Wall clock time and date at job start Tue Mar 31 2020 12:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 O 1.42893 * 109.47566 * 179.97438 * 15 13 12 17 17 C 1.35963 * 117.00340 * 180.02562 * 16 15 13 18 18 C 1.38750 * 119.98583 * 0.02562 * 17 16 15 19 19 C 1.38076 * 120.03100 * 180.02562 * 18 17 16 20 20 C 1.38849 * 119.97012 * 359.97438 * 19 18 17 21 21 C 1.38841 * 119.96206 * 0.02562 * 20 19 18 22 22 C 1.38082 * 120.01976 * 359.73992 * 21 20 19 23 23 C 1.50679 * 119.84513 * 179.97438 * 21 20 19 24 24 C 1.52903 * 109.53897 * 326.07503 * 23 21 20 25 25 C 1.50497 * 109.91205 * 48.63611 * 24 23 21 26 26 O 1.21290 * 119.62245 * 144.76711 * 25 24 23 27 27 N 1.34567 * 120.75687 * 324.74203 * 25 24 23 28 28 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 29 29 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 30 30 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 31 31 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 32 32 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 33 33 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 34 34 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 35 35 H 1.07991 * 119.98015 * 359.97438 * 18 17 16 36 36 H 1.07999 * 120.01295 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.00390 * 180.24983 * 22 21 20 38 38 H 1.08994 * 109.46701 * 206.04990 * 23 21 20 39 39 H 1.09003 * 109.44581 * 86.07905 * 23 21 20 40 40 H 1.09006 * 109.39747 * 288.50223 * 24 23 21 41 41 H 1.08995 * 109.40311 * 168.77517 * 24 23 21 42 42 H 0.96993 * 119.78353 * 180.82458 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 8 2.6976 0.1894 -4.6815 17 6 3.1321 -0.2949 -5.8753 18 6 3.5040 -1.6267 -5.9893 19 6 3.9459 -2.1195 -7.2011 20 6 4.0175 -1.2816 -8.3060 21 6 3.6451 0.0510 -8.1910 22 6 3.1988 0.5415 -6.9799 23 6 3.7244 0.9580 -9.3916 24 6 4.9124 0.5498 -10.2634 25 6 4.8899 -0.9367 -10.4971 26 8 5.2598 -1.3817 -11.5631 27 7 4.4645 -1.7780 -9.5368 28 1 -0.3633 0.4106 0.9420 29 1 -0.3632 0.6107 -0.8266 30 1 -0.3633 -1.0211 -0.1156 31 1 2.1697 -1.8615 3.4635 32 1 2.2490 -1.6319 -1.1526 33 1 3.6493 -1.1205 -3.3979 34 1 1.9778 -1.5508 -3.8325 35 1 3.4486 -2.2780 -5.1297 36 1 4.2358 -3.1561 -7.2895 37 1 2.9053 1.5771 -6.8918 38 1 3.8540 1.9883 -9.0606 39 1 2.8043 0.8754 -9.9702 40 1 5.8406 0.8233 -9.7615 41 1 4.8540 1.0677 -11.2207 42 1 4.4672 -2.7343 -9.6982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:16 Heat of formation + Delta-G solvation = -115.404927 kcal Electronic energy + Delta-G solvation = -25310.155496 eV Core-core repulsion = 21446.972438 eV Total energy + Delta-G solvation = -3863.183059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05600 -41.11353 -40.17972 -38.73893 -36.82681 -35.63943 -34.93610 -34.50416 -32.15572 -31.22846 -30.04920 -28.58381 -26.85244 -25.63466 -23.93493 -23.65717 -22.80784 -21.37086 -20.35665 -19.79608 -19.09954 -18.73897 -18.09548 -17.74998 -17.36442 -17.17263 -16.82580 -16.12358 -15.90993 -15.52312 -15.39868 -15.09986 -14.88920 -14.62742 -14.53771 -14.33365 -14.27462 -14.09379 -13.77531 -13.49694 -13.33937 -13.27613 -12.85374 -12.54077 -12.47059 -12.34010 -12.05718 -11.83761 -11.51819 -11.17811 -11.11205 -11.04593 -10.84041 -10.56295 -9.96775 -9.88134 -8.78763 -8.68241 -6.44689 0.16053 0.26619 1.46966 1.49873 1.50232 1.61818 1.66075 1.72192 2.05144 2.44042 2.70438 2.79820 3.01625 3.39487 3.63955 3.67710 3.78193 3.91103 4.02858 4.13960 4.16834 4.18173 4.31275 4.39537 4.50653 4.71039 4.77592 4.78490 4.86672 4.92020 4.92181 5.08443 5.08815 5.16827 5.31178 5.42668 5.54620 5.58618 5.63696 5.74562 6.01752 6.09630 6.36452 6.52503 6.76963 6.94891 7.26168 7.36847 8.60402 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038922 B = 0.002106 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.223372 B =13290.152647 C =13708.249817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.244 3.756 3 H 0.024 0.976 4 C -0.610 4.610 5 H 0.046 0.954 6 C -0.005 4.005 7 N -0.929 5.929 8 Si 1.070 2.930 9 H -0.278 1.278 10 H -0.249 1.249 11 H -0.280 1.280 12 N -0.696 5.696 13 C 0.501 3.499 14 O -0.582 6.582 15 C 0.050 3.950 16 O -0.316 6.316 17 C 0.097 3.903 18 C -0.182 4.182 19 C -0.102 4.102 20 C 0.106 3.894 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.075 4.075 24 C -0.134 4.134 25 C 0.517 3.483 26 O -0.577 6.577 27 N -0.654 5.654 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.260 0.740 32 H 0.409 0.591 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -1.781 -26.154 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.139 3.861 3 H 0.041 0.959 4 C -0.648 4.648 5 H 0.064 0.936 6 C -0.206 4.206 7 N -0.563 5.563 8 Si 0.893 3.107 9 H -0.204 1.204 10 H -0.173 1.173 11 H -0.206 1.206 12 N -0.347 5.347 13 C 0.287 3.713 14 O -0.462 6.462 15 C -0.028 4.028 16 O -0.229 6.229 17 C 0.051 3.949 18 C -0.201 4.201 19 C -0.122 4.122 20 C 0.011 3.989 21 C -0.085 4.085 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.173 4.173 25 C 0.307 3.693 26 O -0.457 6.457 27 N -0.298 5.298 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.245 0.755 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.328 0.361 -25.620 25.838 hybrid contribution 0.618 -2.626 -0.429 2.732 sum 3.946 -2.266 -26.049 26.443 Atomic orbital electron populations 1.22348 0.97527 1.00855 1.00133 1.18808 0.91503 0.93175 0.82567 0.95851 1.22237 1.40035 1.10395 0.92134 0.93620 1.26781 0.93893 1.08137 0.91786 1.70926 1.45741 1.08052 1.31628 0.83760 0.77862 0.71919 0.77189 1.20380 1.17308 1.20564 1.45955 1.65434 1.14488 1.08840 1.20781 0.78077 0.87221 0.85215 1.90677 1.51927 1.17970 1.85591 1.22561 1.04814 0.91949 0.83466 1.86142 1.81525 1.38523 1.16747 1.19254 0.96921 0.93421 0.85294 1.21351 1.04630 0.94159 0.99980 1.20818 1.00447 1.00815 0.90136 1.17651 1.01832 0.93535 0.85837 1.19467 1.00228 0.93155 0.95605 1.20239 1.03821 1.00750 0.89697 1.20521 0.98511 0.99918 0.92268 1.21739 1.01921 0.89439 1.04197 1.21299 0.74604 0.91202 0.82214 1.90764 1.48788 1.79791 1.26325 1.43519 1.62277 1.11090 1.12919 0.92880 0.94419 0.92512 0.93064 0.75519 0.86269 0.85845 0.82666 0.82553 0.84078 0.86767 0.88910 0.86607 0.85933 0.74611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.33 8.76 71.98 0.63 -5.70 16 2 C 0.24 11.09 2.11 44.25 0.09 11.18 16 3 H 0.02 1.18 6.21 -2.39 -0.01 1.16 16 4 C -0.61 -31.72 9.02 25.60 0.23 -31.49 16 5 H 0.05 2.48 7.96 -2.91 -0.02 2.46 16 6 C -0.01 -0.28 5.33 84.65 0.45 0.17 16 7 N -0.93 -54.67 13.69 21.44 0.29 -54.38 16 8 Si 1.07 49.02 26.17 68.60 1.80 50.81 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.25 -10.61 5.53 99.48 0.55 -10.06 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 N -0.70 -25.19 5.07 -446.10 -2.26 -27.45 16 13 C 0.50 17.40 7.87 87.66 0.69 18.09 16 14 O -0.58 -25.98 16.16 16.00 0.26 -25.72 16 15 C 0.05 1.13 5.22 71.23 0.37 1.50 16 16 O -0.32 -8.42 9.67 -74.10 -0.72 -9.13 16 17 C 0.10 1.97 6.69 22.51 0.15 2.12 16 18 C -0.18 -2.71 9.03 22.35 0.20 -2.51 16 19 C -0.10 -1.27 9.92 22.38 0.22 -1.05 16 20 C 0.11 1.50 6.51 38.12 0.25 1.75 16 21 C -0.08 -1.18 5.66 -19.76 -0.11 -1.30 16 22 C -0.13 -2.26 9.63 22.35 0.22 -2.04 16 23 C -0.08 -0.71 5.99 29.81 0.18 -0.53 16 24 C -0.13 -1.37 6.07 29.75 0.18 -1.18 16 25 C 0.52 8.71 7.72 87.63 0.68 9.39 16 26 O -0.58 -14.34 17.91 -3.06 -0.05 -14.39 16 27 N -0.65 -9.00 5.37 -303.93 -1.63 -10.64 16 28 H 0.05 2.27 5.06 -2.39 -0.01 2.26 16 29 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.26 15.26 8.73 -92.71 -0.81 14.45 16 32 H 0.41 12.22 8.53 -92.71 -0.79 11.43 16 33 H 0.12 1.99 7.66 -2.39 -0.02 1.97 16 34 H 0.12 1.93 7.66 -2.39 -0.02 1.91 16 35 H 0.16 1.61 6.29 -2.92 -0.02 1.59 16 36 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.11 0.69 8.06 -2.39 -0.02 0.67 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.42 4.58 8.83 -92.71 -0.82 3.76 16 Total: -1.00 -76.05 351.13 1.39 -74.66 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.72 Total: 17.81 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 4.43 Total: -1.58 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -3.60 Total: -92.46 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -0.51 Total: -49.24 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.80 Total: 50.81 kcal Total: -76.05 1.39 -74.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.741 kcal (2) G-P(sol) polarization free energy of solvation -76.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds