Wall clock time and date at job start Tue Mar 31 2020 12:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 115.56303 * 2 1 4 4 C 1.52998 * 117.49653 * 145.69220 * 2 1 3 5 5 C 1.52996 * 60.00008 * 107.48668 * 4 2 1 6 6 H 1.09000 * 117.50010 * 252.48611 * 5 4 2 7 7 C 1.53009 * 117.50116 * 107.48914 * 5 4 2 8 8 N 1.46498 * 109.47221 * 116.38791 * 7 5 4 9 9 C 1.34775 * 120.00162 * 180.02562 * 8 7 5 10 10 O 1.21362 * 119.99809 * 0.02562 * 9 8 7 11 11 C 1.49318 * 120.00067 * 179.72604 * 9 8 7 12 12 O 1.21390 * 120.00017 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99645 * 180.02562 * 11 9 8 14 14 C 1.39747 * 119.99718 * 175.49998 * 13 11 9 15 15 C 1.38992 * 120.00572 * 214.86017 * 14 13 11 16 16 C 1.37972 * 119.99296 * 179.76336 * 15 14 13 17 17 C 1.38936 * 120.00574 * 0.49733 * 16 15 14 18 18 O 1.35758 * 119.99372 * 179.76616 * 17 16 15 19 19 C 1.34796 * 116.99946 * 185.36304 * 18 17 16 20 20 H 1.08002 * 120.00384 * 354.96248 * 19 18 17 21 21 C 1.38653 * 119.99854 * 174.95720 * 19 18 17 22 22 N 1.31562 * 119.99992 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00096 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47383 * 89.99574 * 23 21 19 25 25 H 1.48505 * 109.47009 * 209.99704 * 23 21 19 26 26 H 1.48502 * 109.46959 * 329.99453 * 23 21 19 27 27 C 1.38939 * 120.01153 * 359.77793 * 17 16 15 28 28 C 1.37963 * 120.01100 * 359.96371 * 27 17 16 29 29 H 1.08994 * 109.47097 * 205.68828 * 1 2 3 30 30 H 1.09006 * 109.46719 * 325.68881 * 1 2 3 31 31 H 1.09002 * 109.46674 * 85.68475 * 1 2 3 32 32 H 1.09003 * 117.49776 * 359.97438 * 4 2 1 33 33 H 1.08999 * 117.51581 * 214.96722 * 4 2 1 34 34 H 1.09002 * 109.46274 * 356.39335 * 7 5 4 35 35 H 1.08991 * 109.47420 * 236.39174 * 7 5 4 36 36 H 0.97009 * 120.00101 * 0.02562 * 8 7 5 37 37 H 0.96999 * 120.00593 * 355.49254 * 13 11 9 38 38 H 1.08002 * 120.00827 * 0.02562 * 15 14 13 39 39 H 1.08003 * 119.99647 * 180.25273 * 16 15 14 40 40 H 0.96999 * 119.99973 * 180.02562 * 22 21 19 41 41 H 1.07997 * 119.99312 * 179.97438 * 27 17 16 42 42 H 1.07995 * 120.00431 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7650 6 1 1.6114 -1.8587 -1.2683 7 6 3.5490 -0.7760 -1.4716 8 7 4.0083 -1.9345 -2.2416 9 6 5.1525 -1.8621 -2.9502 10 8 5.8025 -0.8373 -2.9499 11 6 5.6238 -3.0450 -3.7301 12 8 4.9761 -4.0717 -3.7264 13 7 6.7682 -2.9726 -4.4382 14 6 7.2585 -4.1066 -5.0914 15 6 8.6293 -4.3156 -5.1867 16 6 9.1130 -5.4378 -5.8274 17 6 8.2301 -6.3535 -6.3864 18 8 8.7064 -7.4551 -7.0209 19 6 7.8040 -8.2447 -7.6366 20 1 6.7489 -8.0343 -7.5424 21 6 8.2304 -9.3271 -8.3910 22 7 7.3496 -10.0981 -8.9915 23 14 10.0553 -9.6914 -8.5536 24 1 10.4772 -10.6039 -7.4607 25 1 10.3163 -10.3364 -9.8655 26 1 10.8231 -8.4234 -8.4639 27 6 6.8599 -6.1418 -6.2963 28 6 6.3755 -5.0227 -5.6511 29 1 -0.3633 -0.9260 0.4454 30 1 -0.3633 0.8489 0.5793 31 1 -0.3633 0.0773 -1.0248 32 1 1.6111 -1.8583 1.2685 33 1 3.1716 -0.8756 1.2682 34 1 4.3022 -0.5112 -0.7295 35 1 3.3891 0.0669 -2.1438 36 1 3.4889 -2.7538 -2.2415 37 1 7.2516 -2.1336 -4.4946 38 1 9.3158 -3.6020 -4.7556 39 1 10.1781 -5.6023 -5.8979 40 1 7.6479 -10.8556 -9.5190 41 1 6.1739 -6.8536 -6.7312 42 1 5.3104 -4.8580 -5.5815 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042054546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:36 Heat of formation + Delta-G solvation = -62.259999 kcal Electronic energy + Delta-G solvation = -24788.993581 eV Core-core repulsion = 20928.115059 eV Total energy + Delta-G solvation = -3860.878522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10873 -40.91517 -39.99431 -38.92047 -38.30112 -36.04818 -35.14469 -34.37002 -31.95002 -30.44766 -29.95302 -28.03081 -27.17843 -25.26533 -23.99993 -22.72793 -22.21712 -21.73999 -21.07938 -20.16423 -19.50462 -19.08195 -18.41224 -17.47148 -17.21112 -16.97025 -16.43750 -15.98921 -15.84770 -15.67752 -15.49287 -15.47004 -15.04546 -14.83040 -14.47823 -14.22862 -14.14777 -14.03269 -13.91222 -13.48723 -13.34319 -13.09043 -12.82115 -12.74385 -12.48109 -12.38597 -12.26020 -12.00479 -11.53277 -11.21013 -11.08547 -10.97857 -10.74073 -10.62102 -10.26853 -9.90585 -8.77395 -8.49433 -6.21836 0.02077 0.47713 0.64826 1.20127 1.34014 1.38521 1.54172 2.03679 2.29256 2.48538 2.73961 2.81940 3.00388 3.14649 3.32078 3.57269 3.87286 3.99024 4.03829 4.05646 4.19836 4.41918 4.45231 4.51534 4.54922 4.60048 4.65937 4.87785 4.94633 4.96767 4.96949 5.04897 5.14786 5.21785 5.26145 5.29494 5.37082 5.44189 5.53522 5.72204 5.82321 5.89907 6.13938 6.27581 6.66441 6.83994 6.85965 7.55707 8.61946 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.002022 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.051856 B =13842.378087 C =14525.695258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.139 4.139 3 H 0.112 0.888 4 C -0.171 4.171 5 C -0.175 4.175 6 H 0.116 0.884 7 C 0.150 3.850 8 N -0.686 5.686 9 C 0.519 3.481 10 O -0.537 6.537 11 C 0.499 3.501 12 O -0.530 6.530 13 N -0.619 5.619 14 C 0.057 3.943 15 C -0.072 4.072 16 C -0.166 4.166 17 C 0.118 3.882 18 O -0.237 6.237 19 C -0.401 4.401 20 H 0.079 0.921 21 C 0.009 3.991 22 N -0.923 5.923 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.258 1.258 27 C -0.222 4.222 28 C -0.074 4.074 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.420 0.580 37 H 0.431 0.569 38 H 0.171 0.829 39 H 0.146 0.854 40 H 0.285 0.715 41 H 0.111 0.889 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 22.126 18.078 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 H 0.130 0.870 4 C -0.208 4.208 5 C -0.194 4.194 6 H 0.134 0.866 7 C 0.028 3.972 8 N -0.338 5.338 9 C 0.299 3.701 10 O -0.414 6.414 11 C 0.281 3.719 12 O -0.407 6.407 13 N -0.267 5.267 14 C -0.036 4.036 15 C -0.092 4.092 16 C -0.186 4.186 17 C 0.069 3.931 18 O -0.144 6.144 19 C -0.477 4.477 20 H 0.097 0.903 21 C -0.190 4.190 22 N -0.563 5.563 23 Si 0.795 3.205 24 H -0.191 1.191 25 H -0.194 1.194 26 H -0.182 1.182 27 C -0.242 4.242 28 C -0.094 4.094 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.257 0.743 37 H 0.270 0.730 38 H 0.188 0.812 39 H 0.164 0.836 40 H 0.095 0.905 41 H 0.129 0.871 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.479 21.917 17.978 29.317 hybrid contribution -0.027 -0.818 -0.524 0.972 sum -7.505 21.098 17.454 28.392 Atomic orbital electron populations 1.21409 0.91974 1.02585 1.02294 1.22480 0.95935 0.94598 1.02725 0.86951 1.23350 1.03124 1.01571 0.92774 1.22516 0.97729 1.04181 0.94952 0.86584 1.21126 0.94568 0.87055 0.94462 1.45783 1.22877 1.18445 1.46738 1.19659 0.82488 0.87149 0.80800 1.90767 1.55865 1.31276 1.63512 1.20454 0.82247 0.88580 0.80577 1.90796 1.55139 1.31960 1.62774 1.42789 1.24083 1.12725 1.47063 1.17434 0.92832 0.90955 1.02374 1.20860 0.92945 0.97043 0.98335 1.20385 0.99675 0.94286 1.04250 1.19721 0.92931 0.87265 0.93221 1.83503 1.36484 1.32028 1.62426 1.20697 0.89323 1.08362 1.29294 0.90313 1.25333 1.04649 0.94567 0.94412 1.69740 1.36374 1.17591 1.32587 0.85172 0.77866 0.79240 0.78179 1.19129 1.19392 1.18152 1.21129 0.95244 1.00859 1.06945 1.20922 1.00020 0.93444 0.94992 0.92294 0.91212 0.92015 0.87972 0.88233 0.90560 0.90353 0.74277 0.72955 0.81162 0.83581 0.90543 0.87109 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 10.19 71.98 0.73 -0.19 16 2 C -0.14 -1.17 6.13 -10.79 -0.07 -1.23 16 3 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.17 -1.52 9.82 30.59 0.30 -1.22 16 5 C -0.18 -1.75 5.57 -10.79 -0.06 -1.81 16 6 H 0.12 1.13 8.04 -2.39 -0.02 1.11 16 7 C 0.15 1.96 5.96 86.38 0.51 2.47 16 8 N -0.69 -11.59 5.55 -464.55 -2.58 -14.17 16 9 C 0.52 11.49 7.88 87.23 0.69 12.17 16 10 O -0.54 -13.31 16.48 -3.28 -0.05 -13.37 16 11 C 0.50 13.16 7.73 87.23 0.67 13.83 16 12 O -0.53 -16.92 13.91 -3.37 -0.05 -16.96 16 13 N -0.62 -15.58 5.32 -304.74 -1.62 -17.20 16 14 C 0.06 1.81 6.30 38.24 0.24 2.05 16 15 C -0.07 -2.07 9.96 22.39 0.22 -1.85 16 16 C -0.17 -5.94 9.98 22.37 0.22 -5.72 16 17 C 0.12 5.45 6.65 22.61 0.15 5.60 16 18 O -0.24 -12.67 8.58 -22.48 -0.19 -12.86 16 19 C -0.40 -23.58 9.94 67.92 0.68 -22.90 16 20 H 0.08 4.91 5.43 -2.91 -0.02 4.89 16 21 C 0.01 0.51 5.49 84.83 0.47 0.98 16 22 N -0.92 -55.21 13.96 21.61 0.30 -54.91 16 23 Si 0.97 44.90 28.62 68.60 1.96 46.86 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 27 C -0.22 -10.09 9.16 22.37 0.20 -9.88 16 28 C -0.07 -2.84 8.69 22.39 0.19 -2.65 16 29 H 0.06 0.42 7.90 -2.39 -0.02 0.41 16 30 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.83 8.05 -2.39 -0.02 0.81 16 33 H 0.10 0.85 8.03 -2.39 -0.02 0.83 16 34 H 0.08 1.02 7.87 -2.39 -0.02 1.00 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.42 6.51 7.87 -92.70 -0.73 5.78 16 37 H 0.43 8.41 8.30 -92.71 -0.77 7.64 16 38 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.11 5.57 5.63 -2.91 -0.02 5.56 16 42 H 0.13 4.89 6.22 -2.91 -0.02 4.87 16 Total: -1.00 -70.26 363.51 2.52 -67.74 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.42 Total: 25.21 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.16 Total: -10.34 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -3.90 Total: -86.28 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.29 Total: -43.19 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.96 Total: 46.86 kcal Total: -70.26 2.52 -67.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042054546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.479 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds