Wall clock time and date at job start Tue Mar 31 2020 13:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46809 * 2 1 4 4 C 1.46499 * 119.99994 * 269.99570 * 3 2 1 5 5 C 1.50701 * 109.47693 * 270.00438 * 4 3 2 6 6 H 1.08007 * 119.99346 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00221 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46885 * 90.00085 * 9 7 5 11 11 H 1.48497 * 109.47451 * 210.00407 * 9 7 5 12 12 H 1.48500 * 109.47164 * 330.00511 * 9 7 5 13 13 C 1.34780 * 120.00120 * 90.00647 * 3 2 1 14 14 O 1.21283 * 120.00121 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99871 * 359.97438 * 13 3 2 16 16 O 1.42897 * 109.47155 * 180.02562 * 15 13 3 17 17 C 1.35847 * 117.00316 * 180.02562 * 16 15 13 18 18 C 1.38804 * 119.91787 * 0.02562 * 17 16 15 19 19 C 1.37820 * 120.15551 * 180.02562 * 18 17 16 20 20 C 1.39735 * 119.99270 * 359.97438 * 19 18 17 21 21 C 1.43205 * 120.07540 * 180.02562 * 20 19 18 22 22 N 9.75041 * 89.50220 * 91.41064 * 2 1 3 23 23 C 1.39749 * 119.84798 * 359.72750 * 20 19 18 24 24 C 1.38172 * 119.84384 * 0.53008 * 23 20 19 25 25 O 1.35991 * 119.99794 * 179.76940 * 24 23 20 26 26 C 1.42903 * 117.00364 * 359.72321 * 25 24 23 27 27 H 1.09001 * 109.46918 * 299.99934 * 1 2 3 28 28 H 1.09002 * 109.47422 * 59.99954 * 1 2 3 29 29 H 1.08997 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46918 * 240.00065 * 2 1 3 31 31 H 1.08994 * 109.47078 * 120.00102 * 2 1 3 32 32 H 1.09003 * 109.47378 * 30.01045 * 4 3 2 33 33 H 1.09009 * 109.46862 * 150.00139 * 4 3 2 34 34 H 0.97000 * 120.00089 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47177 * 60.00693 * 15 13 3 36 36 H 1.08998 * 109.47239 * 300.00576 * 15 13 3 37 37 H 1.08000 * 119.92265 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.00644 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.08206 * 180.29401 * 23 20 19 40 40 H 1.09002 * 109.47382 * 179.97438 * 26 25 24 41 41 H 1.09001 * 109.46938 * 59.99845 * 26 25 24 42 42 H 1.09004 * 109.46926 * 299.99967 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1490 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9134 2.0968 -3.4170 10 1 5.9774 0.8754 -4.2592 11 1 6.3920 3.2640 -4.2004 12 1 6.7735 1.9180 -2.2197 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9915 1.3063 2.4723 16 8 2.3006 2.1819 3.5584 17 6 2.1277 1.6924 4.8138 18 6 1.6699 0.3944 4.9937 19 6 1.4922 -0.1070 6.2651 20 6 1.7736 0.6916 7.3767 21 6 1.5901 0.1722 8.6985 22 7 1.4453 -0.2400 9.7471 23 6 2.2404 1.9963 7.1954 24 6 2.4111 2.4942 5.9179 25 8 2.8608 3.7650 5.7379 26 6 3.1309 4.5304 6.9140 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 3.6748 3.5156 -4.4444 35 1 2.6214 0.4186 2.5302 36 1 0.9434 1.0124 2.5299 37 1 1.4525 -0.2240 4.1355 38 1 1.1363 -1.1174 6.4024 39 1 2.4636 2.6153 8.0518 40 1 3.4823 5.5222 6.6294 41 1 3.8974 4.0295 7.5054 42 1 2.2193 4.6231 7.5044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053235484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:05 Heat of formation + Delta-G solvation = -68.123030 kcal Electronic energy + Delta-G solvation = -25813.290161 eV Core-core repulsion = 21952.157399 eV Total energy + Delta-G solvation = -3861.132762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78827 -40.74928 -39.32078 -38.60050 -37.05706 -36.85408 -34.90664 -31.92674 -31.63538 -31.45240 -30.15067 -28.32239 -28.14624 -25.04945 -24.41257 -24.09638 -23.16699 -20.55330 -20.00637 -19.35397 -18.61351 -18.02545 -17.59185 -17.42459 -17.32530 -16.94822 -16.56359 -16.20780 -15.68428 -15.50609 -15.10349 -14.93971 -14.74676 -14.64308 -14.56931 -14.29234 -14.07979 -13.58564 -13.45172 -13.35121 -13.27150 -13.20781 -13.03926 -12.65409 -12.50904 -12.35587 -12.23275 -12.22257 -12.08441 -11.93714 -11.76482 -11.69328 -10.62384 -10.61472 -9.85610 -9.46859 -8.92455 -8.21071 -6.35420 -0.26548 0.28192 1.37860 1.41411 1.50905 1.60282 1.64956 1.74438 1.88223 2.35649 2.38687 2.66480 2.80861 2.84882 3.09066 3.50390 3.80427 3.87118 4.03061 4.10239 4.12195 4.13620 4.25921 4.39242 4.42591 4.47633 4.61967 4.69692 4.74113 4.84985 4.96617 5.03848 5.10122 5.12479 5.22734 5.24204 5.46320 5.48955 5.58788 5.83903 6.02735 6.07372 6.43845 6.53267 6.71052 6.76923 7.28742 7.44552 8.86172 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.002830 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.283676 B = 9890.510275 C =10678.559461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.597 5.597 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.494 3.506 14 O -0.587 6.587 15 C 0.050 3.950 16 O -0.310 6.310 17 C 0.114 3.886 18 C -0.170 4.170 19 C -0.044 4.044 20 C -0.041 4.041 21 C 0.287 3.713 22 N -0.464 5.464 23 C -0.117 4.117 24 C 0.079 3.921 25 O -0.334 6.334 26 C 0.015 3.985 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.028 0.972 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.161 0.839 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 -9.756 19.931 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.329 5.329 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.028 4.028 16 O -0.223 6.223 17 C 0.067 3.933 18 C -0.188 4.188 19 C -0.064 4.064 20 C -0.045 4.045 21 C -0.027 4.027 22 N -0.140 5.140 23 C -0.138 4.138 24 C 0.033 3.967 25 O -0.248 6.248 26 C -0.079 4.079 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.046 0.954 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.196 0.804 38 H 0.188 0.812 39 H 0.178 0.822 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.892 -9.404 21.128 23.865 hybrid contribution 0.948 0.726 -1.021 1.571 sum -4.944 -8.677 20.108 22.451 Atomic orbital electron populations 1.22202 0.94355 1.03853 1.01861 1.21913 0.95488 0.80720 1.04739 1.48205 1.63776 1.15431 1.05500 1.18736 0.95452 0.91521 0.80179 1.21719 0.97893 1.31998 1.06421 0.92622 1.25859 1.02344 0.94501 0.96553 1.70051 1.37802 1.34230 1.14784 0.85423 0.79061 0.78175 0.78206 1.18618 1.20909 1.19785 1.20823 0.78109 0.86637 0.86260 1.90701 1.47264 1.20823 1.87864 1.22798 1.05025 0.92718 0.82231 1.86251 1.82284 1.41518 1.12207 1.19082 0.98125 0.93236 0.82851 1.21360 1.04325 0.92875 1.00250 1.21187 0.95612 1.00476 0.89145 1.15653 1.08575 0.94383 0.85844 1.25616 0.92248 0.92476 0.92378 1.81300 1.10812 1.09545 1.12371 1.21078 1.01769 0.95698 0.95298 1.18284 1.01182 0.85683 0.91565 1.86280 1.80703 1.22284 1.35565 1.23386 1.01833 0.96108 0.86600 0.91768 0.94541 0.88117 0.90561 0.87169 0.95393 0.98779 0.92448 0.85492 0.85114 0.80419 0.81193 0.82153 0.87426 0.91055 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 10.24 71.98 0.74 -2.57 16 2 C 0.09 2.38 5.93 86.38 0.51 2.89 16 3 N -0.60 -23.75 2.46 -826.15 -2.03 -25.78 16 4 C 0.26 13.87 5.16 85.63 0.44 14.31 16 5 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 6 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 9 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 10 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.49 20.05 7.75 87.66 0.68 20.73 16 14 O -0.59 -31.76 16.08 16.00 0.26 -31.51 16 15 C 0.05 1.25 3.77 71.24 0.27 1.52 16 16 O -0.31 -9.58 9.44 -65.36 -0.62 -10.20 16 17 C 0.11 2.55 6.71 22.68 0.15 2.70 16 18 C -0.17 -2.18 9.01 22.31 0.20 -1.98 16 19 C -0.04 -0.45 9.75 22.53 0.22 -0.23 16 20 C -0.04 -0.56 5.74 -21.30 -0.12 -0.68 16 21 C 0.29 4.79 15.33 88.33 1.35 6.15 16 22 N -0.46 -10.09 18.54 19.00 0.35 -9.73 16 23 C -0.12 -1.81 8.74 22.62 0.20 -1.61 16 24 C 0.08 1.72 6.69 22.53 0.15 1.87 16 25 O -0.33 -8.63 10.27 -79.43 -0.82 -9.45 16 26 C 0.01 0.22 9.81 113.37 1.11 1.33 16 27 H 0.06 1.13 7.22 -2.39 -0.02 1.11 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 31 H 0.11 1.79 6.44 -2.39 -0.02 1.78 16 32 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 33 H -0.01 -0.37 7.42 -2.38 -0.02 -0.39 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.13 2.21 6.91 -2.39 -0.02 2.19 16 36 H 0.13 2.14 6.70 -2.39 -0.02 2.12 16 37 H 0.18 1.12 6.27 -2.91 -0.02 1.10 16 38 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 39 H 0.16 1.77 6.28 -2.91 -0.02 1.76 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 42 H 0.07 0.79 7.67 -2.38 -0.02 0.77 16 Total: -1.00 -86.12 367.71 7.12 -79.00 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 1.05 Total: 2.04 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.61 Total: 14.73 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -1.39 Total: -91.25 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -1.18 Total: -51.15 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -86.12 7.12 -79.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053235484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.877 kcal (2) G-P(sol) polarization free energy of solvation -86.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds