Wall clock time and date at job start Tue Mar 31 2020 13:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46809 * 2 1 4 4 C 1.46499 * 119.99994 * 269.99570 * 3 2 1 5 5 C 1.50701 * 109.47693 * 270.00438 * 4 3 2 6 6 H 1.08007 * 119.99346 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00221 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46885 * 90.00085 * 9 7 5 11 11 H 1.48497 * 109.47451 * 210.00407 * 9 7 5 12 12 H 1.48500 * 109.47164 * 330.00511 * 9 7 5 13 13 C 1.34780 * 120.00120 * 90.00647 * 3 2 1 14 14 O 1.21283 * 120.00121 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99871 * 359.97438 * 13 3 2 16 16 O 1.42897 * 109.47155 * 180.02562 * 15 13 3 17 17 C 1.35847 * 117.00316 * 180.02562 * 16 15 13 18 18 C 1.38804 * 119.91787 * 0.02562 * 17 16 15 19 19 C 1.37820 * 120.15551 * 180.02562 * 18 17 16 20 20 C 1.39735 * 119.99270 * 359.97438 * 19 18 17 21 21 C 1.43205 * 120.07540 * 180.02562 * 20 19 18 22 22 N 9.75041 * 89.50220 * 91.41064 * 2 1 3 23 23 C 1.39749 * 119.84798 * 359.72750 * 20 19 18 24 24 C 1.38172 * 119.84384 * 0.53008 * 23 20 19 25 25 O 1.35991 * 119.99794 * 179.76940 * 24 23 20 26 26 C 1.42903 * 117.00364 * 359.72321 * 25 24 23 27 27 H 1.09001 * 109.46918 * 299.99934 * 1 2 3 28 28 H 1.09002 * 109.47422 * 59.99954 * 1 2 3 29 29 H 1.08997 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46918 * 240.00065 * 2 1 3 31 31 H 1.08994 * 109.47078 * 120.00102 * 2 1 3 32 32 H 1.09003 * 109.47378 * 30.01045 * 4 3 2 33 33 H 1.09009 * 109.46862 * 150.00139 * 4 3 2 34 34 H 0.97000 * 120.00089 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47177 * 60.00693 * 15 13 3 36 36 H 1.08998 * 109.47239 * 300.00576 * 15 13 3 37 37 H 1.08000 * 119.92265 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.00644 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.08206 * 180.29401 * 23 20 19 40 40 H 1.09002 * 109.47382 * 179.97438 * 26 25 24 41 41 H 1.09001 * 109.46938 * 59.99845 * 26 25 24 42 42 H 1.09004 * 109.46926 * 299.99967 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1490 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9134 2.0968 -3.4170 10 1 5.9774 0.8754 -4.2592 11 1 6.3920 3.2640 -4.2004 12 1 6.7735 1.9180 -2.2197 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9915 1.3063 2.4723 16 8 2.3006 2.1819 3.5584 17 6 2.1277 1.6924 4.8138 18 6 1.6699 0.3944 4.9937 19 6 1.4922 -0.1070 6.2651 20 6 1.7736 0.6916 7.3767 21 6 1.5901 0.1722 8.6985 22 7 1.4453 -0.2400 9.7471 23 6 2.2404 1.9963 7.1954 24 6 2.4111 2.4942 5.9179 25 8 2.8608 3.7650 5.7379 26 6 3.1309 4.5304 6.9140 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 3.6748 3.5156 -4.4444 35 1 2.6214 0.4186 2.5302 36 1 0.9434 1.0124 2.5299 37 1 1.4525 -0.2240 4.1355 38 1 1.1363 -1.1174 6.4024 39 1 2.4636 2.6153 8.0518 40 1 3.4823 5.5222 6.6294 41 1 3.8974 4.0295 7.5054 42 1 2.2193 4.6231 7.5044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053235484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:06 Heat of formation + Delta-G solvation = -45.144861 kcal Electronic energy + Delta-G solvation = -25812.293753 eV Core-core repulsion = 21952.157399 eV Total energy + Delta-G solvation = -3860.136354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96205 -39.44717 -38.29040 -37.76734 -36.15965 -35.35899 -32.86954 -31.04062 -30.83175 -30.20505 -28.86932 -27.61420 -26.56037 -23.79116 -23.14134 -23.05888 -22.14836 -19.77916 -18.64546 -18.39988 -17.09921 -16.74232 -16.58427 -16.35715 -16.07501 -15.72248 -15.50872 -14.95382 -14.54023 -14.30663 -14.17791 -14.00209 -13.91433 -13.60664 -13.42577 -13.02694 -12.74844 -12.70877 -12.48356 -12.20783 -12.09469 -11.82327 -11.66570 -11.51907 -11.36295 -11.26002 -11.11883 -10.95479 -10.77450 -10.57837 -10.16564 -9.68211 -9.19111 -9.01198 -8.46428 -8.13504 -7.78123 -6.07467 -4.12407 0.45717 0.92805 2.36079 2.62548 2.70587 2.99797 3.22332 3.28753 3.36123 3.40885 3.50358 3.56334 3.93559 4.38051 4.43700 4.50918 4.71177 4.75307 4.85608 4.94099 4.95800 5.00389 5.08185 5.19427 5.25743 5.27797 5.30295 5.50606 5.51369 5.65548 5.73951 5.88271 5.90752 6.11820 6.13719 6.38297 6.75349 6.98392 7.18234 7.28795 7.37825 7.46172 7.88456 8.18307 8.26973 8.83178 8.97649 9.52803 11.00693 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.002830 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.283676 B = 9890.510275 C =10678.559461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.513 6.513 15 C 0.035 3.965 16 O -0.268 6.268 17 C 0.144 3.856 18 C -0.183 4.183 19 C -0.057 4.057 20 C -0.041 4.041 21 C 0.263 3.737 22 N -0.426 5.426 23 C -0.128 4.128 24 C 0.101 3.899 25 O -0.294 6.294 26 C 0.023 3.977 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 -6.508 18.273 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.291 3.709 14 O -0.388 6.388 15 C -0.043 4.043 16 O -0.178 6.178 17 C 0.095 3.905 18 C -0.202 4.202 19 C -0.078 4.078 20 C -0.045 4.045 21 C -0.052 4.052 22 N -0.102 5.102 23 C -0.149 4.149 24 C 0.055 3.945 25 O -0.207 6.207 26 C -0.072 4.072 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.662 -6.086 19.443 21.145 hybrid contribution 0.933 -0.290 -0.578 1.135 sum -4.728 -6.377 18.865 20.467 Atomic orbital electron populations 1.22251 0.96565 1.01631 1.02540 1.21489 0.93679 0.84057 1.02937 1.48205 1.64009 1.13344 1.07152 1.19327 0.96457 0.93735 0.77539 1.21417 0.96853 1.32125 1.06308 0.92395 1.24931 0.97905 0.94839 0.96396 1.69927 1.35752 1.33303 1.14300 0.86489 0.84616 0.77676 0.78611 1.20648 1.21068 1.19842 1.19634 0.79867 0.87185 0.84178 1.90745 1.44036 1.17455 1.86579 1.22869 1.01914 0.93510 0.86020 1.86319 1.80993 1.39874 1.10636 1.18685 0.96038 0.91491 0.84271 1.21059 1.06043 0.94338 0.98771 1.20844 0.97353 0.99445 0.90195 1.15567 1.08542 0.94376 0.86020 1.25600 0.93413 0.93519 0.92651 1.81260 1.09408 1.08212 1.11291 1.20962 1.02816 0.95399 0.95724 1.17993 1.00077 0.85785 0.90655 1.86338 1.80117 1.21207 1.33016 1.23149 1.00486 0.96194 0.87362 0.93098 0.91749 0.91929 0.89449 0.91894 0.94657 0.93711 0.92660 0.89152 0.89241 0.83432 0.84409 0.83864 0.87764 0.92589 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.10 1.43 5.93 -4.04 -0.02 1.41 16 3 N -0.59 -11.70 2.46 -175.06 -0.43 -12.13 16 4 C 0.25 6.23 5.16 -5.19 -0.03 6.20 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.88 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.51 10.16 7.75 -10.98 -0.09 10.08 16 14 O -0.51 -13.09 16.08 -14.36 -0.23 -13.33 16 15 C 0.04 0.49 3.77 36.00 0.14 0.62 16 16 O -0.27 -4.21 9.44 -46.94 -0.44 -4.66 16 17 C 0.14 1.73 6.71 -38.95 -0.26 1.47 16 18 C -0.18 -1.57 9.01 -39.52 -0.36 -1.93 16 19 C -0.06 -0.43 9.75 -39.18 -0.38 -0.81 16 20 C -0.04 -0.35 5.74 -106.85 -0.61 -0.96 16 21 C 0.26 2.56 15.33 -22.47 -0.34 2.21 16 22 N -0.43 -5.06 18.54 41.84 0.78 -4.29 16 23 C -0.13 -1.11 8.74 -39.04 -0.34 -1.45 16 24 C 0.10 1.15 6.69 -39.18 -0.26 0.89 16 25 O -0.29 -3.71 10.27 -34.39 -0.35 -4.06 16 26 C 0.02 0.18 9.81 101.05 0.99 1.17 16 27 H 0.05 0.54 7.22 -51.93 -0.37 0.16 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 35 H 0.09 0.99 6.91 -51.93 -0.36 0.63 16 36 H 0.09 0.93 6.70 -51.93 -0.35 0.58 16 37 H 0.15 0.93 6.27 -52.49 -0.33 0.60 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.14 0.94 6.28 -52.49 -0.33 0.61 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 42 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -35.76 367.71 -6.36 -42.12 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -5.33 Total: -4.39 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.61 Total: 4.06 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 1.08 Total: -41.77 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.03 Total: -22.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.76 -6.36 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053235484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.021 kcal (2) G-P(sol) polarization free energy of solvation -35.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds