.42291 1.17431 0.93457 0.88633 0.92075 1.20896 0.97726 1.01028 1.01809 1.20962 0.98677 0.91202 0.95790 1.20560 0.99062 0.96765 1.06158 1.19612 0.94061 0.84661 0.93405 1.83987 1.40525 1.20155 1.68286 1.21769 0.95708 0.93477 1.37953 0.88145 1.26549 1.03324 0.94596 0.97386 1.70178 1.38641 1.03738 1.42909 0.84617 0.75215 0.78009 0.78597 1.18758 1.19652 1.17773 1.20851 1.05994 0.92839 1.08101 0.92660 0.91019 0.92008 0.88696 0.87560 0.90390 0.91032 0.74012 0.73493 0.84451 0.82139 0.85856 0.91788 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.20 71.98 0.66 -0.46 16 2 C -0.14 -1.14 6.41 -10.79 -0.07 -1.21 16 3 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.17 -1.56 9.82 30.59 0.30 -1.26 16 5 C -0.17 -1.71 5.85 -10.80 -0.06 -1.77 16 6 H 0.12 0.99 8.04 -2.39 -0.02 0.97 16 7 C 0.15 2.10 5.04 86.38 0.44 2.54 16 8 N -0.68 -11.90 5.55 -464.48 -2.58 -14.48 16 9 C 0.52 12.48 7.89 87.24 0.69 13.17 16 10 O -0.54 -15.20 16.48 -3.28 -0.05 -15.25 16 11 C 0.51 14.34 7.62 87.24 0.66 15.01 16 12 O -0.51 -15.90 14.18 -3.32 -0.05 -15.95 16 13 N -0.64 -19.51 5.32 -304.89 -1.62 -21.13 16 14 C 0.18 6.57 6.27 38.20 0.24 6.81 16 15 C -0.19 -6.71 8.65 22.44 0.19 -6.51 16 16 C -0.05 -1.62 10.03 22.24 0.22 -1.40 16 17 C -0.21 -8.59 9.99 22.42 0.22 -8.36 16 18 C 0.13 6.59 6.64 22.56 0.15 6.74 16 19 O -0.22 -13.22 9.76 -22.80 -0.22 -13.44 16 20 C -0.41 -23.70 9.44 67.92 0.64 -23.06 16 21 H 0.10 5.28 5.30 -2.91 -0.02 5.27 16 22 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 23 N -0.92 -55.68 13.67 21.61 0.30 -55.39 16 24 Si 1.02 42.56 29.55 68.60 2.03 44.59 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 28 C -0.26 -11.20 9.05 22.52 0.20 -10.99 16 29 H 0.05 0.52 7.90 -2.39 -0.02 0.50 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.55 7.83 -2.38 -0.02 0.54 16 32 H 0.09 0.93 7.94 -2.39 -0.02 0.91 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 1.15 7.77 -2.38 -0.02 1.13 16 35 H 0.07 1.10 7.88 -2.39 -0.02 1.08 16 36 H 0.42 6.22 7.87 -92.71 -0.73 5.49 16 37 H 0.43 11.83 8.30 -92.71 -0.77 11.06 16 38 H 0.14 4.32 6.44 -2.91 -0.02 4.30 16 39 H 0.16 4.07 8.06 -2.92 -0.02 4.05 16 40 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.13 5.56 5.71 -2.91 -0.02 5.55 16 Total: -1.00 -71.89 363.02 2.34 -69.55 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.42 Total: 32.94 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 4.96 Total: -11.45 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -3.90 Total: -90.99 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.32 Total: -44.64 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.89 2.34 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042054392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.923 kcal (2) G-P(sol) polarization free energy of solvation -71.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds