Wall clock time and date at job start Tue Mar 31 2020 12:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 O 1.42893 * 109.47566 * 179.97438 * 15 13 12 17 17 C 1.35963 * 117.00340 * 180.02562 * 16 15 13 18 18 C 1.38750 * 119.98583 * 0.02562 * 17 16 15 19 19 C 1.38076 * 120.03100 * 180.02562 * 18 17 16 20 20 C 1.38849 * 119.97012 * 359.97438 * 19 18 17 21 21 C 1.38841 * 119.96206 * 0.02562 * 20 19 18 22 22 C 1.38082 * 120.01976 * 359.73992 * 21 20 19 23 23 C 1.50679 * 119.84513 * 179.97438 * 21 20 19 24 24 C 1.52903 * 109.53897 * 326.07503 * 23 21 20 25 25 C 1.50497 * 109.91205 * 48.63611 * 24 23 21 26 26 O 1.21290 * 119.62245 * 144.76711 * 25 24 23 27 27 N 1.34567 * 120.75687 * 324.74203 * 25 24 23 28 28 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 29 29 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 30 30 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 31 31 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 32 32 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 33 33 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 34 34 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 35 35 H 1.07991 * 119.98015 * 359.97438 * 18 17 16 36 36 H 1.07999 * 120.01295 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.00390 * 180.24983 * 22 21 20 38 38 H 1.08994 * 109.46701 * 206.04990 * 23 21 20 39 39 H 1.09003 * 109.44581 * 86.07905 * 23 21 20 40 40 H 1.09006 * 109.39747 * 288.50223 * 24 23 21 41 41 H 1.08995 * 109.40311 * 168.77517 * 24 23 21 42 42 H 0.96993 * 119.78353 * 180.82458 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 8 2.6976 0.1894 -4.6815 17 6 3.1321 -0.2949 -5.8753 18 6 3.5040 -1.6267 -5.9893 19 6 3.9459 -2.1195 -7.2011 20 6 4.0175 -1.2816 -8.3060 21 6 3.6451 0.0510 -8.1910 22 6 3.1988 0.5415 -6.9799 23 6 3.7244 0.9580 -9.3916 24 6 4.9124 0.5498 -10.2634 25 6 4.8899 -0.9367 -10.4971 26 8 5.2598 -1.3817 -11.5631 27 7 4.4645 -1.7780 -9.5368 28 1 -0.3633 0.4106 0.9420 29 1 -0.3632 0.6107 -0.8266 30 1 -0.3633 -1.0211 -0.1156 31 1 2.1697 -1.8615 3.4635 32 1 2.2490 -1.6319 -1.1526 33 1 3.6493 -1.1205 -3.3979 34 1 1.9778 -1.5508 -3.8325 35 1 3.4486 -2.2780 -5.1297 36 1 4.2358 -3.1561 -7.2895 37 1 2.9053 1.5771 -6.8918 38 1 3.8540 1.9883 -9.0606 39 1 2.8043 0.8754 -9.9702 40 1 5.8406 0.8233 -9.7615 41 1 4.8540 1.0677 -11.2207 42 1 4.4672 -2.7343 -9.6982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:17 Heat of formation + Delta-G solvation = -90.682156 kcal Electronic energy + Delta-G solvation = -25309.083437 eV Core-core repulsion = 21446.972438 eV Total energy + Delta-G solvation = -3862.110999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38243 -40.09478 -38.98483 -37.82985 -35.15345 -34.80850 -34.38737 -32.57915 -30.86929 -30.25727 -29.18324 -27.54207 -25.08847 -24.86031 -23.22887 -22.90045 -21.29085 -19.78732 -19.52900 -18.43893 -18.13282 -17.69752 -17.35724 -16.57370 -16.35405 -16.20156 -15.47919 -15.27932 -14.99750 -14.45245 -14.28480 -14.03316 -13.95542 -13.59686 -13.45940 -13.20287 -13.01191 -12.72790 -12.57418 -12.32945 -12.23234 -11.88377 -11.75909 -11.59693 -11.39269 -11.20488 -10.60257 -10.44515 -10.31626 -10.19923 -9.72398 -9.34116 -9.26213 -9.10257 -8.48640 -8.30496 -7.96844 -6.63672 -4.29653 0.82406 0.92497 2.15747 2.63953 2.71694 3.00602 3.36277 3.37369 3.41691 3.55693 3.89207 4.05008 4.19711 4.33437 4.38717 4.45361 4.66087 4.68300 4.79559 4.89796 5.00482 5.03279 5.11295 5.14963 5.26322 5.31891 5.42478 5.53205 5.67486 5.77987 5.98138 6.19073 6.30912 6.36542 6.45480 6.58799 6.75537 6.86880 7.09119 7.21867 7.27870 7.54887 7.60013 8.16455 8.30604 8.59876 8.81263 9.39263 10.75892 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038922 B = 0.002106 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.223372 B =13290.152647 C =13708.249817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H 0.045 0.955 4 C -0.618 4.618 5 H 0.062 0.938 6 C 0.041 3.959 7 N -0.897 5.897 8 Si 1.038 2.962 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.283 1.283 12 N -0.698 5.698 13 C 0.504 3.496 14 O -0.533 6.533 15 C 0.039 3.961 16 O -0.285 6.285 17 C 0.121 3.879 18 C -0.182 4.182 19 C -0.106 4.106 20 C 0.112 3.888 21 C -0.082 4.082 22 C -0.115 4.115 23 C -0.078 4.078 24 C -0.138 4.138 25 C 0.521 3.479 26 O -0.535 6.535 27 N -0.660 5.660 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.270 0.730 32 H 0.394 0.606 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 -1.527 -24.446 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.140 3.860 3 H 0.062 0.938 4 C -0.656 4.656 5 H 0.080 0.920 6 C -0.166 4.166 7 N -0.530 5.530 8 Si 0.865 3.135 9 H -0.209 1.209 10 H -0.192 1.192 11 H -0.209 1.209 12 N -0.348 5.348 13 C 0.287 3.713 14 O -0.410 6.410 15 C -0.040 4.040 16 O -0.196 6.196 17 C 0.074 3.926 18 C -0.202 4.202 19 C -0.126 4.126 20 C 0.017 3.983 21 C -0.084 4.084 22 C -0.134 4.134 23 C -0.115 4.115 24 C -0.178 4.178 25 C 0.309 3.691 26 O -0.411 6.411 27 N -0.305 5.305 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.227 0.773 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.277 0.661 -23.897 24.130 hybrid contribution 0.580 -2.635 -0.872 2.835 sum 3.857 -1.974 -24.770 25.146 Atomic orbital electron populations 1.22455 0.98786 0.99969 1.00207 1.19115 0.90602 0.94331 0.81920 0.93771 1.22072 1.41381 1.11248 0.90916 0.91952 1.25694 0.93857 1.05488 0.91583 1.70830 1.43128 1.08324 1.30677 0.84188 0.77651 0.75256 0.76435 1.20943 1.19168 1.20895 1.46185 1.65342 1.13817 1.09450 1.19903 0.79507 0.87735 0.84182 1.90704 1.49945 1.15622 1.84698 1.22635 1.02740 0.92558 0.86024 1.86210 1.80484 1.37304 1.15641 1.19020 0.95345 0.92134 0.86089 1.21145 1.05253 0.94872 0.98905 1.20532 1.01549 0.99680 0.90850 1.17480 1.01936 0.93269 0.85637 1.19249 1.01084 0.92709 0.95390 1.20106 1.03348 1.00567 0.89390 1.20453 0.98383 0.99420 0.93229 1.21693 1.01276 0.91514 1.03285 1.20758 0.75551 0.89938 0.82809 1.90782 1.46735 1.78927 1.24691 1.43545 1.63043 1.10696 1.13237 0.92271 0.95042 0.93716 0.92014 0.77284 0.89213 0.89317 0.84579 0.85058 0.84107 0.88590 0.89547 0.87723 0.87225 0.75280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.76 37.16 0.33 -3.06 16 2 C 0.24 5.62 2.11 -69.08 -0.15 5.48 16 3 H 0.04 1.12 6.21 -51.93 -0.32 0.79 16 4 C -0.62 -16.11 9.02 -34.44 -0.31 -16.42 16 5 H 0.06 1.69 7.96 -52.48 -0.42 1.27 16 6 C 0.04 1.11 5.33 -17.82 -0.09 1.01 16 7 N -0.90 -26.10 13.69 55.43 0.76 -25.34 16 8 Si 1.04 24.39 26.17 -169.99 -4.45 19.94 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.27 -5.92 5.53 56.52 0.31 -5.60 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.70 -13.13 5.07 -54.93 -0.28 -13.41 16 13 C 0.50 9.11 7.87 -10.99 -0.09 9.02 16 14 O -0.53 -11.99 16.16 -14.35 -0.23 -12.22 16 15 C 0.04 0.50 5.22 36.00 0.19 0.68 16 16 O -0.28 -4.01 9.67 -39.53 -0.38 -4.39 16 17 C 0.12 1.35 6.69 -39.22 -0.26 1.08 16 18 C -0.18 -1.63 9.03 -39.45 -0.36 -1.99 16 19 C -0.11 -0.82 9.92 -39.41 -0.39 -1.21 16 20 C 0.11 0.92 6.51 -83.66 -0.54 0.37 16 21 C -0.08 -0.67 5.66 -104.47 -0.59 -1.26 16 22 C -0.12 -1.12 9.63 -39.46 -0.38 -1.50 16 23 C -0.08 -0.45 5.99 -27.94 -0.17 -0.62 16 24 C -0.14 -0.85 6.07 -28.03 -0.17 -1.02 16 25 C 0.52 4.76 7.72 -11.18 -0.09 4.67 16 26 O -0.54 -6.81 17.91 5.55 0.10 -6.71 16 27 N -0.66 -5.16 5.37 -9.96 -0.05 -5.21 16 28 H 0.06 1.31 5.06 -51.93 -0.26 1.05 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.27 7.74 8.73 -40.82 -0.36 7.39 16 32 H 0.39 6.27 8.53 -40.82 -0.35 5.92 16 33 H 0.09 0.91 7.66 -51.93 -0.40 0.51 16 34 H 0.09 0.86 7.66 -51.93 -0.40 0.47 16 35 H 0.14 0.98 6.29 -52.49 -0.33 0.65 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.10 0.41 8.06 -51.93 -0.42 -0.01 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.41 2.61 8.83 -40.82 -0.36 2.25 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -34.54 351.13 -7.77 -42.32 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.46 Total: 4.48 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.07 Total: -4.75 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.43 Total: -43.96 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.51 Total: -23.33 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -4.45 Total: 19.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.54 -7.77 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.365 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds