Wall clock time and date at job start Tue Mar 31 2020 13:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99823 * 2 1 4 4 N 1.34778 * 119.99712 * 179.73532 * 2 1 3 5 5 C 1.47415 * 125.65214 * 0.29047 * 4 2 1 6 6 C 1.54913 * 104.83493 * 204.09931 * 5 4 2 7 7 C 1.55158 * 101.58015 * 322.98771 * 6 5 4 8 8 C 1.47027 * 125.64581 * 179.97438 * 4 2 1 9 9 H 1.09002 * 109.88093 * 59.54915 * 8 4 2 10 10 C 1.50704 * 109.87895 * 298.38812 * 8 4 2 11 11 O 1.21283 * 119.99905 * 341.45643 * 10 8 4 12 12 N 1.34771 * 120.00001 * 161.45417 * 10 8 4 13 13 C 1.39918 * 120.00240 * 174.69302 * 12 10 8 14 14 C 1.38967 * 120.03841 * 326.54786 * 13 12 10 15 15 C 1.38148 * 120.06969 * 179.97438 * 14 13 12 16 16 C 1.38173 * 120.14092 * 359.95794 * 15 14 13 17 17 C 1.38907 * 120.07129 * 359.97438 * 16 15 14 18 18 O 1.35745 * 120.03417 * 180.02562 * 17 16 15 19 19 C 1.34831 * 117.00136 * 185.83410 * 18 17 16 20 20 H 1.08002 * 119.99745 * 5.39597 * 19 18 17 21 21 C 1.38647 * 120.00446 * 185.39866 * 19 18 17 22 22 N 1.31561 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00164 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47395 * 59.99898 * 23 21 19 25 25 H 1.48508 * 109.46840 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47067 * 299.99594 * 23 21 19 27 27 C 1.38720 * 120.03792 * 146.27246 * 13 12 10 28 28 H 1.08991 * 109.47332 * 89.99487 * 1 2 3 29 29 H 1.09005 * 109.46799 * 209.99785 * 1 2 3 30 30 H 1.08998 * 109.46662 * 329.99189 * 1 2 3 31 31 H 1.09000 * 110.36770 * 322.93704 * 5 4 2 32 32 H 1.09003 * 110.36746 * 85.25508 * 5 4 2 33 33 H 1.09001 * 111.00793 * 81.06333 * 6 5 4 34 34 H 1.09001 * 111.00322 * 204.91941 * 6 5 4 35 35 H 1.08996 * 110.72170 * 153.86301 * 7 6 5 36 36 H 1.08997 * 110.72152 * 276.96530 * 7 6 5 37 37 H 0.97003 * 120.00224 * 354.69471 * 12 10 8 38 38 H 1.08005 * 119.95831 * 359.97384 * 14 13 12 39 39 H 1.08006 * 119.93286 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.96517 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99881 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.06587 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0054 5 6 1.5731 -2.5102 0.0055 6 6 2.6522 -3.4339 0.6236 7 6 3.9548 -2.8232 0.0426 8 6 3.6440 -1.3119 0.0055 9 1 4.0644 -0.8272 0.8867 10 6 4.2198 -0.6979 -1.2445 11 8 3.5063 -0.4931 -2.2036 12 7 5.5275 -0.3763 -1.2965 13 6 6.0864 0.0898 -2.4916 14 6 5.6172 -0.3847 -3.7106 15 6 6.1682 0.0754 -4.8909 16 6 7.1863 1.0092 -4.8637 17 6 7.6588 1.4886 -3.6485 18 8 8.6587 2.4063 -3.6227 19 6 9.1527 2.7394 -2.4132 20 1 8.8139 2.2190 -1.5295 21 6 10.0954 3.7501 -2.3037 22 7 10.5084 4.3837 -3.3802 23 14 10.7803 4.2111 -0.6281 24 1 11.4486 3.0303 -0.0244 25 1 11.7653 5.3119 -0.7817 26 1 9.6721 4.6574 0.2539 27 6 7.1055 1.0305 -2.4611 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3632 0.8899 0.5140 31 1 0.6711 -2.5184 0.6174 32 1 1.3441 -2.8231 -1.0132 33 1 2.6430 -3.3718 1.7118 34 1 2.5217 -4.4639 0.2916 35 1 4.8023 -3.0291 0.6964 36 1 4.1436 -3.2017 -0.9619 37 1 6.0815 -0.4680 -0.5055 38 1 4.8210 -1.1141 -3.7350 39 1 5.8021 -0.2952 -5.8370 40 1 7.6147 1.3673 -5.7881 41 1 11.1683 5.0906 -3.3037 42 1 7.4691 1.4038 -1.5152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049294073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:24 Heat of formation + Delta-G solvation = -88.074927 kcal Electronic energy + Delta-G solvation = -26411.223749 eV Core-core repulsion = 22549.225808 eV Total energy + Delta-G solvation = -3861.997941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -42.05792 -40.94843 -40.03131 -38.49508 -37.86448 -35.73534 -34.27393 -33.16632 -31.58356 -30.88046 -30.27968 -29.40056 -27.34565 -25.29014 -23.73162 -23.55925 -22.43724 -21.68979 -20.47150 -19.78750 -19.24155 -18.60625 -18.17739 -17.25025 -16.93119 -16.80089 -16.50957 -16.24782 -15.91790 -15.69579 -15.57224 -15.41308 -14.83955 -14.62164 -14.43068 -14.14150 -13.96830 -13.61913 -13.52277 -13.32270 -13.28151 -13.09779 -12.82829 -12.74322 -12.62983 -12.51010 -12.16647 -12.08051 -11.80128 -11.50958 -11.34449 -11.05234 -10.97155 -10.75713 -9.79750 -9.41369 -8.93090 -8.49409 -6.18637 0.33950 0.64121 1.33040 1.35411 1.44291 1.49846 1.58297 1.85413 2.14976 2.17593 2.79569 3.12459 3.36171 3.44112 3.45085 3.70314 3.84007 4.03059 4.07512 4.16212 4.26823 4.39275 4.41330 4.51438 4.55514 4.57589 4.68023 4.72762 4.81031 4.88553 4.96516 4.97689 5.06844 5.08879 5.19763 5.31296 5.33956 5.42638 5.60362 5.62063 5.98082 6.11212 6.33836 6.45379 6.94440 7.01402 7.10270 7.73049 8.73453 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.003188 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.474090 B = 8781.032575 C = 9357.061733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.513 3.487 3 O -0.602 6.602 4 N -0.604 5.604 5 C 0.089 3.911 6 C -0.117 4.117 7 C -0.116 4.116 8 C 0.116 3.884 9 H 0.105 0.895 10 C 0.504 3.496 11 O -0.550 6.550 12 N -0.661 5.661 13 C 0.187 3.813 14 C -0.199 4.199 15 C -0.051 4.051 16 C -0.214 4.214 17 C 0.135 3.865 18 O -0.225 6.225 19 C -0.417 4.417 20 H 0.101 0.899 21 C -0.021 4.021 22 N -0.919 5.919 23 Si 1.018 2.982 24 H -0.252 1.252 25 H -0.270 1.270 26 H -0.261 1.261 27 C -0.263 4.263 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.422 0.578 38 H 0.129 0.871 39 H 0.156 0.844 40 H 0.122 0.878 41 H 0.274 0.726 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.638 -21.021 12.791 30.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.305 3.695 3 O -0.483 6.483 4 N -0.338 5.338 5 C -0.032 4.032 6 C -0.155 4.155 7 C -0.154 4.154 8 C 0.008 3.992 9 H 0.123 0.877 10 C 0.291 3.709 11 O -0.426 6.426 12 N -0.307 5.307 13 C 0.092 3.908 14 C -0.220 4.220 15 C -0.069 4.069 16 C -0.234 4.234 17 C 0.084 3.916 18 O -0.131 6.131 19 C -0.493 4.493 20 H 0.118 0.882 21 C -0.219 4.219 22 N -0.557 5.557 23 Si 0.837 3.163 24 H -0.176 1.176 25 H -0.195 1.195 26 H -0.186 1.186 27 C -0.285 4.285 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.259 0.741 38 H 0.147 0.853 39 H 0.174 0.826 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.697 -20.019 11.924 29.876 hybrid contribution 1.003 1.058 0.450 1.525 sum -17.695 -18.962 12.374 28.736 Atomic orbital electron populations 1.21901 0.87347 1.06627 1.05774 1.21507 0.92422 0.81571 0.73982 1.90747 1.72187 1.33125 1.52242 1.48553 1.05080 1.07659 1.72530 1.22778 0.98619 0.79341 1.02417 1.22842 0.90912 0.99848 1.01882 1.22715 1.01569 0.87356 1.03758 1.21714 0.83359 1.00247 0.93880 0.87679 1.21803 0.80996 0.77054 0.91011 1.90668 1.59470 1.53033 1.39412 1.43486 1.10517 1.64472 1.12227 1.17504 0.93242 0.93203 0.86856 1.20807 1.04471 1.05750 0.90968 1.20932 0.93130 0.94083 0.98784 1.20491 1.03241 1.04204 0.95443 1.19606 0.88079 0.89394 0.94531 1.83979 1.44376 1.51837 1.32882 1.21768 1.23355 1.20073 0.84084 0.88183 1.26608 0.96522 0.94728 1.04025 1.70179 1.30810 1.23552 1.31122 0.84661 0.78255 0.78835 0.74543 1.17584 1.19484 1.18594 1.20855 1.04766 1.04217 0.98656 0.88201 0.86291 0.88823 0.86759 0.91032 0.88373 0.86706 0.86233 0.90683 0.74056 0.85286 0.82610 0.86023 0.91723 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.91 71.24 0.71 -1.59 16 2 C 0.51 13.41 7.35 87.66 0.64 14.05 16 3 O -0.60 -23.39 16.92 -3.04 -0.05 -23.44 16 4 N -0.60 -12.09 2.75 -792.14 -2.18 -14.27 16 5 C 0.09 0.80 6.67 86.86 0.58 1.38 16 6 C -0.12 -0.54 7.09 31.99 0.23 -0.32 16 7 C -0.12 -1.22 6.47 31.79 0.21 -1.01 16 8 C 0.12 2.38 3.26 44.60 0.15 2.53 16 9 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 10 C 0.50 15.77 6.02 87.66 0.53 16.30 16 11 O -0.55 -21.68 13.83 -3.04 -0.04 -21.72 16 12 N -0.66 -21.05 5.34 -303.56 -1.62 -22.67 16 13 C 0.19 7.54 6.27 38.14 0.24 7.78 16 14 C -0.20 -7.79 8.65 22.42 0.19 -7.60 16 15 C -0.05 -1.95 10.03 22.23 0.22 -1.72 16 16 C -0.21 -9.75 9.99 22.41 0.22 -9.53 16 17 C 0.14 7.11 6.64 22.56 0.15 7.26 16 18 O -0.22 -13.91 9.76 -22.70 -0.22 -14.13 16 19 C -0.42 -24.81 9.44 67.92 0.64 -24.17 16 20 H 0.10 5.45 5.30 -2.91 -0.02 5.43 16 21 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 22 N -0.92 -57.34 13.67 21.61 0.30 -57.04 16 23 Si 1.02 43.46 29.55 68.60 2.03 45.49 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 27 C -0.26 -12.35 9.04 22.51 0.20 -12.15 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.12 0.71 6.51 -2.38 -0.02 0.70 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 0.32 6.74 -2.39 -0.02 0.31 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.97 7.84 -2.39 -0.02 0.95 16 37 H 0.42 10.40 8.82 -92.71 -0.82 9.59 16 38 H 0.13 4.78 6.42 -2.91 -0.02 4.76 16 39 H 0.16 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.12 5.34 8.06 -2.91 -0.02 5.31 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.13 5.86 5.72 -2.91 -0.02 5.84 16 Total: -1.00 -91.94 354.25 3.83 -88.11 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.25 Total: 29.22 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 5.38 Total: -9.54 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -3.51 Total: -93.97 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: -0.31 Total: -59.30 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -91.94 3.83 -88.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.030 kcal (2) G-P(sol) polarization free energy of solvation -91.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds