Wall clock time and date at job start Tue Mar 31 2020 12:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 115.56077 * 2 1 4 4 C 1.53072 * 117.51114 * 145.70014 * 2 1 3 5 5 C 1.52994 * 117.49805 * 214.30709 * 2 1 3 6 6 H 1.09004 * 117.50112 * 145.00274 * 5 2 1 7 7 C 1.52998 * 117.50037 * 0.02562 * 5 2 1 8 8 N 1.46505 * 109.47333 * 175.08984 * 7 5 2 9 9 C 1.34772 * 120.00175 * 179.97438 * 8 7 5 10 10 O 1.21364 * 119.99886 * 359.72743 * 9 8 7 11 11 C 1.49320 * 119.99985 * 179.97438 * 9 8 7 12 12 O 1.21385 * 120.00021 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00025 * 180.02562 * 11 9 8 14 14 C 1.39741 * 120.00152 * 174.78963 * 13 11 9 15 15 C 1.38990 * 120.00487 * 326.08415 * 14 13 11 16 16 C 1.37972 * 119.99181 * 179.76942 * 15 14 13 17 17 C 1.38935 * 120.00539 * 0.50490 * 16 15 14 18 18 O 1.35755 * 119.99112 * 179.76577 * 17 16 15 19 19 C 1.34802 * 116.99959 * 185.89404 * 18 17 16 20 20 H 1.08002 * 120.00100 * 5.41181 * 19 18 17 21 21 C 1.38655 * 120.00361 * 185.41293 * 19 18 17 22 22 N 1.31562 * 119.99598 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00290 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47329 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47342 * 119.99829 * 23 21 19 26 26 H 1.48507 * 109.47210 * 239.99672 * 23 21 19 27 27 C 1.38937 * 120.01365 * 359.74699 * 17 16 15 28 28 C 1.37966 * 120.00734 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47124 * 205.69120 * 1 2 3 30 30 H 1.08993 * 109.47082 * 325.69551 * 1 2 3 31 31 H 1.09002 * 109.47012 * 85.69342 * 1 2 3 32 32 H 1.09004 * 117.51290 * 359.97438 * 4 2 1 33 33 H 1.09000 * 117.51169 * 214.95779 * 4 2 1 34 34 H 1.08991 * 109.47488 * 55.08769 * 7 5 2 35 35 H 1.09005 * 109.47171 * 295.08271 * 7 5 2 36 36 H 0.97005 * 119.99406 * 0.02562 * 8 7 5 37 37 H 0.97009 * 119.99978 * 354.78362 * 13 11 9 38 38 H 1.07999 * 120.00801 * 0.02562 * 15 14 13 39 39 H 1.08002 * 119.99841 * 180.23738 * 16 15 14 40 40 H 0.97001 * 119.99823 * 180.02562 * 22 21 19 41 41 H 1.08002 * 119.99383 * 180.02562 * 27 17 16 42 42 H 1.08000 * 119.99863 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1215 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 3.1714 -0.8752 -1.2685 7 6 1.3589 -2.1559 -1.4718 8 7 2.2061 -3.0718 -2.2397 9 6 1.6470 -4.0728 -2.9482 10 8 0.4422 -4.2184 -2.9460 11 6 2.5105 -5.0059 -3.7314 12 8 3.7159 -4.8626 -3.7303 13 7 1.9515 -6.0066 -4.4403 14 6 2.7473 -6.8122 -5.2591 15 6 3.8477 -6.2682 -5.9110 16 6 4.6360 -7.0650 -6.7156 17 6 4.3238 -8.4085 -6.8825 18 8 5.0969 -9.1910 -7.6780 19 6 4.6719 -10.4517 -7.8952 20 1 3.7119 -10.7707 -7.5169 21 6 5.4672 -11.3391 -8.6041 22 7 6.6364 -10.9504 -9.0653 23 14 4.8779 -13.0858 -8.9057 24 1 3.5398 -13.2703 -8.2889 25 1 4.7881 -13.3326 -10.3673 26 1 5.8378 -14.0436 -8.3001 27 6 3.2208 -8.9513 -6.2351 28 6 2.4348 -8.1561 -5.4267 29 1 -0.3633 -0.9260 0.4455 30 1 -0.3633 0.8489 0.5791 31 1 -0.3633 0.0772 -1.0248 32 1 1.6123 -1.8591 1.2687 33 1 3.1724 -0.8760 1.2681 34 1 0.6691 -1.6479 -2.1456 35 1 0.7932 -2.7200 -0.7301 36 1 3.1694 -2.9582 -2.2377 37 1 0.9966 -6.1676 -4.3820 38 1 4.0882 -5.2230 -5.7845 39 1 5.4934 -6.6433 -7.2191 40 1 7.1927 -11.5711 -9.5616 41 1 2.9786 -9.9958 -6.3648 42 1 1.5777 -8.5783 -4.9232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042054548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:43 Heat of formation + Delta-G solvation = -65.578508 kcal Electronic energy + Delta-G solvation = -24821.410165 eV Core-core repulsion = 20960.387742 eV Total energy + Delta-G solvation = -3861.022423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08377 -40.83752 -39.95945 -38.98119 -38.21467 -35.99776 -35.10237 -34.15879 -31.92869 -30.12836 -29.59016 -28.45849 -27.37913 -25.31723 -23.94314 -22.77608 -22.50581 -21.56066 -20.89466 -19.90051 -19.46786 -18.97618 -18.20083 -17.53486 -17.18459 -17.08026 -16.38758 -16.15515 -16.00092 -15.62524 -15.47047 -15.30032 -14.92477 -14.63463 -14.57631 -14.34351 -14.12846 -13.82596 -13.61673 -13.38106 -13.29602 -13.10827 -12.85003 -12.73832 -12.44662 -12.37723 -12.15692 -12.07399 -11.46231 -11.15253 -11.06970 -10.95554 -10.68233 -10.58990 -10.26207 -9.88952 -8.68994 -8.46354 -6.13276 0.03228 0.49832 0.70786 1.21214 1.38121 1.45867 1.56323 2.05273 2.18808 2.50476 2.80055 2.83393 3.14629 3.33491 3.48105 3.59794 3.88434 3.91632 4.01806 4.08372 4.22111 4.44269 4.46073 4.53377 4.55048 4.64882 4.65489 4.89913 4.93839 4.98004 5.03160 5.05225 5.11738 5.22693 5.23345 5.27041 5.36449 5.43580 5.46066 5.63036 5.86556 6.01750 6.08765 6.29468 6.67602 6.86812 6.98274 7.77410 8.76850 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.044684 B = 0.001912 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.469717 B =14639.698267 C =14984.145294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.137 4.137 3 H 0.117 0.883 4 C -0.172 4.172 5 C -0.176 4.176 6 H 0.120 0.880 7 C 0.150 3.850 8 N -0.685 5.685 9 C 0.518 3.482 10 O -0.538 6.538 11 C 0.500 3.500 12 O -0.529 6.529 13 N -0.620 5.620 14 C 0.052 3.948 15 C -0.066 4.066 16 C -0.186 4.186 17 C 0.113 3.887 18 O -0.227 6.227 19 C -0.412 4.412 20 H 0.107 0.893 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.020 2.980 24 H -0.248 1.248 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.219 4.219 28 C -0.074 4.074 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.420 0.580 37 H 0.429 0.571 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.272 0.728 41 H 0.134 0.866 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 18.654 18.197 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.156 4.156 3 H 0.135 0.865 4 C -0.209 4.209 5 C -0.195 4.195 6 H 0.138 0.862 7 C 0.028 3.972 8 N -0.338 5.338 9 C 0.298 3.702 10 O -0.415 6.415 11 C 0.282 3.718 12 O -0.405 6.405 13 N -0.267 5.267 14 C -0.041 4.041 15 C -0.086 4.086 16 C -0.206 4.206 17 C 0.062 3.938 18 O -0.133 6.133 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.839 3.161 24 H -0.171 1.171 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.239 4.239 28 C -0.093 4.093 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.258 0.742 37 H 0.268 0.732 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.151 0.849 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.068 18.684 18.004 29.052 hybrid contribution 0.352 -0.827 -0.428 0.995 sum -12.716 17.858 17.576 28.099 Atomic orbital electron populations 1.21434 0.92409 1.02606 1.02308 1.22484 0.95812 0.94585 1.02699 0.86515 1.23323 1.03240 1.01591 0.92762 1.22499 1.01808 1.00199 0.94967 0.86231 1.21089 0.92302 0.89355 0.94442 1.45771 1.12644 1.28667 1.46696 1.19687 0.87436 0.82317 0.80737 1.90769 1.14692 1.72680 1.63406 1.20404 0.88086 0.82635 0.80632 1.90793 1.15084 1.71910 1.62719 1.42822 1.12475 1.29735 1.41679 1.17335 0.97000 0.90705 0.99090 1.20722 0.94169 0.99606 0.94130 1.20248 1.03540 0.91201 1.05562 1.19918 0.91438 0.91738 0.90728 1.83961 1.46228 1.24372 1.58777 1.21907 1.04796 0.85498 1.36596 0.87573 1.26615 0.95192 1.04592 0.95716 1.70199 1.11739 1.37871 1.35949 0.84508 0.79004 0.73995 0.78581 1.17103 1.19518 1.19583 1.21128 0.98031 1.01390 1.03365 1.20835 1.00101 0.90569 0.97835 0.92474 0.91069 0.92009 0.88466 0.87738 0.90457 0.90795 0.74199 0.73210 0.84603 0.86324 0.91847 0.84861 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.20 71.98 0.66 -0.36 16 2 C -0.14 -1.11 6.41 -10.77 -0.07 -1.18 16 3 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.17 -1.48 9.83 30.62 0.30 -1.18 16 5 C -0.18 -1.70 5.84 -10.80 -0.06 -1.77 16 6 H 0.12 1.03 8.04 -2.39 -0.02 1.01 16 7 C 0.15 2.00 5.03 86.38 0.43 2.43 16 8 N -0.68 -11.52 5.55 -464.54 -2.58 -14.10 16 9 C 0.52 11.60 7.88 87.23 0.69 12.29 16 10 O -0.54 -13.70 16.48 -3.29 -0.05 -13.75 16 11 C 0.50 13.25 7.62 87.23 0.66 13.92 16 12 O -0.53 -16.52 14.19 -3.35 -0.05 -16.57 16 13 N -0.62 -16.29 5.32 -304.76 -1.62 -17.91 16 14 C 0.05 1.71 6.27 38.24 0.24 1.95 16 15 C -0.07 -2.48 8.64 22.39 0.19 -2.28 16 16 C -0.19 -8.14 9.98 22.37 0.22 -7.92 16 17 C 0.11 5.55 6.65 22.60 0.15 5.70 16 18 O -0.23 -13.48 9.75 -22.51 -0.22 -13.70 16 19 C -0.41 -23.43 9.44 67.92 0.64 -22.79 16 20 H 0.11 5.44 5.29 -2.91 -0.02 5.43 16 21 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 22 N -0.92 -55.99 13.67 21.61 0.30 -55.70 16 23 Si 1.02 42.05 29.55 68.60 2.03 44.07 16 24 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 C -0.22 -9.15 9.12 22.37 0.20 -8.95 16 28 C -0.07 -2.44 9.96 22.39 0.22 -2.21 16 29 H 0.06 0.47 7.90 -2.39 -0.02 0.46 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.51 7.84 -2.39 -0.02 0.49 16 32 H 0.10 0.86 7.94 -2.39 -0.02 0.84 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 1.07 7.77 -2.39 -0.02 1.06 16 35 H 0.07 1.03 7.88 -2.38 -0.02 1.01 16 36 H 0.42 6.29 7.87 -92.70 -0.73 5.56 16 37 H 0.43 9.09 8.30 -92.70 -0.77 8.32 16 38 H 0.14 4.74 6.45 -2.91 -0.02 4.72 16 39 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.13 5.50 5.71 -2.91 -0.02 5.48 16 42 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -72.24 363.04 2.34 -69.89 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.42 Total: 30.96 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 4.96 Total: -13.20 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -3.90 Total: -87.71 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.32 Total: -44.02 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.24 2.34 -69.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042054548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.315 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds