Wall clock time and date at job start Tue Mar 31 2020 13:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21275 * 120.00004 * 2 1 4 4 N 1.34778 * 120.00003 * 180.02562 * 2 1 3 5 5 C 1.47430 * 125.64305 * 359.95570 * 4 2 1 6 6 C 1.54917 * 104.82779 * 204.16708 * 5 4 2 7 7 C 1.55164 * 101.57930 * 322.98803 * 6 5 4 8 8 C 1.47017 * 125.64985 * 179.97438 * 4 2 1 9 9 H 1.08993 * 109.88416 * 298.47797 * 8 4 2 10 10 C 1.50697 * 109.88207 * 59.48995 * 8 4 2 11 11 O 1.21287 * 120.00310 * 18.54147 * 10 8 4 12 12 N 1.34771 * 120.00138 * 198.54875 * 10 8 4 13 13 C 1.39927 * 120.00432 * 175.48739 * 12 10 8 14 14 C 1.38968 * 120.03554 * 35.13536 * 13 12 10 15 15 C 1.38158 * 120.06546 * 179.72548 * 14 13 12 16 16 C 1.38164 * 120.13727 * 0.51369 * 15 14 13 17 17 C 1.38905 * 120.07381 * 359.48391 * 16 15 14 18 18 O 1.35749 * 120.03496 * 180.27920 * 17 16 15 19 19 C 1.34828 * 117.00485 * 174.66838 * 18 17 16 20 20 H 1.08001 * 119.99668 * 5.03286 * 19 18 17 21 21 C 1.38650 * 120.00749 * 185.03518 * 19 18 17 22 22 N 1.31564 * 119.99377 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00480 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.46977 * 90.00079 * 23 21 19 25 25 H 1.48497 * 109.47056 * 210.00433 * 23 21 19 26 26 H 1.48502 * 109.46887 * 329.99886 * 23 21 19 27 27 C 1.38713 * 120.03641 * 215.11821 * 13 12 10 28 28 H 1.09006 * 109.46976 * 269.99747 * 1 2 3 29 29 H 1.09000 * 109.47164 * 29.99232 * 1 2 3 30 30 H 1.09002 * 109.47787 * 149.99451 * 1 2 3 31 31 H 1.08996 * 110.36797 * 322.99956 * 5 4 2 32 32 H 1.09002 * 110.36899 * 85.21966 * 5 4 2 33 33 H 1.08989 * 111.00481 * 81.06381 * 6 5 4 34 34 H 1.09001 * 111.00098 * 204.88180 * 6 5 4 35 35 H 1.08996 * 110.72250 * 277.14009 * 7 6 5 36 36 H 1.08995 * 110.71537 * 153.86694 * 7 6 5 37 37 H 0.97007 * 120.00301 * 355.48190 * 12 10 8 38 38 H 1.08001 * 119.96051 * 0.02562 * 14 13 12 39 39 H 1.08003 * 119.92622 * 180.25512 * 15 14 13 40 40 H 1.08005 * 119.95889 * 179.76996 * 16 15 14 41 41 H 0.97001 * 119.99504 * 179.97438 * 22 21 19 42 42 H 1.07992 * 120.07186 * 0.03892 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5728 -2.5103 -0.0002 6 6 2.6545 -3.4350 0.6121 7 6 3.9548 -2.8233 0.0269 8 6 3.6439 -1.3120 -0.0011 9 1 4.0606 -0.8619 -0.9021 10 6 4.2252 -0.6467 1.2197 11 8 3.5160 -0.4021 2.1728 12 7 5.5331 -0.3233 1.2526 13 6 6.0532 0.3785 2.3457 14 6 5.5604 0.1408 3.6231 15 6 6.0773 0.8293 4.7036 16 6 7.0779 1.7635 4.5166 17 6 7.5749 2.0056 3.2423 18 8 8.5619 2.9195 3.0602 19 6 9.0751 3.0271 1.8180 20 1 8.6448 2.4610 1.0052 21 6 10.1553 3.8644 1.5842 22 7 10.6791 4.5543 2.5743 23 14 10.8667 4.0128 -0.1367 24 1 10.1775 5.1085 -0.8643 25 1 12.3181 4.3137 -0.0480 26 1 10.6699 2.7341 -0.8656 27 6 7.0614 1.3120 2.1555 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3635 -0.8899 -0.5139 31 1 0.6734 -2.5194 0.6154 32 1 1.3381 -2.8207 -1.0184 33 1 2.6496 -3.3746 1.7003 34 1 2.5222 -4.4645 0.2794 35 1 4.1379 -3.1978 -0.9802 36 1 4.8048 -3.0304 0.6769 37 1 6.1142 -0.5772 0.5184 38 1 4.7758 -0.5864 3.7719 39 1 5.6955 0.6398 5.6960 40 1 7.4774 2.3028 5.3629 41 1 11.4350 5.1398 2.4108 42 1 7.4459 1.4987 1.1638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049294071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:17 Heat of formation + Delta-G solvation = -86.766684 kcal Electronic energy + Delta-G solvation = -26502.341015 eV Core-core repulsion = 22640.399804 eV Total energy + Delta-G solvation = -3861.941211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07414 -40.94260 -40.01061 -38.49648 -37.82158 -35.72531 -34.27124 -33.16725 -31.54997 -30.87738 -30.28691 -29.38244 -27.34589 -25.20715 -23.81677 -23.54778 -22.60911 -21.52407 -20.46246 -19.77748 -19.30153 -18.58565 -18.11573 -17.32217 -16.89778 -16.75927 -16.35845 -16.28979 -15.87705 -15.73543 -15.57262 -15.29634 -14.92031 -14.62030 -14.43885 -14.21667 -13.87718 -13.74667 -13.59756 -13.34095 -13.23985 -13.07645 -12.85455 -12.73597 -12.48048 -12.36048 -12.13926 -12.12834 -11.98348 -11.47866 -11.27907 -11.05296 -10.91386 -10.75322 -9.78232 -9.40519 -8.94129 -8.49100 -6.18433 0.35162 0.64779 1.33355 1.35194 1.43332 1.51454 1.59451 1.88717 2.14766 2.17124 2.79448 3.12146 3.39497 3.44771 3.50263 3.62400 3.85807 4.02167 4.06970 4.24925 4.27915 4.39781 4.43018 4.49040 4.58050 4.58793 4.68527 4.71287 4.83287 4.87894 4.95707 4.97465 5.06289 5.07844 5.19818 5.30128 5.35775 5.43269 5.60958 5.62243 5.98721 6.12373 6.35229 6.46622 6.94739 7.03363 7.12393 7.73314 8.73931 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.003227 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.654518 B = 8675.941392 C = 9211.443592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.513 3.487 3 O -0.601 6.601 4 N -0.606 5.606 5 C 0.095 3.905 6 C -0.129 4.129 7 C -0.113 4.113 8 C 0.115 3.885 9 H 0.105 0.895 10 C 0.504 3.496 11 O -0.547 6.547 12 N -0.662 5.662 13 C 0.185 3.815 14 C -0.200 4.200 15 C -0.053 4.053 16 C -0.213 4.213 17 C 0.135 3.865 18 O -0.225 6.225 19 C -0.417 4.417 20 H 0.101 0.899 21 C -0.021 4.021 22 N -0.919 5.919 23 Si 1.019 2.981 24 H -0.267 1.267 25 H -0.268 1.268 26 H -0.249 1.249 27 C -0.262 4.262 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.422 0.578 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 -22.063 -10.146 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.305 3.695 3 O -0.482 6.482 4 N -0.340 5.340 5 C -0.026 4.026 6 C -0.167 4.167 7 C -0.151 4.151 8 C 0.007 3.993 9 H 0.122 0.878 10 C 0.291 3.709 11 O -0.423 6.423 12 N -0.308 5.308 13 C 0.090 3.910 14 C -0.220 4.220 15 C -0.072 4.072 16 C -0.233 4.233 17 C 0.083 3.917 18 O -0.131 6.131 19 C -0.493 4.493 20 H 0.118 0.882 21 C -0.219 4.219 22 N -0.557 5.557 23 Si 0.838 3.162 24 H -0.192 1.192 25 H -0.193 1.193 26 H -0.172 1.172 27 C -0.284 4.284 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.260 0.740 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.139 0.861 41 H 0.083 0.917 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.987 -21.002 -9.337 29.812 hybrid contribution 1.066 0.903 -0.545 1.499 sum -17.921 -20.099 -9.881 28.684 Atomic orbital electron populations 1.21881 0.87365 1.06557 1.05770 1.21505 0.92397 0.81596 0.73993 1.90754 1.72174 1.33187 1.52104 1.48569 1.05000 1.07681 1.72714 1.22768 0.97534 0.78900 1.03396 1.22855 0.92607 1.00816 1.00378 1.22756 0.99752 0.87263 1.05359 1.21735 0.83363 0.99910 0.94303 0.87760 1.21786 0.80985 0.77785 0.90307 1.90645 1.59994 1.53358 1.38265 1.43445 1.10249 1.55480 1.21662 1.17507 0.93664 0.92041 0.87761 1.20950 1.04556 1.05673 0.90844 1.20953 0.93400 0.93245 0.99586 1.20494 1.03374 1.05040 0.94406 1.19587 0.88971 0.88646 0.94461 1.83968 1.45717 1.50367 1.33093 1.21813 1.14731 1.28629 0.84088 0.88189 1.26614 0.95704 0.94888 1.04681 1.70190 1.24151 1.27151 1.34194 0.84588 0.77569 0.79810 0.74245 1.19169 1.19298 1.17244 1.20858 1.05121 1.02902 0.99524 0.88115 0.88919 0.86380 0.88816 0.87453 0.92235 0.85593 0.85534 0.89563 0.74045 0.84962 0.82730 0.86081 0.91734 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.67 71.24 0.69 -1.61 16 2 C 0.51 13.47 7.30 87.66 0.64 14.11 16 3 O -0.60 -23.65 16.72 -3.02 -0.05 -23.70 16 4 N -0.61 -11.99 2.79 -792.18 -2.21 -14.20 16 5 C 0.09 0.80 6.27 86.86 0.54 1.34 16 6 C -0.13 -0.99 7.09 31.99 0.23 -0.77 16 7 C -0.11 -1.14 6.48 31.79 0.21 -0.93 16 8 C 0.12 2.35 3.30 44.60 0.15 2.49 16 9 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 10 C 0.50 15.67 6.03 87.66 0.53 16.20 16 11 O -0.55 -21.27 13.41 -3.05 -0.04 -21.31 16 12 N -0.66 -21.06 5.33 -303.56 -1.62 -22.68 16 13 C 0.18 7.54 6.29 38.14 0.24 7.78 16 14 C -0.20 -7.95 8.69 22.43 0.19 -7.76 16 15 C -0.05 -2.08 10.03 22.23 0.22 -1.86 16 16 C -0.21 -9.84 9.99 22.41 0.22 -9.62 16 17 C 0.13 7.13 6.65 22.56 0.15 7.28 16 18 O -0.23 -14.00 9.76 -22.71 -0.22 -14.23 16 19 C -0.42 -24.84 9.49 67.92 0.64 -24.20 16 20 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 21 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 22 N -0.92 -57.27 13.67 21.61 0.30 -56.98 16 23 Si 1.02 43.37 29.55 68.60 2.03 45.40 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 27 C -0.26 -12.37 9.08 22.51 0.20 -12.16 16 28 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.12 0.74 7.18 -2.39 -0.02 0.72 16 31 H 0.09 0.58 7.55 -2.39 -0.02 0.56 16 32 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.96 7.82 -2.39 -0.02 0.94 16 37 H 0.42 10.29 8.82 -92.70 -0.82 9.47 16 38 H 0.13 5.06 6.23 -2.91 -0.02 5.04 16 39 H 0.16 4.75 8.06 -2.91 -0.02 4.72 16 40 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 41 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 42 H 0.13 5.90 5.63 -2.91 -0.02 5.88 16 Total: -1.00 -92.11 354.24 3.75 -88.36 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.25 Total: 29.81 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 5.33 Total: -10.47 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -3.53 Total: -93.86 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -0.31 Total: -59.24 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -92.11 3.75 -88.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.592 kcal (2) G-P(sol) polarization free energy of solvation -92.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds