Wall clock time and date at job start Tue Mar 31 2020 12:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46786 * 2 1 4 4 C 1.50691 * 109.47304 * 120.00259 * 2 1 3 5 5 H 1.07999 * 119.99884 * 120.00014 * 4 2 1 6 6 C 1.37878 * 120.00042 * 299.99924 * 4 2 1 7 7 N 1.31512 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47280 * 90.00000 * 8 6 4 10 10 H 1.48500 * 109.47239 * 210.00439 * 8 6 4 11 11 H 1.48504 * 109.46844 * 330.00033 * 8 6 4 12 12 N 1.46500 * 109.47006 * 240.00391 * 2 1 3 13 13 C 1.34779 * 120.00169 * 84.99489 * 12 2 1 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.46866 * 180.02562 * 15 13 12 17 17 N 1.46500 * 109.46998 * 179.97438 * 16 15 13 18 18 C 1.35093 * 120.50779 * 269.72964 * 17 16 15 19 19 O 1.21296 * 120.13129 * 1.67609 * 18 17 16 20 20 C 1.50743 * 119.74638 * 181.44038 * 18 17 16 21 21 O 1.43006 * 109.73888 * 329.14621 * 20 18 17 22 22 C 1.35978 * 116.71174 * 46.19739 * 21 20 18 23 23 C 1.38394 * 120.66478 * 147.14246 * 22 21 20 24 24 C 1.38312 * 119.87602 * 180.02562 * 23 22 21 25 25 C 1.38285 * 120.25765 * 359.96838 * 24 23 22 26 26 C 1.38285 * 120.19979 * 0.02562 * 25 24 23 27 27 C 1.38506 * 119.81262 * 0.02599 * 26 25 24 28 28 H 1.09005 * 109.46786 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47204 * 299.99587 * 1 2 3 30 30 H 1.09002 * 109.47355 * 59.99796 * 1 2 3 31 31 H 0.97001 * 120.00093 * 179.97438 * 7 6 4 32 32 H 0.96996 * 119.99986 * 265.00087 * 12 2 1 33 33 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 34 34 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 35 35 H 1.08993 * 109.46955 * 300.00219 * 16 15 13 36 36 H 1.09000 * 109.47050 * 60.00048 * 16 15 13 37 37 H 1.08997 * 109.54694 * 208.96433 * 20 18 17 38 38 H 1.09000 * 109.19994 * 89.11011 * 20 18 17 39 39 H 1.08001 * 120.06474 * 0.09301 * 23 22 21 40 40 H 1.07997 * 119.87349 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.89913 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.09662 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1196 4.0078 9 1 3.6306 -0.5441 4.4118 10 1 1.3446 -0.9492 5.1122 11 1 2.4882 -2.5655 3.7120 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6487 -0.7286 -3.5878 16 6 2.7008 0.2548 -4.7589 17 7 3.1891 -0.4357 -5.9551 18 6 4.5105 -0.4737 -6.2336 19 8 5.3073 0.0395 -5.4767 20 6 4.9914 -1.1610 -7.4861 21 8 4.1105 -2.2387 -7.8142 22 6 2.7775 -1.9746 -7.7670 23 6 1.9026 -2.6008 -8.6374 24 6 0.5498 -2.3196 -8.5754 25 6 0.0678 -1.4156 -7.6465 26 6 0.9359 -0.7861 -6.7733 27 6 2.2918 -1.0627 -6.8313 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.7082 1.1607 3.4844 32 1 2.2490 -1.6317 -1.1527 33 1 1.9758 -1.5504 -3.8327 34 1 3.6479 -1.1211 -3.3988 35 1 1.7019 0.6477 -4.9480 36 1 3.3739 1.0763 -4.5137 37 1 5.9968 -1.5501 -7.3255 38 1 5.0068 -0.4426 -8.3058 39 1 2.2753 -3.3086 -9.3631 40 1 -0.1329 -2.8080 -9.2550 41 1 -0.9896 -1.2007 -7.6029 42 1 0.5577 -0.0801 -6.0489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:29 Heat of formation + Delta-G solvation = -75.595146 kcal Electronic energy + Delta-G solvation = -26243.269451 eV Core-core repulsion = 22381.812674 eV Total energy + Delta-G solvation = -3861.456777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81919 -39.25684 -38.88625 -37.88296 -36.08437 -34.82352 -32.45333 -31.79306 -30.96292 -30.08263 -29.05456 -27.69987 -25.28659 -24.75917 -23.62758 -22.33746 -20.90405 -19.72128 -19.42845 -19.39748 -17.68822 -17.23023 -17.07325 -16.15041 -15.68251 -15.53778 -15.37200 -15.14695 -14.99922 -14.72427 -14.44757 -14.31032 -14.07909 -13.56890 -13.26541 -12.95117 -12.73656 -12.46172 -12.39418 -12.17815 -11.73057 -11.61218 -11.49645 -11.12833 -11.06548 -10.95843 -10.76721 -10.65009 -10.32075 -10.24705 -10.17786 -9.12959 -9.06485 -8.97843 -8.56073 -8.12882 -7.94324 -6.13277 -4.22564 0.76653 0.94136 2.05093 2.23625 2.95210 3.24487 3.30787 3.32109 3.34470 3.38500 3.67148 4.09335 4.32957 4.38171 4.56246 4.63345 4.75431 4.86507 4.93570 4.96251 5.01617 5.16493 5.19066 5.29798 5.43781 5.59660 5.68271 5.76456 5.88061 5.94180 6.13439 6.16270 6.30604 6.62796 6.80247 6.93680 7.04380 7.12956 7.43021 7.49082 7.53432 7.67897 7.89724 8.13512 8.63144 8.75927 9.07988 9.44949 10.92752 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.002782 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.553664 B =10061.477242 C =10670.400971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.707 5.707 13 C 0.507 3.493 14 O -0.558 6.558 15 C -0.157 4.157 16 C 0.125 3.875 17 N -0.550 5.550 18 C 0.483 3.517 19 O -0.501 6.501 20 C 0.053 3.947 21 O -0.303 6.303 22 C 0.073 3.927 23 C -0.109 4.109 24 C -0.115 4.115 25 C -0.108 4.108 26 C -0.124 4.124 27 C 0.101 3.899 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -7.277 -24.687 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.354 5.354 13 C 0.291 3.709 14 O -0.437 6.437 15 C -0.198 4.198 16 C 0.004 3.996 17 N -0.275 5.275 18 C 0.271 3.729 19 O -0.375 6.375 20 C -0.025 4.025 21 O -0.218 6.218 22 C 0.027 3.973 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.126 4.126 26 C -0.144 4.144 27 C 0.006 3.994 28 H 0.045 0.955 29 H 0.109 0.891 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.163 0.837 38 H 0.115 0.885 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.283 -6.149 -24.103 24.908 hybrid contribution 0.381 -0.760 1.086 1.379 sum 1.664 -6.909 -23.018 24.090 Atomic orbital electron populations 1.22074 0.98413 0.99090 1.00905 1.18760 0.91049 0.94018 0.79989 0.93329 1.21224 1.32464 1.13267 0.90357 0.92079 1.24890 0.94774 0.94966 0.99075 1.69899 1.35816 1.22495 1.23901 0.86439 0.78629 0.79848 0.82134 1.20531 1.21040 1.19834 1.46531 1.64746 1.13603 1.10521 1.20122 0.78687 0.87412 0.84638 1.90662 1.51777 1.15976 1.85326 1.21972 1.03716 0.99877 0.94285 1.21465 1.02193 0.94689 0.81218 1.45857 1.05760 1.52308 1.23552 1.21568 0.82016 0.80502 0.88778 1.90820 1.53075 1.44621 1.48937 1.23202 0.95031 0.90011 0.94295 1.86226 1.13281 1.35856 1.86410 1.18627 0.83653 0.98337 0.96729 1.20518 0.92497 1.01768 0.97995 1.21002 0.94383 0.98655 0.99335 1.21043 0.99939 0.96579 0.95067 1.20855 0.90553 1.01685 1.01334 1.18170 0.91142 0.97009 0.93032 0.95483 0.89106 0.96678 0.92557 0.77853 0.89148 0.88935 0.88564 0.87933 0.83715 0.88472 0.84483 0.84951 0.84973 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.77 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.88 5.07 -54.93 -0.28 -15.16 16 13 C 0.51 10.06 7.79 -10.99 -0.09 9.97 16 14 O -0.56 -13.04 15.64 5.56 0.09 -12.96 16 15 C -0.16 -2.34 6.02 -27.88 -0.17 -2.51 16 16 C 0.13 1.76 4.49 -4.04 -0.02 1.75 16 17 N -0.55 -6.86 2.72 -113.21 -0.31 -7.17 16 18 C 0.48 6.11 7.67 -10.82 -0.08 6.03 16 19 O -0.50 -8.02 16.76 5.54 0.09 -7.93 16 20 C 0.05 0.46 7.16 36.03 0.26 0.71 16 21 O -0.30 -3.01 10.45 -19.67 -0.21 -3.22 16 22 C 0.07 0.73 6.44 -39.09 -0.25 0.48 16 23 C -0.11 -0.86 10.00 -39.50 -0.39 -1.25 16 24 C -0.11 -0.79 10.04 -39.54 -0.40 -1.19 16 25 C -0.11 -0.83 10.04 -39.55 -0.40 -1.22 16 26 C -0.12 -1.20 9.36 -39.47 -0.37 -1.57 16 27 C 0.10 1.11 6.39 -83.49 -0.53 0.57 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.39 7.15 8.54 -40.82 -0.35 6.80 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.10 1.27 5.92 -51.93 -0.31 0.96 16 36 H 0.10 1.65 7.44 -51.93 -0.39 1.27 16 37 H 0.15 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 1.31 6.12 -52.49 -0.32 0.99 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -33.21 354.83 -7.74 -40.96 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.42 Total: 6.62 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.67 Total: 2.12 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.04 Total: -46.76 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.03 Total: -24.10 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.21 -7.74 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.639 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds