Wall clock time and date at job start Tue Mar 31 2020 13:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99823 * 2 1 4 4 N 1.34778 * 119.99712 * 179.73532 * 2 1 3 5 5 C 1.47415 * 125.65214 * 0.29047 * 4 2 1 6 6 C 1.54913 * 104.83493 * 204.09931 * 5 4 2 7 7 C 1.55158 * 101.58015 * 322.98771 * 6 5 4 8 8 C 1.47027 * 125.64581 * 179.97438 * 4 2 1 9 9 H 1.09002 * 109.88093 * 59.54915 * 8 4 2 10 10 C 1.50704 * 109.87895 * 298.38812 * 8 4 2 11 11 O 1.21283 * 119.99905 * 341.45643 * 10 8 4 12 12 N 1.34771 * 120.00001 * 161.45417 * 10 8 4 13 13 C 1.39918 * 120.00240 * 174.69302 * 12 10 8 14 14 C 1.38967 * 120.03841 * 326.54786 * 13 12 10 15 15 C 1.38148 * 120.06969 * 179.97438 * 14 13 12 16 16 C 1.38173 * 120.14092 * 359.95794 * 15 14 13 17 17 C 1.38907 * 120.07129 * 359.97438 * 16 15 14 18 18 O 1.35745 * 120.03417 * 180.02562 * 17 16 15 19 19 C 1.34831 * 117.00136 * 185.83410 * 18 17 16 20 20 H 1.08002 * 119.99745 * 5.39597 * 19 18 17 21 21 C 1.38647 * 120.00446 * 185.39866 * 19 18 17 22 22 N 1.31561 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00164 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47395 * 59.99898 * 23 21 19 25 25 H 1.48508 * 109.46840 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47067 * 299.99594 * 23 21 19 27 27 C 1.38720 * 120.03792 * 146.27246 * 13 12 10 28 28 H 1.08991 * 109.47332 * 89.99487 * 1 2 3 29 29 H 1.09005 * 109.46799 * 209.99785 * 1 2 3 30 30 H 1.08998 * 109.46662 * 329.99189 * 1 2 3 31 31 H 1.09000 * 110.36770 * 322.93704 * 5 4 2 32 32 H 1.09003 * 110.36746 * 85.25508 * 5 4 2 33 33 H 1.09001 * 111.00793 * 81.06333 * 6 5 4 34 34 H 1.09001 * 111.00322 * 204.91941 * 6 5 4 35 35 H 1.08996 * 110.72170 * 153.86301 * 7 6 5 36 36 H 1.08997 * 110.72152 * 276.96530 * 7 6 5 37 37 H 0.97003 * 120.00224 * 354.69471 * 12 10 8 38 38 H 1.08005 * 119.95831 * 359.97384 * 14 13 12 39 39 H 1.08006 * 119.93286 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.96517 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99881 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.06587 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0054 5 6 1.5731 -2.5102 0.0055 6 6 2.6522 -3.4339 0.6236 7 6 3.9548 -2.8232 0.0426 8 6 3.6440 -1.3119 0.0055 9 1 4.0644 -0.8272 0.8867 10 6 4.2198 -0.6979 -1.2445 11 8 3.5063 -0.4931 -2.2036 12 7 5.5275 -0.3763 -1.2965 13 6 6.0864 0.0898 -2.4916 14 6 5.6172 -0.3847 -3.7106 15 6 6.1682 0.0754 -4.8909 16 6 7.1863 1.0092 -4.8637 17 6 7.6588 1.4886 -3.6485 18 8 8.6587 2.4063 -3.6227 19 6 9.1527 2.7394 -2.4132 20 1 8.8139 2.2190 -1.5295 21 6 10.0954 3.7501 -2.3037 22 7 10.5084 4.3837 -3.3802 23 14 10.7803 4.2111 -0.6281 24 1 11.4486 3.0303 -0.0244 25 1 11.7653 5.3119 -0.7817 26 1 9.6721 4.6574 0.2539 27 6 7.1055 1.0305 -2.4611 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3632 0.8899 0.5140 31 1 0.6711 -2.5184 0.6174 32 1 1.3441 -2.8231 -1.0132 33 1 2.6430 -3.3718 1.7118 34 1 2.5217 -4.4639 0.2916 35 1 4.8023 -3.0291 0.6964 36 1 4.1436 -3.2017 -0.9619 37 1 6.0815 -0.4680 -0.5055 38 1 4.8210 -1.1141 -3.7350 39 1 5.8021 -0.2952 -5.8370 40 1 7.6147 1.3673 -5.7881 41 1 11.1683 5.0906 -3.3037 42 1 7.4691 1.4038 -1.5152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049294073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:29 Heat of formation + Delta-G solvation = -59.602533 kcal Electronic energy + Delta-G solvation = -26409.989093 eV Core-core repulsion = 22549.225808 eV Total energy + Delta-G solvation = -3860.763285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.93745 -39.49927 -38.46414 -37.41403 -36.26250 -34.21018 -32.36650 -32.19179 -30.63132 -29.49785 -28.94534 -28.19522 -25.30973 -24.38376 -22.53017 -21.82706 -21.63329 -20.34405 -19.32603 -18.03731 -17.72453 -17.40953 -17.09273 -16.09167 -15.52196 -15.23926 -15.14736 -14.93166 -14.60302 -14.19799 -14.07393 -13.76022 -13.65900 -13.46382 -13.30876 -12.97812 -12.89182 -12.63503 -12.36156 -12.30349 -12.04531 -11.69522 -11.65083 -11.47937 -11.35668 -11.08648 -10.90902 -10.78238 -10.44698 -10.00981 -9.91347 -9.62428 -9.43606 -8.84566 -8.77095 -7.69168 -7.12612 -6.41851 -4.01534 1.99606 2.39097 2.42104 2.65802 2.91244 3.14173 3.16636 3.18467 3.34778 3.98904 4.01759 4.10615 4.43326 4.58630 4.62085 4.71959 4.79807 4.93997 5.01695 5.12658 5.14542 5.21769 5.31026 5.31823 5.40202 5.43186 5.57990 5.69044 5.73929 5.92114 6.01696 6.10504 6.28431 6.31136 6.65756 6.99566 7.02284 7.14948 7.25888 7.33105 7.45251 7.72019 7.84397 8.02118 8.03215 8.34624 9.03451 9.73848 10.76223 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.003188 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.474090 B = 8781.032575 C = 9357.061733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.529 3.471 3 O -0.531 6.531 4 N -0.604 5.604 5 C 0.099 3.901 6 C -0.130 4.130 7 C -0.121 4.121 8 C 0.119 3.881 9 H 0.098 0.902 10 C 0.508 3.492 11 O -0.507 6.507 12 N -0.667 5.667 13 C 0.183 3.817 14 C -0.206 4.206 15 C -0.063 4.063 16 C -0.201 4.201 17 C 0.169 3.831 18 O -0.176 6.176 19 C -0.392 4.392 20 H 0.089 0.911 21 C 0.040 3.960 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.255 4.255 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.405 0.595 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.270 0.730 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.615 -17.792 10.434 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.319 3.681 3 O -0.406 6.406 4 N -0.340 5.340 5 C -0.023 4.023 6 C -0.168 4.168 7 C -0.159 4.159 8 C 0.011 3.989 9 H 0.116 0.884 10 C 0.293 3.707 11 O -0.381 6.381 12 N -0.311 5.311 13 C 0.090 3.910 14 C -0.227 4.227 15 C -0.082 4.082 16 C -0.221 4.221 17 C 0.115 3.885 18 O -0.079 6.079 19 C -0.469 4.469 20 H 0.107 0.893 21 C -0.164 4.164 22 N -0.498 5.498 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.276 4.276 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.240 0.760 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.628 -16.679 9.538 25.409 hybrid contribution 0.605 0.272 1.273 1.436 sum -16.023 -16.406 10.811 25.353 Atomic orbital electron populations 1.21873 0.91075 1.04595 1.04977 1.20523 0.90425 0.81923 0.75255 1.90789 1.70514 1.30535 1.48802 1.48299 1.04957 1.06400 1.74341 1.22401 0.96872 0.81569 1.01492 1.22792 0.93620 0.99331 1.01086 1.22624 0.99136 0.90851 1.03335 1.21478 0.82999 0.97659 0.96741 0.88395 1.20778 0.81796 0.78294 0.89821 1.90703 1.58663 1.51323 1.37384 1.43437 1.09835 1.65030 1.12844 1.17402 0.94309 0.94330 0.84934 1.20481 1.04978 1.06297 0.90920 1.20510 0.94877 0.95832 0.97000 1.20237 1.02341 1.03419 0.96087 1.19076 0.87737 0.89156 0.92580 1.84016 1.42124 1.49615 1.32159 1.21227 1.22646 1.19325 0.83657 0.89324 1.25271 0.96571 0.95278 0.99324 1.70031 1.29294 1.22241 1.28211 0.85805 0.78852 0.78574 0.80335 1.19525 1.20252 1.19525 1.20826 1.03907 1.03448 0.99466 0.88621 0.90259 0.88850 0.89941 0.90836 0.90051 0.89173 0.88754 0.89738 0.75973 0.86595 0.86675 0.86382 0.91981 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.91 36.01 0.36 -1.03 16 2 C 0.53 7.14 7.35 -10.98 -0.08 7.06 16 3 O -0.53 -10.06 16.92 5.55 0.09 -9.97 16 4 N -0.60 -6.69 2.75 -164.31 -0.45 -7.14 16 5 C 0.10 0.64 6.67 -2.53 -0.02 0.63 16 6 C -0.13 -0.62 7.09 -24.58 -0.17 -0.79 16 7 C -0.12 -0.85 6.47 -24.89 -0.16 -1.01 16 8 C 0.12 1.34 3.26 -68.09 -0.22 1.12 16 9 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 10 C 0.51 8.17 6.02 -10.99 -0.07 8.10 16 11 O -0.51 -10.11 13.83 5.55 0.08 -10.03 16 12 N -0.67 -10.83 5.34 -9.88 -0.05 -10.88 16 13 C 0.18 3.72 6.27 -83.72 -0.53 3.19 16 14 C -0.21 -4.14 8.65 -39.34 -0.34 -4.48 16 15 C -0.06 -1.25 10.03 -39.64 -0.40 -1.65 16 16 C -0.20 -4.49 9.99 -39.36 -0.39 -4.88 16 17 C 0.17 4.25 6.64 -39.13 -0.26 3.99 16 18 O -0.18 -5.14 9.76 0.06 0.00 -5.14 16 19 C -0.39 -11.16 9.44 30.88 0.29 -10.87 16 20 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -25.72 13.67 55.48 0.76 -24.97 16 23 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 27 C -0.25 -5.81 9.04 -39.20 -0.35 -6.17 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.40 6.51 -51.93 -0.34 0.06 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.33 6.74 -51.93 -0.35 -0.02 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.68 7.84 -51.93 -0.41 0.27 16 37 H 0.41 5.18 8.82 -40.82 -0.36 4.82 16 38 H 0.12 2.25 6.42 -52.48 -0.34 1.92 16 39 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 40 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.13 2.90 5.72 -52.49 -0.30 2.60 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -38.70 354.25 -7.01 -45.71 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.31 Total: 7.06 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.44 Total: -5.77 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.25 Total: -42.99 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.17 Total: -25.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.70 -7.01 -45.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.897 kcal (2) G-P(sol) polarization free energy of solvation -38.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds