Wall clock time and date at job start Tue Mar 31 2020 13:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21275 * 120.00004 * 2 1 4 4 N 1.34778 * 120.00003 * 180.02562 * 2 1 3 5 5 C 1.47430 * 125.64305 * 359.95570 * 4 2 1 6 6 C 1.54917 * 104.82779 * 204.16708 * 5 4 2 7 7 C 1.55164 * 101.57930 * 322.98803 * 6 5 4 8 8 C 1.47017 * 125.64985 * 179.97438 * 4 2 1 9 9 H 1.08993 * 109.88416 * 298.47797 * 8 4 2 10 10 C 1.50697 * 109.88207 * 59.48995 * 8 4 2 11 11 O 1.21287 * 120.00310 * 18.54147 * 10 8 4 12 12 N 1.34771 * 120.00138 * 198.54875 * 10 8 4 13 13 C 1.39927 * 120.00432 * 175.48739 * 12 10 8 14 14 C 1.38968 * 120.03554 * 35.13536 * 13 12 10 15 15 C 1.38158 * 120.06546 * 179.72548 * 14 13 12 16 16 C 1.38164 * 120.13727 * 0.51369 * 15 14 13 17 17 C 1.38905 * 120.07381 * 359.48391 * 16 15 14 18 18 O 1.35749 * 120.03496 * 180.27920 * 17 16 15 19 19 C 1.34828 * 117.00485 * 174.66838 * 18 17 16 20 20 H 1.08001 * 119.99668 * 5.03286 * 19 18 17 21 21 C 1.38650 * 120.00749 * 185.03518 * 19 18 17 22 22 N 1.31564 * 119.99377 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00480 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.46977 * 90.00079 * 23 21 19 25 25 H 1.48497 * 109.47056 * 210.00433 * 23 21 19 26 26 H 1.48502 * 109.46887 * 329.99886 * 23 21 19 27 27 C 1.38713 * 120.03641 * 215.11821 * 13 12 10 28 28 H 1.09006 * 109.46976 * 269.99747 * 1 2 3 29 29 H 1.09000 * 109.47164 * 29.99232 * 1 2 3 30 30 H 1.09002 * 109.47787 * 149.99451 * 1 2 3 31 31 H 1.08996 * 110.36797 * 322.99956 * 5 4 2 32 32 H 1.09002 * 110.36899 * 85.21966 * 5 4 2 33 33 H 1.08989 * 111.00481 * 81.06381 * 6 5 4 34 34 H 1.09001 * 111.00098 * 204.88180 * 6 5 4 35 35 H 1.08996 * 110.72250 * 277.14009 * 7 6 5 36 36 H 1.08995 * 110.71537 * 153.86694 * 7 6 5 37 37 H 0.97007 * 120.00301 * 355.48190 * 12 10 8 38 38 H 1.08001 * 119.96051 * 0.02562 * 14 13 12 39 39 H 1.08003 * 119.92622 * 180.25512 * 15 14 13 40 40 H 1.08005 * 119.95889 * 179.76996 * 16 15 14 41 41 H 0.97001 * 119.99504 * 179.97438 * 22 21 19 42 42 H 1.07992 * 120.07186 * 0.03892 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5728 -2.5103 -0.0002 6 6 2.6545 -3.4350 0.6121 7 6 3.9548 -2.8233 0.0269 8 6 3.6439 -1.3120 -0.0011 9 1 4.0606 -0.8619 -0.9021 10 6 4.2252 -0.6467 1.2197 11 8 3.5160 -0.4021 2.1728 12 7 5.5331 -0.3233 1.2526 13 6 6.0532 0.3785 2.3457 14 6 5.5604 0.1408 3.6231 15 6 6.0773 0.8293 4.7036 16 6 7.0779 1.7635 4.5166 17 6 7.5749 2.0056 3.2423 18 8 8.5619 2.9195 3.0602 19 6 9.0751 3.0271 1.8180 20 1 8.6448 2.4610 1.0052 21 6 10.1553 3.8644 1.5842 22 7 10.6791 4.5543 2.5743 23 14 10.8667 4.0128 -0.1367 24 1 10.1775 5.1085 -0.8643 25 1 12.3181 4.3137 -0.0480 26 1 10.6699 2.7341 -0.8656 27 6 7.0614 1.3120 2.1555 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3635 -0.8899 -0.5139 31 1 0.6734 -2.5194 0.6154 32 1 1.3381 -2.8207 -1.0184 33 1 2.6496 -3.3746 1.7003 34 1 2.5222 -4.4645 0.2794 35 1 4.1379 -3.1978 -0.9802 36 1 4.8048 -3.0304 0.6769 37 1 6.1142 -0.5772 0.5184 38 1 4.7758 -0.5864 3.7719 39 1 5.6955 0.6398 5.6960 40 1 7.4774 2.3028 5.3629 41 1 11.4350 5.1398 2.4108 42 1 7.4459 1.4987 1.1638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049294071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:18 Heat of formation + Delta-G solvation = -58.288864 kcal Electronic energy + Delta-G solvation = -26501.106124 eV Core-core repulsion = 22640.399804 eV Total energy + Delta-G solvation = -3860.706320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.96075 -39.47451 -38.45355 -37.38554 -36.22781 -34.20469 -32.35935 -32.18018 -30.58410 -29.49745 -28.94092 -28.17278 -25.30452 -24.30249 -22.68643 -21.78404 -21.62525 -20.24826 -19.35393 -18.02430 -17.82858 -17.29457 -17.03793 -16.05453 -15.51893 -15.26226 -15.11848 -14.86817 -14.52431 -14.18578 -14.04703 -13.81896 -13.68185 -13.50351 -13.21647 -13.06097 -12.90047 -12.70874 -12.35742 -12.24998 -11.82004 -11.67233 -11.64334 -11.47332 -11.44597 -11.08950 -10.95869 -10.73252 -10.42623 -9.99752 -9.86488 -9.56014 -9.41985 -8.83542 -8.76538 -7.68613 -7.11958 -6.41337 -4.00920 2.02318 2.40853 2.43659 2.65664 2.90821 3.14493 3.15303 3.19509 3.35224 3.99126 4.04986 4.11811 4.49073 4.60186 4.61023 4.70685 4.83892 4.97515 5.04872 5.13566 5.17640 5.19639 5.30286 5.32346 5.39663 5.46463 5.58061 5.72860 5.75664 5.93875 6.04577 6.11602 6.29361 6.32791 6.67773 7.01334 7.03614 7.16705 7.27095 7.35122 7.46719 7.73525 7.85888 8.03091 8.04811 8.36077 9.04131 9.74841 10.76862 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.003227 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.654518 B = 8675.941392 C = 9211.443592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.529 3.471 3 O -0.529 6.529 4 N -0.605 5.605 5 C 0.102 3.898 6 C -0.133 4.133 7 C -0.122 4.122 8 C 0.119 3.881 9 H 0.099 0.901 10 C 0.509 3.491 11 O -0.507 6.507 12 N -0.668 5.668 13 C 0.181 3.819 14 C -0.204 4.204 15 C -0.066 4.066 16 C -0.200 4.200 17 C 0.168 3.832 18 O -0.177 6.177 19 C -0.392 4.392 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.255 4.255 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.405 0.595 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.269 0.731 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.907 -18.565 -7.983 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.318 3.682 3 O -0.403 6.403 4 N -0.341 5.341 5 C -0.021 4.021 6 C -0.171 4.171 7 C -0.160 4.160 8 C 0.011 3.989 9 H 0.117 0.883 10 C 0.294 3.706 11 O -0.380 6.380 12 N -0.312 5.312 13 C 0.088 3.912 14 C -0.225 4.225 15 C -0.084 4.084 16 C -0.219 4.219 17 C 0.114 3.886 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.276 4.276 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.240 0.760 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.904 -17.392 -7.154 25.286 hybrid contribution 0.666 0.013 -1.327 1.484 sum -16.239 -17.379 -8.481 25.251 Atomic orbital electron populations 1.21856 0.91095 1.04605 1.04907 1.20526 0.90407 0.81946 0.75280 1.90796 1.70478 1.30527 1.48547 1.48319 1.04890 1.06384 1.74537 1.22358 0.97185 0.81551 1.00961 1.22812 0.93533 0.99016 1.01735 1.22647 0.99327 0.90880 1.03168 1.21497 0.83039 0.97332 0.97071 0.88336 1.20758 0.81791 0.78826 0.89243 1.90681 1.59273 1.51730 1.36311 1.43401 1.09434 1.56185 1.22229 1.17409 0.94818 0.92791 0.86182 1.20634 1.05060 1.06053 0.90771 1.20541 0.95073 0.95130 0.97700 1.20250 1.02488 1.04073 0.95132 1.19059 0.88865 0.88084 0.92591 1.84001 1.43649 1.47982 1.32394 1.21279 1.13973 1.27858 0.83691 0.89261 1.25270 0.95755 0.95793 0.99663 1.70045 1.22969 1.25569 1.31257 0.85726 0.78364 0.79009 0.80387 1.19902 1.20257 1.19284 1.20827 1.04292 1.02328 1.00187 0.88671 0.88827 0.90314 0.90157 0.90881 0.89982 0.89217 0.89072 0.89262 0.76014 0.86078 0.86694 0.86404 0.92064 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.67 36.00 0.35 -1.04 16 2 C 0.53 7.18 7.30 -10.99 -0.08 7.10 16 3 O -0.53 -10.13 16.72 5.56 0.09 -10.03 16 4 N -0.61 -6.69 2.79 -164.32 -0.46 -7.15 16 5 C 0.10 0.65 6.27 -2.52 -0.02 0.63 16 6 C -0.13 -0.79 7.09 -24.57 -0.17 -0.97 16 7 C -0.12 -0.84 6.48 -24.89 -0.16 -1.01 16 8 C 0.12 1.33 3.30 -68.11 -0.22 1.11 16 9 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 10 C 0.51 8.12 6.03 -10.99 -0.07 8.05 16 11 O -0.51 -9.94 13.41 5.55 0.07 -9.86 16 12 N -0.67 -10.81 5.33 -9.88 -0.05 -10.86 16 13 C 0.18 3.69 6.29 -83.72 -0.53 3.16 16 14 C -0.20 -4.15 8.69 -39.34 -0.34 -4.50 16 15 C -0.07 -1.31 10.03 -39.64 -0.40 -1.70 16 16 C -0.20 -4.49 9.99 -39.36 -0.39 -4.89 16 17 C 0.17 4.25 6.65 -39.14 -0.26 3.99 16 18 O -0.18 -5.19 9.76 0.06 0.00 -5.18 16 19 C -0.39 -11.17 9.49 30.88 0.29 -10.87 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 23 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.25 -5.83 9.08 -39.21 -0.36 -6.18 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.41 7.18 -51.93 -0.37 0.04 16 31 H 0.08 0.42 7.55 -51.93 -0.39 0.03 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.63 8.14 -51.94 -0.42 0.21 16 34 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.64 7.82 -51.93 -0.41 0.23 16 37 H 0.41 5.13 8.82 -40.82 -0.36 4.77 16 38 H 0.12 2.40 6.23 -52.49 -0.33 2.07 16 39 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 40 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.13 2.90 5.63 -52.49 -0.30 2.60 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -38.67 354.24 -7.09 -45.76 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.37 Total: 7.30 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.45 Total: -6.11 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.25 Total: -42.99 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.17 Total: -25.08 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.67 -7.09 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.534 kcal (2) G-P(sol) polarization free energy of solvation -38.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds