Wall clock time and date at job start Tue Mar 31 2020 12:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 115.56303 * 2 1 4 4 C 1.52998 * 117.49653 * 145.69220 * 2 1 3 5 5 C 1.52996 * 60.00008 * 107.48668 * 4 2 1 6 6 H 1.09000 * 117.50010 * 252.48611 * 5 4 2 7 7 C 1.53009 * 117.50116 * 107.48914 * 5 4 2 8 8 N 1.46498 * 109.47221 * 116.38791 * 7 5 4 9 9 C 1.34775 * 120.00162 * 180.02562 * 8 7 5 10 10 O 1.21362 * 119.99809 * 0.02562 * 9 8 7 11 11 C 1.49318 * 120.00067 * 179.72604 * 9 8 7 12 12 O 1.21390 * 120.00017 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99645 * 180.02562 * 11 9 8 14 14 C 1.39747 * 119.99718 * 175.49998 * 13 11 9 15 15 C 1.38992 * 120.00572 * 214.86017 * 14 13 11 16 16 C 1.37972 * 119.99296 * 179.76336 * 15 14 13 17 17 C 1.38936 * 120.00574 * 0.49733 * 16 15 14 18 18 O 1.35758 * 119.99372 * 179.76616 * 17 16 15 19 19 C 1.34796 * 116.99946 * 185.36304 * 18 17 16 20 20 H 1.08002 * 120.00384 * 354.96248 * 19 18 17 21 21 C 1.38653 * 119.99854 * 174.95720 * 19 18 17 22 22 N 1.31562 * 119.99992 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00096 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47383 * 89.99574 * 23 21 19 25 25 H 1.48505 * 109.47009 * 209.99704 * 23 21 19 26 26 H 1.48502 * 109.46959 * 329.99453 * 23 21 19 27 27 C 1.38939 * 120.01153 * 359.77793 * 17 16 15 28 28 C 1.37963 * 120.01100 * 359.96371 * 27 17 16 29 29 H 1.08994 * 109.47097 * 205.68828 * 1 2 3 30 30 H 1.09006 * 109.46719 * 325.68881 * 1 2 3 31 31 H 1.09002 * 109.46674 * 85.68475 * 1 2 3 32 32 H 1.09003 * 117.49776 * 359.97438 * 4 2 1 33 33 H 1.08999 * 117.51581 * 214.96722 * 4 2 1 34 34 H 1.09002 * 109.46274 * 356.39335 * 7 5 4 35 35 H 1.08991 * 109.47420 * 236.39174 * 7 5 4 36 36 H 0.97009 * 120.00101 * 0.02562 * 8 7 5 37 37 H 0.96999 * 120.00593 * 355.49254 * 13 11 9 38 38 H 1.08002 * 120.00827 * 0.02562 * 15 14 13 39 39 H 1.08003 * 119.99647 * 180.25273 * 16 15 14 40 40 H 0.96999 * 119.99973 * 180.02562 * 22 21 19 41 41 H 1.07997 * 119.99312 * 179.97438 * 27 17 16 42 42 H 1.07995 * 120.00431 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7650 6 1 1.6114 -1.8587 -1.2683 7 6 3.5490 -0.7760 -1.4716 8 7 4.0083 -1.9345 -2.2416 9 6 5.1525 -1.8621 -2.9502 10 8 5.8025 -0.8373 -2.9499 11 6 5.6238 -3.0450 -3.7301 12 8 4.9761 -4.0717 -3.7264 13 7 6.7682 -2.9726 -4.4382 14 6 7.2585 -4.1066 -5.0914 15 6 8.6293 -4.3156 -5.1867 16 6 9.1130 -5.4378 -5.8274 17 6 8.2301 -6.3535 -6.3864 18 8 8.7064 -7.4551 -7.0209 19 6 7.8040 -8.2447 -7.6366 20 1 6.7489 -8.0343 -7.5424 21 6 8.2304 -9.3271 -8.3910 22 7 7.3496 -10.0981 -8.9915 23 14 10.0553 -9.6914 -8.5536 24 1 10.4772 -10.6039 -7.4607 25 1 10.3163 -10.3364 -9.8655 26 1 10.8231 -8.4234 -8.4639 27 6 6.8599 -6.1418 -6.2963 28 6 6.3755 -5.0227 -5.6511 29 1 -0.3633 -0.9260 0.4454 30 1 -0.3633 0.8489 0.5793 31 1 -0.3633 0.0773 -1.0248 32 1 1.6111 -1.8583 1.2685 33 1 3.1716 -0.8756 1.2682 34 1 4.3022 -0.5112 -0.7295 35 1 3.3891 0.0669 -2.1438 36 1 3.4889 -2.7538 -2.2415 37 1 7.2516 -2.1336 -4.4946 38 1 9.3158 -3.6020 -4.7556 39 1 10.1781 -5.6023 -5.8979 40 1 7.6479 -10.8556 -9.5190 41 1 6.1739 -6.8536 -6.7312 42 1 5.3104 -4.8580 -5.5815 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042054546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:36 Heat of formation + Delta-G solvation = -41.366083 kcal Electronic energy + Delta-G solvation = -24788.087553 eV Core-core repulsion = 20928.115059 eV Total energy + Delta-G solvation = -3859.972494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93681 -39.52884 -38.76615 -38.21345 -36.76285 -35.02122 -33.91864 -32.36632 -30.37721 -29.76188 -28.61737 -27.24515 -25.39171 -24.06563 -22.48300 -21.71688 -21.38222 -20.96796 -20.05038 -18.85670 -17.84878 -17.45910 -17.11313 -16.32288 -16.22528 -15.95866 -15.07115 -14.99031 -14.70032 -14.21873 -14.08927 -13.99094 -13.85323 -13.77088 -13.60696 -13.22581 -12.84377 -12.69563 -12.49488 -12.32520 -11.96266 -11.92390 -11.84338 -11.76245 -11.51585 -10.99661 -10.77652 -10.60197 -10.45610 -10.26481 -9.83478 -9.64204 -9.50445 -9.29896 -8.81983 -8.35824 -7.15534 -6.44876 -4.10609 1.20149 2.02684 2.07469 2.28464 3.14685 3.18999 3.21963 3.24028 3.37967 3.57824 4.07020 4.20830 4.30792 4.31547 4.42717 4.48124 4.70616 4.79213 4.83252 5.04021 5.07158 5.25024 5.30630 5.33459 5.35234 5.50249 5.56289 5.57313 5.63928 5.80279 5.93267 5.95990 6.01897 6.13071 6.47918 6.64213 6.75538 6.90923 6.98254 7.22715 7.35169 7.52257 7.63925 7.75065 7.96210 8.04154 8.89648 9.50607 10.62371 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.002022 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.051856 B =13842.378087 C =14525.695258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.143 4.143 3 H 0.107 0.893 4 C -0.171 4.171 5 C -0.171 4.171 6 H 0.114 0.886 7 C 0.150 3.850 8 N -0.699 5.699 9 C 0.512 3.488 10 O -0.523 6.523 11 C 0.497 3.503 12 O -0.507 6.507 13 N -0.626 5.626 14 C 0.032 3.968 15 C -0.087 4.087 16 C -0.177 4.177 17 C 0.155 3.845 18 O -0.213 6.213 19 C -0.390 4.390 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.876 5.876 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.208 4.208 28 C -0.063 4.063 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.415 0.585 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.280 0.720 41 H 0.138 0.862 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 19.384 16.075 26.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 H 0.126 0.874 4 C -0.208 4.208 5 C -0.189 4.189 6 H 0.132 0.868 7 C 0.027 3.973 8 N -0.353 5.353 9 C 0.293 3.707 10 O -0.399 6.399 11 C 0.278 3.722 12 O -0.382 6.382 13 N -0.271 5.271 14 C -0.060 4.060 15 C -0.108 4.108 16 C -0.197 4.197 17 C 0.102 3.898 18 O -0.118 6.118 19 C -0.465 4.465 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.514 5.514 23 Si 0.732 3.268 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.228 4.228 28 C -0.082 4.082 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.252 0.748 37 H 0.251 0.749 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.090 0.910 41 H 0.156 0.844 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.676 19.109 15.929 26.347 hybrid contribution 0.543 -0.306 -0.145 0.640 sum -8.133 18.803 15.784 25.862 Atomic orbital electron populations 1.21389 0.92430 1.02196 1.02163 1.22396 0.95557 0.94575 1.03597 0.87444 1.23288 1.02876 1.01361 0.93273 1.22575 0.98332 1.03379 0.94641 0.86798 1.21002 0.93794 0.87922 0.94626 1.45730 1.24012 1.17638 1.47903 1.20137 0.81780 0.88241 0.80585 1.90761 1.55175 1.31213 1.62743 1.20012 0.82884 0.88249 0.81041 1.90789 1.54544 1.30767 1.62103 1.42847 1.23851 1.12983 1.47439 1.17302 0.92556 0.91299 1.04889 1.20388 0.92713 0.97470 1.00180 1.19996 0.98956 0.94893 1.05841 1.19185 0.91932 0.86675 0.91974 1.83557 1.37209 1.30554 1.60433 1.20793 0.89878 1.07365 1.28466 0.87482 1.24487 1.00005 0.94823 0.94702 1.69649 1.34351 1.16482 1.30880 0.86166 0.83587 0.79463 0.77608 1.19855 1.20780 1.18297 1.21214 0.95427 1.00170 1.05982 1.20899 0.99417 0.93414 0.94516 0.92365 0.91914 0.91960 0.88385 0.88440 0.90728 0.90460 0.74828 0.74884 0.86231 0.85836 0.90971 0.84402 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.19 37.16 0.38 -0.19 16 2 C -0.14 -0.74 6.13 -90.62 -0.56 -1.30 16 3 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.17 -0.92 9.82 -26.73 -0.26 -1.19 16 5 C -0.17 -1.01 5.57 -90.62 -0.50 -1.52 16 6 H 0.11 0.65 8.04 -51.93 -0.42 0.24 16 7 C 0.15 1.13 5.96 -4.04 -0.02 1.11 16 8 N -0.70 -6.63 5.55 -60.77 -0.34 -6.97 16 9 C 0.51 6.27 7.88 -11.65 -0.09 6.18 16 10 O -0.52 -7.20 16.48 5.49 0.09 -7.11 16 11 C 0.50 7.10 7.73 -11.65 -0.09 7.01 16 12 O -0.51 -8.40 13.91 5.46 0.08 -8.33 16 13 N -0.63 -8.85 5.32 -10.27 -0.05 -8.90 16 14 C 0.03 0.54 6.30 -83.69 -0.53 0.02 16 15 C -0.09 -1.43 9.96 -39.40 -0.39 -1.83 16 16 C -0.18 -3.37 9.98 -39.42 -0.39 -3.76 16 17 C 0.16 3.52 6.65 -39.06 -0.26 3.26 16 18 O -0.21 -5.52 8.58 0.12 0.00 -5.52 16 19 C -0.39 -10.85 9.94 30.89 0.31 -10.54 16 20 H 0.11 3.05 5.43 -52.49 -0.28 2.77 16 21 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 22 N -0.88 -25.08 13.96 55.48 0.77 -24.30 16 23 Si 0.91 21.38 28.62 -169.99 -4.86 16.52 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.21 -4.54 9.16 -39.42 -0.36 -4.90 16 28 C -0.06 -1.21 8.69 -39.40 -0.34 -1.55 16 29 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 33 H 0.10 0.51 8.03 -51.93 -0.42 0.10 16 34 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.42 3.59 7.87 -40.82 -0.32 3.27 16 37 H 0.41 4.88 8.30 -40.82 -0.34 4.54 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.14 3.15 5.63 -52.49 -0.30 2.86 16 42 H 0.13 2.41 6.22 -52.49 -0.33 2.09 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -31.16 363.51 -7.36 -38.52 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.31 Total: 8.15 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -3.22 Total: -7.53 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.38 Total: -40.17 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.17 Total: -20.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.16 -7.36 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042054546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.848 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds