Wall clock time and date at job start Tue Mar 31 2020 13:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46907 * 109.46873 * 2 1 4 4 C 1.46899 * 111.00084 * 164.22548 * 3 2 1 5 5 C 1.50705 * 109.46880 * 293.95232 * 4 3 2 6 6 H 1.08002 * 119.99947 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00089 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00070 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99840 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46984 * 90.00115 * 9 7 5 11 11 H 1.48503 * 109.47282 * 210.00001 * 9 7 5 12 12 H 1.48502 * 109.47215 * 330.00328 * 9 7 5 13 13 C 1.46897 * 110.99794 * 288.17589 * 3 2 1 14 14 N 1.46501 * 109.47413 * 151.45874 * 13 3 2 15 15 C 1.39293 * 124.31854 * 100.43412 * 14 13 3 16 16 C 1.38588 * 131.43346 * 0.02562 * 15 14 13 17 17 C 1.38986 * 120.00541 * 180.02562 * 16 15 14 18 18 O 1.35634 * 119.72342 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00151 * 180.02562 * 18 17 16 20 20 C 1.39192 * 120.55021 * 359.96462 * 17 16 15 21 21 C 1.36676 * 120.16441 * 0.02562 * 20 17 16 22 22 C 1.39704 * 119.89711 * 0.02562 * 21 20 17 23 23 C 1.47151 * 133.00229 * 179.97438 * 22 21 20 24 24 O 1.21405 * 127.55220 * 0.02569 * 23 22 21 25 25 C 1.34426 * 124.32031 * 280.14300 * 14 13 3 26 26 O 1.21315 * 126.21729 * 359.97438 * 25 14 13 27 27 H 1.09001 * 109.47315 * 58.45884 * 1 2 3 28 28 H 1.09004 * 109.46766 * 178.45487 * 1 2 3 29 29 H 1.09003 * 109.47487 * 298.45733 * 1 2 3 30 30 H 1.08998 * 109.47445 * 239.99934 * 2 1 3 31 31 H 1.09003 * 109.47534 * 119.99758 * 2 1 3 32 32 H 1.09003 * 109.47416 * 53.94587 * 4 3 2 33 33 H 1.08995 * 109.47578 * 173.95340 * 4 3 2 34 34 H 0.97001 * 119.99581 * 180.02562 * 8 7 5 35 35 H 1.09008 * 109.47308 * 271.45599 * 13 3 2 36 36 H 1.09000 * 109.47403 * 31.45459 * 13 3 2 37 37 H 1.08000 * 119.99568 * 359.97438 * 16 15 14 38 38 H 1.08996 * 109.47185 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47242 * 300.00387 * 19 18 17 40 40 H 1.09004 * 109.46590 * 60.00402 * 19 18 17 41 41 H 1.08004 * 119.91724 * 179.97438 * 20 17 16 42 42 H 1.07994 * 120.05043 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4394 1.4416 0.3728 5 6 3.6001 1.0045 1.8061 6 1 2.7342 0.7134 2.3822 7 6 4.8526 0.9762 2.3819 8 7 4.9927 0.5952 3.6328 9 14 6.3503 1.4789 1.3852 10 1 6.5832 2.9371 1.5430 11 1 7.5398 0.7325 1.8683 12 1 6.1186 1.1669 -0.0481 13 6 1.7917 2.0239 -1.3030 14 7 1.6302 3.4681 -1.1173 15 6 2.6330 4.4067 -1.3491 16 6 3.9423 4.2625 -1.7796 17 6 4.7512 5.3824 -1.9322 18 8 6.0319 5.2346 -2.3534 19 6 6.8116 6.4245 -2.4895 20 6 4.2577 6.6544 -1.6564 21 6 2.9686 6.8137 -1.2311 22 6 2.1447 5.6966 -1.0724 23 6 0.7471 5.5335 -0.6419 24 8 -0.0323 6.4043 -0.3128 25 6 0.4937 4.0571 -0.7068 26 8 -0.5467 3.4957 -0.4345 27 1 -0.3634 0.5376 -0.8758 28 1 -0.3633 -1.0273 -0.0277 29 1 -0.3634 0.4897 0.9035 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.0120 0.7784 -0.2756 33 1 3.8040 2.4626 0.2613 34 1 5.8739 0.5757 4.0380 35 1 2.6448 1.8346 -1.9547 36 1 0.8898 1.6128 -1.7565 37 1 4.3345 3.2797 -1.9959 38 1 7.8133 6.1653 -2.8320 39 1 6.3394 7.0873 -3.2146 40 1 6.8767 6.9284 -1.5251 41 1 4.8954 7.5176 -1.7781 42 1 2.5878 7.8013 -1.0173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060061383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:18 Heat of formation + Delta-G solvation = -33.023288 kcal Electronic energy + Delta-G solvation = -27355.798789 eV Core-core repulsion = 23496.188066 eV Total energy + Delta-G solvation = -3859.610723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.83284 -39.97557 -38.42804 -37.82358 -37.02565 -35.19175 -32.64947 -31.52568 -30.62365 -29.95699 -28.00170 -27.59983 -26.22614 -24.23366 -22.67947 -22.25406 -21.62065 -20.66496 -19.69551 -18.35647 -17.45822 -17.04010 -16.90087 -16.30260 -16.00568 -15.94430 -15.71213 -15.10340 -14.91026 -14.54932 -14.16925 -13.88359 -13.68802 -13.51956 -13.37427 -13.21298 -12.97792 -12.78853 -12.48507 -12.45535 -12.03007 -11.78606 -11.66957 -11.28587 -11.23374 -11.11020 -10.74514 -10.65440 -10.54280 -10.14329 -9.97584 -9.48150 -9.33573 -8.69705 -8.61358 -8.19178 -7.66479 -6.11601 -4.09997 0.10478 1.10671 1.71243 2.36298 2.92955 3.12523 3.22801 3.29733 3.30905 3.52377 3.65855 4.34753 4.37725 4.49971 4.57681 4.68694 4.78165 4.87804 4.94637 4.99523 5.15980 5.20730 5.21126 5.37175 5.42359 5.62044 5.73886 5.82887 5.89166 5.99201 6.06974 6.14083 6.23375 6.30685 6.53822 6.63122 6.75277 6.82063 6.86434 6.99682 7.07653 7.44636 7.69781 7.73621 7.88445 8.54446 8.96966 9.48794 11.01213 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.006839 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.809390 B = 4093.141301 C = 6336.833196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 N -0.539 5.539 4 C 0.161 3.839 5 C -0.512 4.512 6 H 0.082 0.918 7 C 0.071 3.929 8 N -0.896 5.896 9 Si 0.871 3.129 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.269 3.731 14 N -0.531 5.531 15 C 0.254 3.746 16 C -0.189 4.189 17 C 0.206 3.794 18 O -0.307 6.307 19 C 0.024 3.976 20 C -0.253 4.253 21 C 0.037 3.963 22 C -0.285 4.285 23 C 0.398 3.602 24 O -0.389 6.389 25 C 0.501 3.499 26 O -0.439 6.439 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.098 0.902 32 H -0.007 1.007 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.142 0.858 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.140 0.860 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 10.703 -15.924 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 N -0.265 5.265 4 C 0.035 3.965 5 C -0.550 4.550 6 H 0.100 0.900 7 C -0.131 4.131 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.059 3.941 14 N -0.255 5.255 15 C 0.155 3.845 16 C -0.211 4.211 17 C 0.158 3.842 18 O -0.219 6.219 19 C -0.070 4.070 20 C -0.272 4.272 21 C 0.018 3.982 22 C -0.290 4.290 23 C 0.269 3.731 24 O -0.259 6.259 25 C 0.285 3.715 26 O -0.308 6.308 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.116 0.884 32 H 0.010 0.990 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.160 0.840 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.157 0.843 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.031 10.717 -15.120 18.533 hybrid contribution 1.686 -0.062 -0.815 1.873 sum 1.717 10.655 -15.935 19.245 Atomic orbital electron populations 1.21814 0.95743 1.00407 1.02315 1.21971 0.94676 0.87926 1.01853 1.61580 1.22016 1.17791 1.25121 1.20296 0.82404 0.96100 0.97687 1.20966 0.94855 1.44562 0.94581 0.89997 1.24882 0.98607 0.94845 0.94761 1.69889 1.23602 1.47757 1.12234 0.86929 0.83105 0.79207 0.80978 1.20013 1.21120 1.19133 1.22170 1.02109 0.77114 0.92726 1.45871 1.10327 1.07510 1.61765 1.17977 0.89003 0.87546 0.90010 1.19358 0.91084 0.99000 1.11680 1.18854 0.83371 0.92879 0.89060 1.86055 1.20769 1.34707 1.80337 1.23189 0.95407 0.86548 1.01902 1.20859 0.97812 0.96273 1.12276 1.20206 0.91164 0.97434 0.89373 1.20350 0.97441 0.93821 1.17347 1.22233 0.87149 0.89310 0.74388 1.90572 1.53476 1.48568 1.33328 1.20967 0.83418 0.89972 0.77192 1.90764 1.26632 1.71333 1.42056 0.93525 0.92970 0.91849 0.95765 0.88370 0.98974 0.95693 0.92582 0.91535 0.88420 0.84017 0.87873 0.92104 0.91987 0.84251 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.99 37.16 0.37 -1.96 16 2 C 0.06 1.15 5.48 -3.82 -0.02 1.13 16 3 N -0.54 -10.84 4.55 -239.97 -1.09 -11.93 16 4 C 0.16 3.70 3.62 -4.97 -0.02 3.69 16 5 C -0.51 -14.18 8.84 -34.44 -0.30 -14.49 16 6 H 0.08 2.51 7.50 -52.49 -0.39 2.11 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 9 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.27 4.39 5.43 -63.32 -0.34 4.04 16 14 N -0.53 -8.80 2.98 -116.84 -0.35 -9.15 16 15 C 0.25 3.86 6.31 -83.42 -0.53 3.34 16 16 C -0.19 -2.71 8.99 -39.18 -0.35 -3.06 16 17 C 0.21 2.58 6.69 -38.95 -0.26 2.32 16 18 O -0.31 -3.59 10.48 -18.60 -0.19 -3.79 16 19 C 0.02 0.17 9.80 101.05 0.99 1.16 16 20 C -0.25 -2.62 8.97 -39.79 -0.36 -2.97 16 21 C 0.04 0.42 10.05 -39.60 -0.40 0.02 16 22 C -0.28 -4.08 6.33 -104.81 -0.66 -4.75 16 23 C 0.40 6.50 7.95 -31.06 -0.25 6.25 16 24 O -0.39 -6.85 18.03 5.45 0.10 -6.75 16 25 C 0.50 8.89 8.17 -11.51 -0.09 8.79 16 26 O -0.44 -8.75 17.81 5.52 0.10 -8.66 16 27 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.10 2.04 6.59 -51.93 -0.34 1.70 16 32 H -0.01 -0.17 7.18 -51.93 -0.37 -0.54 16 33 H 0.03 0.58 6.34 -51.93 -0.33 0.25 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.07 0.96 7.06 -51.92 -0.37 0.60 16 36 H 0.10 1.44 6.18 -51.93 -0.32 1.12 16 37 H 0.14 2.03 7.51 -52.49 -0.39 1.64 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.31 7.64 -51.93 -0.40 -0.09 16 40 H 0.06 0.39 7.64 -51.93 -0.40 -0.01 16 41 H 0.14 0.99 6.25 -52.48 -0.33 0.67 16 42 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -33.37 353.40 -7.59 -40.95 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.26 Total: -1.40 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.32 Total: 5.44 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.67 Total: -47.42 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.00 Total: -19.19 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.37 -7.59 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060061383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.930 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds