Wall clock time and date at job start Tue Mar 31 2020 13:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47346 * 2 1 4 4 C 1.46772 * 124.34556 * 90.00068 * 3 2 1 5 5 C 1.54487 * 105.47107 * 162.96308 * 4 3 2 6 6 H 1.09000 * 110.96543 * 267.26029 * 5 4 3 7 7 C 1.50694 * 110.96639 * 143.53392 * 5 4 3 8 8 O 1.21286 * 120.00587 * 3.08998 * 7 5 4 9 9 N 1.34775 * 119.99807 * 183.08658 * 7 5 4 10 10 C 1.39923 * 120.00008 * 175.27528 * 9 7 5 11 11 C 1.38961 * 120.03743 * 35.76968 * 10 9 7 12 12 C 1.38158 * 120.06929 * 179.97438 * 11 10 9 13 13 C 1.38166 * 120.13759 * 359.97438 * 12 11 10 14 14 C 1.38914 * 120.07170 * 0.27880 * 13 12 11 15 15 O 1.35753 * 120.03366 * 179.69809 * 14 13 12 16 16 C 1.34825 * 117.00181 * 185.85447 * 15 14 13 17 17 H 1.08008 * 119.99732 * 5.25025 * 16 15 14 18 18 C 1.38644 * 120.00284 * 185.25908 * 16 15 14 19 19 N 1.31562 * 120.00207 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00082 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46781 * 90.00373 * 20 18 16 22 22 H 1.48497 * 109.47199 * 210.00333 * 20 18 16 23 23 H 1.48494 * 109.47054 * 330.00904 * 20 18 16 24 24 C 1.38717 * 120.03549 * 215.74715 * 10 9 7 25 25 C 1.54629 * 101.79651 * 25.39481 * 5 4 3 26 26 C 1.34418 * 124.35428 * 269.97792 * 3 2 1 27 27 O 1.21280 * 124.93767 * 0.43367 * 26 3 2 28 28 H 1.08994 * 109.46875 * 299.99980 * 1 2 3 29 29 H 1.09001 * 109.47046 * 59.99729 * 1 2 3 30 30 H 1.08995 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47129 * 239.99924 * 2 1 3 32 32 H 1.09001 * 109.47046 * 120.00271 * 2 1 3 33 33 H 1.08993 * 110.24462 * 43.96276 * 4 3 2 34 34 H 1.09001 * 110.24647 * 281.96284 * 4 3 2 35 35 H 0.96999 * 120.00248 * 355.28315 * 9 7 5 36 36 H 1.07998 * 119.96414 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.93143 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.96488 * 180.02562 * 13 12 11 39 39 H 0.97005 * 119.99997 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.06957 * 0.02562 * 24 10 9 41 41 H 1.09007 * 110.48396 * 93.90127 * 25 5 4 42 42 H 1.09003 * 110.48497 * 216.53889 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1618 1.2118 5 6 3.1751 3.3437 0.7489 6 1 4.2337 3.1027 0.8458 7 6 2.8383 4.5985 1.5125 8 8 2.0114 4.5655 2.3991 9 7 3.4561 5.7576 1.2101 10 6 3.0739 6.9418 1.8500 11 6 2.6867 6.9177 3.1843 12 6 2.3096 8.0866 3.8169 13 6 2.3167 9.2829 3.1256 14 6 2.6977 9.3128 1.7901 15 8 2.6985 10.4876 1.1099 16 6 2.9607 10.4298 -0.2113 17 1 3.0740 9.4723 -0.6980 18 6 3.0853 11.5995 -0.9452 19 7 3.3417 11.5431 -2.2344 20 14 2.8890 13.2556 -0.1036 21 1 4.2102 13.7190 0.3913 22 1 2.3497 14.2427 -1.0731 23 1 1.9513 13.1216 1.0399 24 6 3.0814 8.1411 1.1531 25 6 2.7714 3.4754 -0.7379 26 6 2.2717 2.0962 -1.1097 27 8 2.1221 1.6942 -2.2441 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.8321 1.5528 1.9385 34 1 1.3639 2.5310 1.6429 35 1 4.1657 5.7709 0.5489 36 1 2.6805 5.9842 3.7274 37 1 2.0095 8.0654 4.8541 38 1 2.0218 10.1951 3.6230 39 1 3.4292 12.3615 -2.7478 40 1 3.3819 8.1625 0.1160 41 1 1.9770 4.2128 -0.8536 42 1 3.6353 3.7455 -1.3453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049297911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:09 Heat of formation + Delta-G solvation = -85.459792 kcal Electronic energy + Delta-G solvation = -25886.178680 eV Core-core repulsion = 22024.294140 eV Total energy + Delta-G solvation = -3861.884540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13469 -41.15773 -40.29993 -38.30663 -37.41417 -35.72748 -34.92804 -34.37615 -31.35710 -30.85311 -30.02333 -28.78971 -27.20608 -25.45749 -24.07070 -23.38777 -22.88970 -21.22091 -20.46409 -19.88701 -19.36611 -18.65315 -17.83608 -17.21549 -17.11694 -16.86738 -16.46459 -16.26845 -16.05157 -15.66313 -15.43862 -15.12943 -14.97063 -14.69093 -14.58027 -14.44668 -14.27150 -14.15874 -13.86826 -13.31891 -13.25004 -12.96360 -12.84811 -12.73135 -12.55962 -12.45717 -12.38658 -12.07509 -12.01753 -11.54008 -11.25377 -11.13901 -10.87192 -10.73285 -9.81476 -9.39055 -8.93846 -8.48818 -6.21375 0.37542 0.67159 1.33840 1.36823 1.41066 1.48177 1.53993 1.78370 2.10947 2.29456 2.78310 3.07113 3.09923 3.14808 3.26264 3.64589 3.80517 4.04801 4.10185 4.17021 4.22956 4.34603 4.44268 4.45289 4.51372 4.57245 4.63016 4.70069 4.73268 4.79051 4.89634 4.92007 4.94255 5.23889 5.35688 5.40914 5.48368 5.52512 5.65551 5.77235 5.90482 5.99343 6.22326 6.40997 6.86009 7.01232 7.04669 7.59811 8.62375 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.002860 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.677481 B = 9788.069051 C =10951.455258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.614 5.614 4 C 0.118 3.882 5 C -0.105 4.105 6 H 0.162 0.838 7 C 0.528 3.472 8 O -0.544 6.544 9 N -0.659 5.659 10 C 0.180 3.820 11 C -0.188 4.188 12 C -0.055 4.055 13 C -0.202 4.202 14 C 0.137 3.863 15 O -0.242 6.242 16 C -0.396 4.396 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.262 1.262 24 C -0.253 4.253 25 C -0.145 4.145 26 C 0.513 3.487 27 O -0.576 6.576 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.424 0.576 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.131 0.869 39 H 0.284 0.716 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 -20.940 10.650 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.347 5.347 4 C -0.004 4.004 5 C -0.126 4.126 6 H 0.179 0.821 7 C 0.316 3.684 8 O -0.420 6.420 9 N -0.304 5.304 10 C 0.085 3.915 11 C -0.209 4.209 12 C -0.074 4.074 13 C -0.222 4.222 14 C 0.087 3.913 15 O -0.149 6.149 16 C -0.473 4.473 17 H 0.101 0.899 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.186 1.186 24 C -0.274 4.274 25 C -0.186 4.186 26 C 0.301 3.699 27 O -0.456 6.456 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.262 0.738 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.149 0.851 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.391 -21.001 10.555 23.507 hybrid contribution 0.161 0.943 -0.956 1.353 sum 0.552 -20.058 9.598 22.243 Atomic orbital electron populations 1.22145 0.95776 1.03330 1.01378 1.21574 0.94464 0.80019 1.04380 1.48511 1.64740 1.14543 1.06932 1.22092 1.00323 0.91247 0.86757 1.22224 1.05214 0.91708 0.93488 0.82078 1.20678 0.79906 0.84574 0.83196 1.90714 1.33867 1.85488 1.31980 1.43429 1.38659 1.05508 1.42817 1.17463 0.97691 0.84778 0.91539 1.21084 1.07321 0.99564 0.92903 1.21019 0.95907 0.90110 1.00335 1.20568 1.09594 1.00265 0.91752 1.19383 0.94340 0.85251 0.92346 1.83557 1.81090 1.28267 1.21973 1.20668 1.50049 0.96142 0.80403 0.89904 1.25233 0.95520 1.02455 0.95485 1.69726 1.48451 1.30945 1.07132 0.85261 0.79513 0.77670 0.78596 1.19039 1.19539 1.18648 1.20939 1.12911 0.92483 1.01112 1.22396 1.05007 0.95272 0.95905 1.21115 0.76496 0.87998 0.84247 1.90713 1.55912 1.76080 1.22943 0.92054 0.94938 0.89350 0.90819 0.86827 0.86259 0.90406 0.73798 0.84126 0.82349 0.85110 0.90641 0.86239 0.88376 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 71.98 0.74 -1.60 16 2 C 0.12 1.53 6.65 86.38 0.57 2.11 16 3 N -0.61 -10.23 2.93 -817.88 -2.40 -12.63 16 4 C 0.12 1.55 6.69 86.83 0.58 2.13 16 5 C -0.11 -1.38 3.54 -10.48 -0.04 -1.42 16 6 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 7 C 0.53 11.32 6.90 87.66 0.60 11.92 16 8 O -0.54 -15.12 13.00 -3.05 -0.04 -15.16 16 9 N -0.66 -15.78 5.32 -303.56 -1.62 -17.40 16 10 C 0.18 5.94 6.28 38.14 0.24 6.18 16 11 C -0.19 -5.90 8.69 22.42 0.19 -5.71 16 12 C -0.06 -1.69 10.03 22.23 0.22 -1.46 16 13 C -0.20 -7.48 9.99 22.41 0.22 -7.25 16 14 C 0.14 6.13 6.64 22.56 0.15 6.28 16 15 O -0.24 -12.68 8.58 -22.72 -0.20 -12.87 16 16 C -0.40 -22.54 9.90 67.92 0.67 -21.86 16 17 H 0.08 4.89 5.53 -2.91 -0.02 4.87 16 18 C 0.01 0.66 5.49 84.83 0.47 1.12 16 19 N -0.92 -53.87 13.96 21.61 0.30 -53.57 16 20 Si 0.97 44.48 28.62 68.60 1.96 46.44 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 24 C -0.25 -10.38 9.05 22.51 0.20 -10.18 16 25 C -0.15 -2.50 6.40 30.61 0.20 -2.30 16 26 C 0.51 11.62 8.02 87.92 0.71 12.33 16 27 O -0.58 -18.28 17.59 -3.03 -0.05 -18.33 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.13 7.93 -2.38 -0.02 1.11 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.33 7.01 -2.39 -0.02 1.31 16 35 H 0.42 7.79 8.82 -92.71 -0.82 6.97 16 36 H 0.14 4.09 6.27 -2.91 -0.02 4.07 16 37 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 39 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 40 H 0.12 5.26 5.72 -2.91 -0.02 5.25 16 41 H 0.10 2.02 7.89 -2.38 -0.02 2.00 16 42 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.98 356.45 3.94 -72.04 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.24 Total: 21.20 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 5.73 Total: -9.72 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -3.71 Total: -83.59 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.29 Total: -46.36 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.96 Total: 46.44 kcal Total: -75.98 3.94 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049297911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.424 kcal (2) G-P(sol) polarization free energy of solvation -75.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds