Wall clock time and date at job start Tue Mar 31 2020 13:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47346 * 2 1 4 4 C 1.46772 * 124.34556 * 90.00068 * 3 2 1 5 5 C 1.54487 * 105.47107 * 162.96308 * 4 3 2 6 6 H 1.09000 * 110.96543 * 267.26029 * 5 4 3 7 7 C 1.50694 * 110.96639 * 143.53392 * 5 4 3 8 8 O 1.21286 * 120.00587 * 3.08998 * 7 5 4 9 9 N 1.34775 * 119.99807 * 183.08658 * 7 5 4 10 10 C 1.39923 * 120.00008 * 175.27528 * 9 7 5 11 11 C 1.38961 * 120.03743 * 35.76968 * 10 9 7 12 12 C 1.38158 * 120.06929 * 179.97438 * 11 10 9 13 13 C 1.38166 * 120.13759 * 359.97438 * 12 11 10 14 14 C 1.38914 * 120.07170 * 0.27880 * 13 12 11 15 15 O 1.35753 * 120.03366 * 179.69809 * 14 13 12 16 16 C 1.34825 * 117.00181 * 185.85447 * 15 14 13 17 17 H 1.08008 * 119.99732 * 5.25025 * 16 15 14 18 18 C 1.38644 * 120.00284 * 185.25908 * 16 15 14 19 19 N 1.31562 * 120.00207 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00082 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46781 * 90.00373 * 20 18 16 22 22 H 1.48497 * 109.47199 * 210.00333 * 20 18 16 23 23 H 1.48494 * 109.47054 * 330.00904 * 20 18 16 24 24 C 1.38717 * 120.03549 * 215.74715 * 10 9 7 25 25 C 1.54629 * 101.79651 * 25.39481 * 5 4 3 26 26 C 1.34418 * 124.35428 * 269.97792 * 3 2 1 27 27 O 1.21280 * 124.93767 * 0.43367 * 26 3 2 28 28 H 1.08994 * 109.46875 * 299.99980 * 1 2 3 29 29 H 1.09001 * 109.47046 * 59.99729 * 1 2 3 30 30 H 1.08995 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47129 * 239.99924 * 2 1 3 32 32 H 1.09001 * 109.47046 * 120.00271 * 2 1 3 33 33 H 1.08993 * 110.24462 * 43.96276 * 4 3 2 34 34 H 1.09001 * 110.24647 * 281.96284 * 4 3 2 35 35 H 0.96999 * 120.00248 * 355.28315 * 9 7 5 36 36 H 1.07998 * 119.96414 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.93143 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.96488 * 180.02562 * 13 12 11 39 39 H 0.97005 * 119.99997 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.06957 * 0.02562 * 24 10 9 41 41 H 1.09007 * 110.48396 * 93.90127 * 25 5 4 42 42 H 1.09003 * 110.48497 * 216.53889 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1618 1.2118 5 6 3.1751 3.3437 0.7489 6 1 4.2337 3.1027 0.8458 7 6 2.8383 4.5985 1.5125 8 8 2.0114 4.5655 2.3991 9 7 3.4561 5.7576 1.2101 10 6 3.0739 6.9418 1.8500 11 6 2.6867 6.9177 3.1843 12 6 2.3096 8.0866 3.8169 13 6 2.3167 9.2829 3.1256 14 6 2.6977 9.3128 1.7901 15 8 2.6985 10.4876 1.1099 16 6 2.9607 10.4298 -0.2113 17 1 3.0740 9.4723 -0.6980 18 6 3.0853 11.5995 -0.9452 19 7 3.3417 11.5431 -2.2344 20 14 2.8890 13.2556 -0.1036 21 1 4.2102 13.7190 0.3913 22 1 2.3497 14.2427 -1.0731 23 1 1.9513 13.1216 1.0399 24 6 3.0814 8.1411 1.1531 25 6 2.7714 3.4754 -0.7379 26 6 2.2717 2.0962 -1.1097 27 8 2.1221 1.6942 -2.2441 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.8321 1.5528 1.9385 34 1 1.3639 2.5310 1.6429 35 1 4.1657 5.7709 0.5489 36 1 2.6805 5.9842 3.7274 37 1 2.0095 8.0654 4.8541 38 1 2.0218 10.1951 3.6230 39 1 3.4292 12.3615 -2.7478 40 1 3.3819 8.1625 0.1160 41 1 1.9770 4.2128 -0.8536 42 1 3.6353 3.7455 -1.3453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049297911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:10 Heat of formation + Delta-G solvation = -63.212496 kcal Electronic energy + Delta-G solvation = -25885.213965 eV Core-core repulsion = 22024.294140 eV Total energy + Delta-G solvation = -3860.919825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18825 -39.94979 -38.84119 -36.89315 -36.35934 -34.53652 -34.11619 -32.39919 -30.37076 -29.43375 -28.72739 -27.97804 -25.32023 -24.54801 -23.27149 -21.85058 -21.68013 -20.04644 -19.63499 -18.26457 -17.86464 -17.46918 -16.99839 -16.19716 -15.78633 -15.56603 -15.36432 -15.01307 -14.62880 -14.24188 -14.00491 -13.90936 -13.87257 -13.73918 -13.68039 -13.25356 -13.12909 -12.57938 -12.35315 -12.30015 -12.21846 -11.96596 -11.75539 -11.65238 -11.40044 -11.31250 -10.98628 -10.81699 -10.33828 -10.18579 -9.98391 -9.64979 -9.54439 -9.03430 -8.89793 -7.90941 -7.38344 -6.46715 -4.14295 1.76969 2.19962 2.32240 2.55812 2.60146 3.06264 3.19738 3.23081 3.37738 3.88676 4.01573 4.19797 4.36792 4.47962 4.52781 4.69764 4.81408 4.83243 4.85797 5.03458 5.03790 5.13685 5.25730 5.36058 5.41347 5.54417 5.56041 5.58053 5.84945 5.86583 5.89986 6.07416 6.11928 6.22183 6.40973 6.77986 6.79203 6.82206 7.10942 7.13760 7.45373 7.57988 7.71012 7.88911 7.96391 8.09427 8.88542 9.50055 10.60805 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.002860 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.677481 B = 9788.069051 C =10951.455258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.621 5.621 4 C 0.118 3.882 5 C -0.123 4.123 6 H 0.121 0.879 7 C 0.524 3.476 8 O -0.515 6.515 9 N -0.663 5.663 10 C 0.174 3.826 11 C -0.197 4.197 12 C -0.066 4.066 13 C -0.198 4.198 14 C 0.172 3.828 15 O -0.215 6.215 16 C -0.391 4.391 17 H 0.105 0.895 18 C 0.064 3.936 19 N -0.879 5.879 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.241 4.241 25 C -0.148 4.148 26 C 0.522 3.478 27 O -0.528 6.528 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.410 0.590 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.280 0.720 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 -19.259 7.765 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.356 5.356 4 C -0.005 4.005 5 C -0.145 4.145 6 H 0.139 0.861 7 C 0.310 3.690 8 O -0.390 6.390 9 N -0.307 5.307 10 C 0.081 3.919 11 C -0.218 4.218 12 C -0.085 4.085 13 C -0.217 4.217 14 C 0.120 3.880 15 O -0.120 6.120 16 C -0.466 4.466 17 H 0.122 0.878 18 C -0.139 4.139 19 N -0.516 5.516 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.263 4.263 25 C -0.188 4.188 26 C 0.309 3.691 27 O -0.404 6.404 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.245 0.755 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.155 0.845 41 H 0.131 0.869 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.132 -19.264 7.624 20.718 hybrid contribution 0.379 0.741 -0.257 0.871 sum 0.246 -18.524 7.366 19.936 Atomic orbital electron populations 1.22175 0.95639 1.02396 1.02792 1.21356 0.94575 0.80764 1.03152 1.48369 1.66009 1.13992 1.07181 1.21979 1.00596 0.90998 0.86919 1.22233 1.02899 0.93930 0.95433 0.86113 1.20092 0.81036 0.84190 0.83660 1.90727 1.32807 1.85037 1.30449 1.43398 1.38155 1.06453 1.42703 1.17418 0.98892 0.84286 0.91313 1.20721 1.09115 0.98765 0.93170 1.20558 0.97848 0.91429 0.98693 1.20280 1.09987 0.98577 0.92902 1.18814 0.92773 0.85470 0.90982 1.83614 1.78736 1.26564 1.23039 1.20714 1.50095 0.96660 0.79149 0.87779 1.24463 0.95464 0.99103 0.94900 1.69645 1.46168 1.29921 1.05895 0.86182 0.79434 0.81639 0.79679 1.19879 1.20765 1.18281 1.20957 1.12215 0.91490 1.01619 1.22407 1.04774 0.96927 0.94697 1.20750 0.76779 0.87143 0.84421 1.90741 1.53643 1.75016 1.21038 0.92159 0.92148 0.91363 0.89940 0.90209 0.89593 0.88894 0.75453 0.85692 0.86408 0.86358 0.90999 0.84544 0.86901 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.12 0.93 6.65 -4.04 -0.03 0.91 16 3 N -0.62 -5.78 2.93 -172.38 -0.51 -6.29 16 4 C 0.12 0.96 6.69 -3.11 -0.02 0.94 16 5 C -0.12 -1.01 3.54 -90.14 -0.32 -1.33 16 6 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 7 C 0.52 6.32 6.90 -10.99 -0.08 6.24 16 8 O -0.52 -7.86 13.00 5.55 0.07 -7.79 16 9 N -0.66 -8.58 5.32 -9.88 -0.05 -8.64 16 10 C 0.17 2.99 6.28 -83.72 -0.53 2.47 16 11 C -0.20 -3.38 8.69 -39.34 -0.34 -3.72 16 12 C -0.07 -1.12 10.03 -39.64 -0.40 -1.52 16 13 C -0.20 -3.80 9.99 -39.36 -0.39 -4.19 16 14 C 0.17 3.82 6.64 -39.13 -0.26 3.56 16 15 O -0.21 -5.47 8.58 0.05 0.00 -5.47 16 16 C -0.39 -10.63 9.90 30.88 0.31 -10.32 16 17 H 0.10 2.87 5.53 -52.48 -0.29 2.58 16 18 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 19 N -0.88 -24.77 13.96 55.48 0.77 -23.99 16 20 Si 0.91 21.18 28.62 -169.99 -4.86 16.32 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.24 -4.87 9.05 -39.21 -0.35 -5.23 16 25 C -0.15 -1.38 6.40 -26.71 -0.17 -1.55 16 26 C 0.52 6.10 8.02 -10.83 -0.09 6.02 16 27 O -0.53 -8.22 17.59 5.56 0.10 -8.13 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.91 7.01 -51.93 -0.36 0.55 16 35 H 0.41 4.14 8.82 -40.82 -0.36 3.77 16 36 H 0.13 2.06 6.27 -52.49 -0.33 1.73 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 39 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.14 2.84 5.72 -52.49 -0.30 2.54 16 41 H 0.11 1.18 7.89 -51.93 -0.41 0.77 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -33.24 356.45 -6.90 -40.13 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.40 Total: 5.46 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.38 Total: -6.97 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.22 Total: -38.92 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.17 Total: -21.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.86 Total: 16.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.24 -6.90 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049297911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.082 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds