Wall clock time and date at job start Tue Mar 31 2020 12:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 115.56077 * 2 1 4 4 C 1.53072 * 117.51114 * 145.70014 * 2 1 3 5 5 C 1.52994 * 117.49805 * 214.30709 * 2 1 3 6 6 H 1.09004 * 117.50112 * 145.00274 * 5 2 1 7 7 C 1.52998 * 117.50037 * 0.02562 * 5 2 1 8 8 N 1.46505 * 109.47333 * 175.08984 * 7 5 2 9 9 C 1.34772 * 120.00175 * 179.97438 * 8 7 5 10 10 O 1.21364 * 119.99886 * 359.72743 * 9 8 7 11 11 C 1.49320 * 119.99985 * 179.97438 * 9 8 7 12 12 O 1.21385 * 120.00021 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00025 * 180.02562 * 11 9 8 14 14 C 1.39741 * 120.00152 * 174.78963 * 13 11 9 15 15 C 1.38990 * 120.00487 * 326.08415 * 14 13 11 16 16 C 1.37972 * 119.99181 * 179.76942 * 15 14 13 17 17 C 1.38935 * 120.00539 * 0.50490 * 16 15 14 18 18 O 1.35755 * 119.99112 * 179.76577 * 17 16 15 19 19 C 1.34802 * 116.99959 * 185.89404 * 18 17 16 20 20 H 1.08002 * 120.00100 * 5.41181 * 19 18 17 21 21 C 1.38655 * 120.00361 * 185.41293 * 19 18 17 22 22 N 1.31562 * 119.99598 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00290 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47329 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47342 * 119.99829 * 23 21 19 26 26 H 1.48507 * 109.47210 * 239.99672 * 23 21 19 27 27 C 1.38937 * 120.01365 * 359.74699 * 17 16 15 28 28 C 1.37966 * 120.00734 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47124 * 205.69120 * 1 2 3 30 30 H 1.08993 * 109.47082 * 325.69551 * 1 2 3 31 31 H 1.09002 * 109.47012 * 85.69342 * 1 2 3 32 32 H 1.09004 * 117.51290 * 359.97438 * 4 2 1 33 33 H 1.09000 * 117.51169 * 214.95779 * 4 2 1 34 34 H 1.08991 * 109.47488 * 55.08769 * 7 5 2 35 35 H 1.09005 * 109.47171 * 295.08271 * 7 5 2 36 36 H 0.97005 * 119.99406 * 0.02562 * 8 7 5 37 37 H 0.97009 * 119.99978 * 354.78362 * 13 11 9 38 38 H 1.07999 * 120.00801 * 0.02562 * 15 14 13 39 39 H 1.08002 * 119.99841 * 180.23738 * 16 15 14 40 40 H 0.97001 * 119.99823 * 180.02562 * 22 21 19 41 41 H 1.08002 * 119.99383 * 180.02562 * 27 17 16 42 42 H 1.08000 * 119.99863 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1215 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 3.1714 -0.8752 -1.2685 7 6 1.3589 -2.1559 -1.4718 8 7 2.2061 -3.0718 -2.2397 9 6 1.6470 -4.0728 -2.9482 10 8 0.4422 -4.2184 -2.9460 11 6 2.5105 -5.0059 -3.7314 12 8 3.7159 -4.8626 -3.7303 13 7 1.9515 -6.0066 -4.4403 14 6 2.7473 -6.8122 -5.2591 15 6 3.8477 -6.2682 -5.9110 16 6 4.6360 -7.0650 -6.7156 17 6 4.3238 -8.4085 -6.8825 18 8 5.0969 -9.1910 -7.6780 19 6 4.6719 -10.4517 -7.8952 20 1 3.7119 -10.7707 -7.5169 21 6 5.4672 -11.3391 -8.6041 22 7 6.6364 -10.9504 -9.0653 23 14 4.8779 -13.0858 -8.9057 24 1 3.5398 -13.2703 -8.2889 25 1 4.7881 -13.3326 -10.3673 26 1 5.8378 -14.0436 -8.3001 27 6 3.2208 -8.9513 -6.2351 28 6 2.4348 -8.1561 -5.4267 29 1 -0.3633 -0.9260 0.4455 30 1 -0.3633 0.8489 0.5791 31 1 -0.3633 0.0772 -1.0248 32 1 1.6123 -1.8591 1.2687 33 1 3.1724 -0.8760 1.2681 34 1 0.6691 -1.6479 -2.1456 35 1 0.7932 -2.7200 -0.7301 36 1 3.1694 -2.9582 -2.2377 37 1 0.9966 -6.1676 -4.3820 38 1 4.0882 -5.2230 -5.7845 39 1 5.4934 -6.6433 -7.2191 40 1 7.1927 -11.5711 -9.5616 41 1 2.9786 -9.9958 -6.3648 42 1 1.5777 -8.5783 -4.9232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042054548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:44 Heat of formation + Delta-G solvation = -43.836852 kcal Electronic energy + Delta-G solvation = -24820.467376 eV Core-core repulsion = 20960.387742 eV Total energy + Delta-G solvation = -3860.079634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.89570 -39.47668 -38.72051 -38.18442 -36.62252 -34.92794 -33.84858 -32.23299 -30.29813 -29.29000 -28.51407 -27.59192 -25.50805 -24.11362 -22.33602 -22.05820 -21.30287 -20.63034 -19.94729 -18.55073 -18.01653 -17.42720 -16.96604 -16.38205 -16.16337 -16.00290 -15.15038 -14.77085 -14.61057 -14.35914 -14.23736 -13.99508 -13.67788 -13.56335 -13.49486 -13.24358 -12.87701 -12.68041 -12.56662 -12.02189 -11.97221 -11.72972 -11.70202 -11.66119 -11.50767 -11.11172 -10.70738 -10.56876 -10.46915 -10.42888 -9.83064 -9.61145 -9.48404 -9.30316 -8.77457 -8.28056 -7.01223 -6.49334 -4.06860 1.23359 2.12633 2.15827 2.33588 3.09202 3.11911 3.17545 3.19024 3.23011 3.62229 3.93505 4.08424 4.32415 4.32971 4.43061 4.52532 4.72440 4.83165 5.06195 5.08126 5.23809 5.24457 5.33861 5.35150 5.37883 5.50530 5.55019 5.65915 5.69029 5.81421 5.95159 6.03042 6.12787 6.15837 6.69096 6.71617 6.78819 6.96823 7.04792 7.16608 7.32253 7.46421 7.65310 7.71294 7.94967 8.07401 8.95981 9.65285 10.68402 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.044684 B = 0.001912 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.469717 B =14639.698267 C =14984.145294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 H 0.108 0.892 4 C -0.172 4.172 5 C -0.171 4.171 6 H 0.114 0.886 7 C 0.150 3.850 8 N -0.700 5.700 9 C 0.511 3.489 10 O -0.523 6.523 11 C 0.496 3.504 12 O -0.509 6.509 13 N -0.624 5.624 14 C 0.026 3.974 15 C -0.064 4.064 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.219 4.219 28 C -0.082 4.082 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.414 0.586 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.270 0.730 41 H 0.134 0.866 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 17.762 16.043 26.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.209 4.209 5 C -0.190 4.190 6 H 0.132 0.868 7 C 0.027 3.973 8 N -0.354 5.354 9 C 0.292 3.708 10 O -0.399 6.399 11 C 0.277 3.723 12 O -0.384 6.384 13 N -0.270 5.270 14 C -0.067 4.067 15 C -0.084 4.084 16 C -0.198 4.198 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.239 4.239 28 C -0.102 4.102 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.250 0.750 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.151 0.849 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.609 17.722 15.790 25.999 hybrid contribution -0.254 -0.911 -0.012 0.946 sum -10.862 16.811 15.778 25.486 Atomic orbital electron populations 1.21407 0.92532 1.02334 1.02285 1.22397 0.95663 0.94382 1.03575 0.87405 1.23262 1.02849 1.01520 0.93259 1.22540 1.01660 1.00124 0.94649 0.86826 1.20972 0.92230 0.89424 0.94649 1.45734 1.12052 1.29622 1.47953 1.20164 0.88089 0.82047 0.80488 1.90761 1.14396 1.72110 1.62603 1.19984 0.88154 0.82996 0.81156 1.90789 1.13941 1.71569 1.62132 1.42879 1.11963 1.30038 1.42080 1.17215 0.98181 0.90386 1.00877 1.20577 0.93925 0.99288 0.94577 1.20102 1.03046 0.91552 1.05063 1.19450 0.90299 0.91123 0.89589 1.83994 1.44133 1.23533 1.55941 1.21387 1.03941 0.85283 1.36184 0.88919 1.25317 0.95176 0.99843 0.96217 1.70051 1.09767 1.35926 1.33619 0.85632 0.78821 0.80360 0.78523 1.19053 1.20104 1.20121 1.20993 0.98585 1.00881 1.03407 1.20503 0.99665 0.90967 0.99052 0.92221 0.91884 0.91823 0.88378 0.88441 0.90444 0.90751 0.74879 0.74982 0.85791 0.85922 0.91972 0.84887 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.63 9.20 37.16 0.34 -0.29 16 2 C -0.14 -0.73 6.41 -90.58 -0.58 -1.32 16 3 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.17 -0.93 9.83 -26.70 -0.26 -1.19 16 5 C -0.17 -1.02 5.84 -90.63 -0.53 -1.55 16 6 H 0.11 0.63 8.04 -51.93 -0.42 0.21 16 7 C 0.15 1.17 5.03 -4.04 -0.02 1.15 16 8 N -0.70 -6.73 5.55 -60.77 -0.34 -7.06 16 9 C 0.51 6.39 7.88 -11.65 -0.09 6.29 16 10 O -0.52 -7.36 16.48 5.48 0.09 -7.27 16 11 C 0.50 7.22 7.62 -11.65 -0.09 7.14 16 12 O -0.51 -8.51 14.19 5.47 0.08 -8.43 16 13 N -0.62 -9.19 5.32 -10.27 -0.05 -9.24 16 14 C 0.03 0.46 6.27 -83.69 -0.52 -0.07 16 15 C -0.06 -1.22 8.64 -39.40 -0.34 -1.56 16 16 C -0.18 -3.81 9.98 -39.42 -0.39 -4.21 16 17 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 18 O -0.17 -4.87 9.75 0.11 0.00 -4.87 16 19 C -0.39 -10.74 9.44 30.89 0.29 -10.45 16 20 H 0.09 2.33 5.29 -52.49 -0.28 2.06 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -24.89 13.67 55.48 0.76 -24.14 16 23 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 27 C -0.22 -4.62 9.12 -39.42 -0.36 -4.98 16 28 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 29 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 7.84 -51.93 -0.41 -0.09 16 32 H 0.10 0.53 7.94 -51.93 -0.41 0.12 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.62 7.77 -51.93 -0.40 0.22 16 35 H 0.07 0.60 7.88 -51.93 -0.41 0.19 16 36 H 0.41 3.60 7.87 -40.82 -0.32 3.28 16 37 H 0.41 5.16 8.30 -40.82 -0.34 4.82 16 38 H 0.12 2.25 6.45 -52.49 -0.34 1.91 16 39 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -32.02 363.04 -7.61 -39.62 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.28 Total: 9.37 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -3.31 Total: -8.62 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.37 Total: -40.44 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.17 Total: -20.56 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.02 -7.61 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042054548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.213 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds