Wall clock time and date at job start Tue Mar 31 2020 13:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46907 * 109.46873 * 2 1 4 4 C 1.46899 * 111.00084 * 164.22548 * 3 2 1 5 5 C 1.50705 * 109.46880 * 293.95232 * 4 3 2 6 6 H 1.08002 * 119.99947 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00089 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00070 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99840 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46984 * 90.00115 * 9 7 5 11 11 H 1.48503 * 109.47282 * 210.00001 * 9 7 5 12 12 H 1.48502 * 109.47215 * 330.00328 * 9 7 5 13 13 C 1.46897 * 110.99794 * 288.17589 * 3 2 1 14 14 N 1.46501 * 109.47413 * 151.45874 * 13 3 2 15 15 C 1.39293 * 124.31854 * 100.43412 * 14 13 3 16 16 C 1.38588 * 131.43346 * 0.02562 * 15 14 13 17 17 C 1.38986 * 120.00541 * 180.02562 * 16 15 14 18 18 O 1.35634 * 119.72342 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00151 * 180.02562 * 18 17 16 20 20 C 1.39192 * 120.55021 * 359.96462 * 17 16 15 21 21 C 1.36676 * 120.16441 * 0.02562 * 20 17 16 22 22 C 1.39704 * 119.89711 * 0.02562 * 21 20 17 23 23 C 1.47151 * 133.00229 * 179.97438 * 22 21 20 24 24 O 1.21405 * 127.55220 * 0.02569 * 23 22 21 25 25 C 1.34426 * 124.32031 * 280.14300 * 14 13 3 26 26 O 1.21315 * 126.21729 * 359.97438 * 25 14 13 27 27 H 1.09001 * 109.47315 * 58.45884 * 1 2 3 28 28 H 1.09004 * 109.46766 * 178.45487 * 1 2 3 29 29 H 1.09003 * 109.47487 * 298.45733 * 1 2 3 30 30 H 1.08998 * 109.47445 * 239.99934 * 2 1 3 31 31 H 1.09003 * 109.47534 * 119.99758 * 2 1 3 32 32 H 1.09003 * 109.47416 * 53.94587 * 4 3 2 33 33 H 1.08995 * 109.47578 * 173.95340 * 4 3 2 34 34 H 0.97001 * 119.99581 * 180.02562 * 8 7 5 35 35 H 1.09008 * 109.47308 * 271.45599 * 13 3 2 36 36 H 1.09000 * 109.47403 * 31.45459 * 13 3 2 37 37 H 1.08000 * 119.99568 * 359.97438 * 16 15 14 38 38 H 1.08996 * 109.47185 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47242 * 300.00387 * 19 18 17 40 40 H 1.09004 * 109.46590 * 60.00402 * 19 18 17 41 41 H 1.08004 * 119.91724 * 179.97438 * 20 17 16 42 42 H 1.07994 * 120.05043 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4394 1.4416 0.3728 5 6 3.6001 1.0045 1.8061 6 1 2.7342 0.7134 2.3822 7 6 4.8526 0.9762 2.3819 8 7 4.9927 0.5952 3.6328 9 14 6.3503 1.4789 1.3852 10 1 6.5832 2.9371 1.5430 11 1 7.5398 0.7325 1.8683 12 1 6.1186 1.1669 -0.0481 13 6 1.7917 2.0239 -1.3030 14 7 1.6302 3.4681 -1.1173 15 6 2.6330 4.4067 -1.3491 16 6 3.9423 4.2625 -1.7796 17 6 4.7512 5.3824 -1.9322 18 8 6.0319 5.2346 -2.3534 19 6 6.8116 6.4245 -2.4895 20 6 4.2577 6.6544 -1.6564 21 6 2.9686 6.8137 -1.2311 22 6 2.1447 5.6966 -1.0724 23 6 0.7471 5.5335 -0.6419 24 8 -0.0323 6.4043 -0.3128 25 6 0.4937 4.0571 -0.7068 26 8 -0.5467 3.4957 -0.4345 27 1 -0.3634 0.5376 -0.8758 28 1 -0.3633 -1.0273 -0.0277 29 1 -0.3634 0.4897 0.9035 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.0120 0.7784 -0.2756 33 1 3.8040 2.4626 0.2613 34 1 5.8739 0.5757 4.0380 35 1 2.6448 1.8346 -1.9547 36 1 0.8898 1.6128 -1.7565 37 1 4.3345 3.2797 -1.9959 38 1 7.8133 6.1653 -2.8320 39 1 6.3394 7.0873 -3.2146 40 1 6.8767 6.9284 -1.5251 41 1 4.8954 7.5176 -1.7781 42 1 2.5878 7.8013 -1.0173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060061383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:17 Heat of formation + Delta-G solvation = -56.625089 kcal Electronic energy + Delta-G solvation = -27356.822240 eV Core-core repulsion = 23496.188066 eV Total energy + Delta-G solvation = -3860.634174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.02181 -40.90298 -39.75361 -39.01355 -38.46962 -36.34709 -34.74190 -32.59659 -31.88481 -31.44801 -29.23337 -28.62558 -27.44949 -25.56704 -24.01593 -23.73122 -22.70982 -22.09628 -21.02096 -19.43491 -19.03402 -18.51438 -18.03537 -17.59608 -17.20661 -16.81693 -16.70079 -16.61817 -16.37530 -16.05767 -15.60930 -15.15602 -14.91135 -14.82376 -14.57356 -14.54452 -14.34615 -14.11200 -13.92863 -13.40895 -13.37479 -13.01799 -12.87821 -12.78801 -12.54137 -12.39403 -12.23178 -11.94498 -11.93383 -11.79672 -11.58013 -11.36898 -10.80367 -10.72201 -9.67014 -9.31766 -9.16176 -8.29842 -6.34019 -1.08050 0.13107 0.61642 1.17306 1.33439 1.34643 1.44551 1.81514 2.06133 2.32270 2.50048 2.58186 3.02420 3.10756 3.31077 3.48345 3.78744 3.80006 4.01996 4.03212 4.12961 4.20078 4.37691 4.40108 4.47003 4.47615 4.62339 4.69893 4.79393 4.81950 4.85321 4.98479 4.99969 5.09434 5.16068 5.19174 5.26462 5.37083 5.49433 5.59703 5.80172 5.93503 6.21170 6.25152 6.47914 6.53915 6.72287 7.29115 8.86903 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.006839 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.809390 B = 4093.141301 C = 6336.833196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 N -0.564 5.564 4 C 0.177 3.823 5 C -0.517 4.517 6 H 0.032 0.968 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.942 3.058 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.241 1.241 13 C 0.269 3.731 14 N -0.532 5.532 15 C 0.233 3.767 16 C -0.204 4.204 17 C 0.209 3.791 18 O -0.323 6.323 19 C 0.010 3.990 20 C -0.235 4.235 21 C 0.046 3.954 22 C -0.296 4.296 23 C 0.400 3.600 24 O -0.411 6.411 25 C 0.492 3.508 26 O -0.476 6.476 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.002 0.998 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.181 0.819 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 12.796 -18.882 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 N -0.290 5.290 4 C 0.050 3.950 5 C -0.555 4.555 6 H 0.051 0.949 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.765 3.235 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.164 1.164 13 C 0.059 3.941 14 N -0.256 5.256 15 C 0.136 3.864 16 C -0.225 4.225 17 C 0.161 3.839 18 O -0.235 6.235 19 C -0.083 4.083 20 C -0.254 4.254 21 C 0.027 3.973 22 C -0.301 4.301 23 C 0.274 3.726 24 O -0.284 6.284 25 C 0.277 3.723 26 O -0.347 6.347 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.019 0.981 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.198 0.802 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.474 12.823 -18.117 22.334 hybrid contribution 1.002 -0.677 0.097 1.213 sum 3.476 12.146 -18.020 22.008 Atomic orbital electron populations 1.21708 0.94143 1.01885 1.01317 1.21928 0.95905 0.87126 1.01298 1.61452 1.20202 1.19181 1.28153 1.19981 0.84579 0.95803 0.94639 1.21205 0.93426 1.44091 0.96803 0.94940 1.25847 1.02293 0.94801 0.95862 1.70062 1.24587 1.49674 1.14518 0.85790 0.78286 0.79001 0.80436 1.19151 1.20824 1.16407 1.22306 1.03806 0.76883 0.91058 1.45829 1.10477 1.07772 1.61534 1.18133 0.89336 0.87443 0.91512 1.19466 0.90911 0.99836 1.12322 1.19006 0.83785 0.93039 0.88120 1.86049 1.20319 1.37425 1.79738 1.23595 0.95816 0.85638 1.03297 1.21273 0.97540 0.96763 1.09855 1.20602 0.91087 0.97691 0.87888 1.20330 0.96313 0.94721 1.18711 1.22273 0.88122 0.88313 0.73903 1.90553 1.54312 1.48672 1.34826 1.21375 0.83340 0.90979 0.76638 1.90728 1.27891 1.72200 1.43913 0.92389 0.90351 0.94733 0.92985 0.92030 0.98053 0.95499 0.92460 0.89086 0.86913 0.84363 0.86215 0.89736 0.90970 0.80195 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.99 71.98 0.72 -3.57 16 2 C 0.06 2.38 5.48 86.30 0.47 2.85 16 3 N -0.56 -22.81 4.55 -913.14 -4.16 -26.97 16 4 C 0.18 8.09 3.62 85.56 0.31 8.40 16 5 C -0.52 -29.67 8.84 25.60 0.23 -29.45 16 6 H 0.03 2.13 7.50 -2.91 -0.02 2.10 16 7 C 0.01 0.54 5.47 84.66 0.46 1.00 16 8 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 9 Si 0.94 42.76 27.47 68.60 1.88 44.64 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 13 C 0.27 8.52 5.43 170.81 0.93 9.45 16 14 N -0.53 -17.46 2.98 -642.15 -1.91 -19.38 16 15 C 0.23 6.79 6.31 38.63 0.24 7.04 16 16 C -0.20 -5.34 8.99 22.53 0.20 -5.14 16 17 C 0.21 4.45 6.69 22.68 0.15 4.60 16 18 O -0.32 -6.22 10.48 -89.47 -0.94 -7.16 16 19 C 0.01 0.09 9.80 113.37 1.11 1.20 16 20 C -0.24 -3.76 8.97 22.13 0.20 -3.56 16 21 C 0.05 0.87 10.05 22.26 0.22 1.09 16 22 C -0.30 -8.03 6.33 -19.99 -0.13 -8.16 16 23 C 0.40 13.12 7.95 27.79 0.22 13.34 16 24 O -0.41 -14.61 18.03 -3.42 -0.06 -14.67 16 25 C 0.49 17.84 8.17 87.47 0.71 18.55 16 26 O -0.48 -19.70 17.81 -3.14 -0.06 -19.75 16 27 H 0.06 1.73 6.54 -2.39 -0.02 1.71 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.61 8.05 -2.39 -0.02 1.59 16 31 H 0.06 2.70 6.59 -2.39 -0.02 2.68 16 32 H 0.00 0.08 7.18 -2.39 -0.02 0.06 16 33 H 0.03 1.23 6.34 -2.39 -0.02 1.21 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.09 2.44 7.06 -2.38 -0.02 2.42 16 36 H 0.11 3.19 6.18 -2.39 -0.01 3.17 16 37 H 0.14 3.64 7.51 -2.91 -0.02 3.62 16 38 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.38 7.64 -2.39 -0.02 0.36 16 40 H 0.07 0.53 7.64 -2.38 -0.02 0.51 16 41 H 0.18 1.40 6.25 -2.91 -0.02 1.38 16 42 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -77.03 353.40 2.12 -74.91 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.00 Total: 9.71 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 6.06 Total: 17.65 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -5.77 Total: -105.33 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.05 Total: -41.58 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.64 kcal Total: -77.03 2.12 -74.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060061383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.290 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds